mRNA_Ecto-sp13_S_contig597.16540.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig597.16540.1
Unique NamemRNA_Ecto-sp13_S_contig597.16540.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig597.16540.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE)

HSP 1 Score: 352 bits (903), Expect = 9.310e-110
Identity = 198/229 (86.46%), Postives = 202/229 (88.21%), Query Frame = 1 
Query:    1 AAAFAEVKVGVESPTGRAVRALAAGGGGGSDKSVDAVKSGDSVVSDEGPPGVPSLPVANHGETSGKPYDVSRTAAAAAVAAGAVAATKECGSRVKLDEEEDTGGRADPALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGGVRLSPRAGSRLPEIDDDXXXXAXXEEMEENGEVAGRRAPGSCSPFSRPPLNSGTDDGRSERAGQGEGSASAVSLEKALAISRSRMMTP 687
            AAAFAEVKVGVESPTGRAVRALAA GGG SDKSV A +SGDSVVSD  PPG+PSLP ANHGETSGKPY VSRTAAAAAVAAGAVAATK  G R K DEEEDTGG ADPALSPRGAPP APFGGMLSGFGCMAPQLSPGKGG RLSPRAGSRLPEIDDD    A  EEMEENGEVAG+RAPGSCSPFSRPPLNSGT DGRSER GQG GSASAVSLEKALA+SRS  MTP
Sbjct:  531 AAAFAