mRNA_Ecto-sp13_S_contig597.16543.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig597.16543.1
Unique NamemRNA_Ecto-sp13_S_contig597.16543.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig597.16543.1 vs. uniprot
Match: D7FLC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC8_ECTSI)

HSP 1 Score: 374 bits (960), Expect = 2.520e-129
Identity = 201/232 (86.64%), Postives = 210/232 (90.52%), Query Frame = 1 
Query:    1 MDVAAKAKKSQALIDSIEELIALEADVSLATECCQQQREPEVMVPLTEVAFMHGTVAGESVMMGLGQDYFVERSPEQARAVLRRRMADLSEQARVLREGTLLAPEEPAKSVQGQMRRKKGDSDTKKTWAKGFLSSKGSGGPAKGRLPPKRQTVPPKEPKEATDGGSRRTPTEIKFDDSEGQEVMCEVPPEQICSPPQGPT--RLYSYCLSSPGSVTCREPAENIYPPFGSNR 690
            MDVAAKAKKSQALIDSIEELIALEADVSLAT+CCQQQREPEVMVPLT+VAFMHG+VAGES+MMGLGQDYFVER+PEQAR VL+RRMADLSEQARVLREGTLLAP+EPAKSVQGQ RRKKGDSDTKKTWAKGFLSSKGSGGP KG LPPKRQTVPP+EPKEA DGGS RTPTEIKFDDSEGQEV    P E   S   GPT  RL SYCLSSPGSVTCREPA N +PPFGSNR
Sbjct:    1 MDVAAKAKKSQALIDSIEELIALEADVSLATQCCQQQREPEVMVPLTDVAFMHGSVAGESIMMGLGQDYFVERTPEQAREVLQRRMADLSEQARVLREGTLLAPKEPAKSVQGQRRRKKGDSDTKKTWAKGFLSSKGSGGPTKGHLPPKRQTVPPEEPKEAADGGSLRTPTEIKFDDSEGQEVRISSPSEDFQST-TGPTINRLCSYCLSSPGSVTCREPAGNAFPPFGSNR 231
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig597.16543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLC8_ECTSI2.520e-12986.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig597contigEcto-sp13_S_contig597:20459..23017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size693
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionPrefoldin alpha-like
Ec32 orthologEc-12_007680.1
Cds size693
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463829.9078686-CDS-Ecto-sp13_S_contig597:20458..205811681463829.9078686-CDS-Ecto-sp13_S_contig597:20458..20581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig597 20459..20581 +
1681463829.917673-CDS-Ecto-sp13_S_contig597:21339..214781681463829.917673-CDS-Ecto-sp13_S_contig597:21339..21478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig597 21340..21478 +
1681463829.9266663-CDS-Ecto-sp13_S_contig597:21993..221781681463829.9266663-CDS-Ecto-sp13_S_contig597:21993..22178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig597 21994..22178 +
1681463829.9355683-CDS-Ecto-sp13_S_contig597:22510..226221681463829.9355683-CDS-Ecto-sp13_S_contig597:22510..22622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig597 22511..22622 +
1681463829.9518635-CDS-Ecto-sp13_S_contig597:22883..230171681463829.9518635-CDS-Ecto-sp13_S_contig597:22883..23017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig597 22884..23017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig597.16543.1prot_Ecto-sp13_S_contig597.16543.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig597 20459..23017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig597.16543.1

>prot_Ecto-sp13_S_contig597.16543.1 ID=prot_Ecto-sp13_S_contig597.16543.1|Name=mRNA_Ecto-sp13_S_contig597.16543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
MDVAAKAKKSQALIDSIEELIALEADVSLATECCQQQREPEVMVPLTEVA
FMHGTVAGESVMMGLGQDYFVERSPEQARAVLRRRMADLSEQARVLREGT
LLAPEEPAKSVQGQMRRKKGDSDTKKTWAKGFLSSKGSGGPAKGRLPPKR
QTVPPKEPKEATDGGSRRTPTEIKFDDSEGQEVMCEVPPEQICSPPQGPT
RLYSYCLSSPGSVTCREPAENIYPPFGSNR*
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mRNA from alignment at Ecto-sp13_S_contig597:20459..23017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig597.16543.1 ID=mRNA_Ecto-sp13_S_contig597.16543.1|Name=mRNA_Ecto-sp13_S_contig597.16543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2559bp|location=Sequence derived from alignment at Ecto-sp13_S_contig597:20459..23017+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTTGCGGCAAAAGCGAAGAAATCACAAGCCTTGATCGATTCGAT
CGAAGAGCTGATTGCGCTCGAGGCGGATGTTTCACTGGCGACGGAGTGCT
GCCAACAGCAGAGAGAACCTGAGGTGATTTGACTGCCCCCCACAAGATCA
ACTCTCGATGGGTGTGTGTCCGTGTGTGTAGGCCTCCTTCACTGGAAAGG
TTTATCGAAGGGTCTGCCGTTTTTCCAACTCGTGGAGCTTGCTTTGTTGG
GCTGTCGTCGTACATGACTCGTACATGACTCGTGAGACATCCTGTTCAAA
CCCAAAACTACTGCCTCCAACCACTGTGTCGGTAAACACGGCACACACTG
CTCCGTATCTTACGACACTTCCCTTCTCCCCGACGAAATGGCGAAGGTGT
ATCATTCCGACACCTATGCATAGTGTTGGGGAAGGCTTTGACAGCCGATG
CACGTGTCGTTGAATACATGTACGTAACTCGAAACCCTGCCCAAAATAAT
CCCTTTGTGTTTATTCAATGTTGAAAATGCGGTAACGTTTTGTCTCCGAG
AGCTGTTCAAAGATCTCGGCGACGCAAGGGTGAAATGTGAACGATTGCTG
TAGGGCGGGCGACCAGTCTCTGTCTGTCTGTCTGTCTGTCTGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCATTTCGTGGTTATTCCAGGGCGCCGACGGAGTGCGGGAACCG
CAACAGAAGTGGCCCCGCAGTCGGATAATCACACGGCTACCTCTGATTTC
AACAGCAGTCGATCTCTCCGAAAAACTCACGTCTTGCTGTTGCTCTTTCA
ATCTTGCTCCGTCCATCTTGCCAACCGAAAGGTCATGGTGCCTTTAACCG
AGGTGGCTTTCATGCACGGGACTGTTGCTGGCGAGAGCGTCATGATGGGT
TTGGGACAAGACTATTTCGTCGAGAGGTCTCCTGAACAAGCACGGGCAGT
TCTGCGCAGAAGAATGGCAGGTGTGCAGCAGAAATACGATGTTATCTGAG
CGTGTAGCTCGACTCGAGTGGTCAGCGTGGGTACCGTCGCACAGGTAAGG
ATGTTTGCATCCATCCTTCCCTGACAGAGCGCCCTGCTGCCATTCATGTT
GAATCCTCCTAAATGATGATGGGGAGGTGTGGTTTACACAGCCAATGAAC
ACACGGGCGACGCTATTCCGAACCGTACTTTCATTTTCGAGGTCTACACA
TCCAGCGGATTGAAGCCCATTGCCATCTTCTCGGTTGCGGTCATGCTTAC
GAATCGCAGAAACGCGGGCACCGTGTGTACAGGTCAAGCGGAATAGATCG
CTCCATCCATGCAGGACATGATTCCATCCGGGCTTGGTCAAGGTCTCCCC
GACCGGCCCCATTCGTAGTATCTCTGGTAGAGGCAGTATTTTACACCCAA
GACCACGATCGCAGCGCTGTCGTTCGCCAGATGGTGAGCGTGATGGGTTG
TTAAGGTTTCTTGCTGCTGCTGTGTTGTTGTTCAGATCTTTCGGAGCAGG
CGCGAGTTCTACGGGAGGGCACGCTTCTTGCACCCGAAGAACCAGCGAAA
TCGGTACAGGGACAAATGCGCCGAAAGAAGGGCGATTCCGACACCAAAAA
GACCTGGGCCAAGGGCTTCTTGTCGTCCAAAGGAAGTGGCGGACCCGCGA
AGGGCCGTCTACCTCCAAAGGTACGTGCTGGAACACCGTGCGTGCTGAGG
CAATGTGTGCGCTCACGTCTAGCCCAGCCAATGCATCGTGCAACTTCAGC
TTCGAATAGGCCGCACTGCGCCGCTGCAGACAGAACGTGTCGATTTGGAG
ACAGGAGGTCGGGAACCAGCGTGTTCTCGACGAAGGCGCGGAGCCAATTG
AGTAATCGCGCACGAGGTGATGGCGAGAACATGGCGTTGGAAGGTGTTGA
GTGTGGGTTGCTTTTCTGAGCGGTGGTACAATGTGCCCCTCGGGCACGTT
GCTTACTTCTCTCCCCAAAGCGCCATTTGCTTTTGTGCCGCTCGTGTGAC
AGCGTCAGACGGTTCCCCCTAAAGAACCCAAGGAGGCTACTGACGGGGGC
TCTCGGCGCACCCCAACCGAGATTAAGTTCGACGACTCGGAAGGCCAAGA
GGTGATGTGCGAAGGTAGATGGATCGACGAAGTATGCGGCGTATCGATCA
GCGCTCCAAAAGTGTACGGCCACGCGTGCCCGAACTAAGATATAAGTAGT
CGTCCTGAGCCGAAAGCCCTCCTGTCTACTTTCAGCAAGGGTTTGTGTGT
TGGTCGAGCCCCATTAAATGCTTTCGGTGTTGCTGCCCGTCTTGGCTGTA
TCGGCCCTGCTTTTGTCCGTTCATAATTGTTCTGGTCCATTTGAATGCCT
TCCTCAGCACACAGGTTAGGATCAGTACCCCCAGAGCAAATTTGCAGCCC
ACCACAGGGGCCGACTAGGTTGTACAGCTATTGTTTGTCGTCTCCAGGTA
GCGTTACATGTAGAGAGCCGGCAGAGAATATCTACCCGCCCTTTGGCTCG
AACCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig597:20459..23017+

>mRNA_Ecto-sp13_S_contig597.16543.1 ID=mRNA_Ecto-sp13_S_contig597.16543.1|Name=mRNA_Ecto-sp13_S_contig597.16543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig597:20459..23017+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTTGCGGCAAAAGCGAAGAAATCACAAGCCTTGATCGATTCGAT
CGAAGAGCTGATTGCGCTCGAGGCGGATGTTTCACTGGCGACGGAGTGCT
GCCAACAGCAGAGAGAACCTGAGGTCATGGTGCCTTTAACCGAGGTGGCT
TTCATGCACGGGACTGTTGCTGGCGAGAGCGTCATGATGGGTTTGGGACA
AGACTATTTCGTCGAGAGGTCTCCTGAACAAGCACGGGCAGTTCTGCGCA
GAAGAATGGCAGATCTTTCGGAGCAGGCGCGAGTTCTACGGGAGGGCACG
CTTCTTGCACCCGAAGAACCAGCGAAATCGGTACAGGGACAAATGCGCCG
AAAGAAGGGCGATTCCGACACCAAAAAGACCTGGGCCAAGGGCTTCTTGT
CGTCCAAAGGAAGTGGCGGACCCGCGAAGGGCCGTCTACCTCCAAAGCGT
CAGACGGTTCCCCCTAAAGAACCCAAGGAGGCTACTGACGGGGGCTCTCG
GCGCACCCCAACCGAGATTAAGTTCGACGACTCGGAAGGCCAAGAGGTGA
TGTGCGAAGTACCCCCAGAGCAAATTTGCAGCCCACCACAGGGGCCGACT
AGGTTGTACAGCTATTGTTTGTCGTCTCCAGGTAGCGTTACATGTAGAGA
GCCGGCAGAGAATATCTACCCGCCCTTTGGCTCGAACCGCTGA
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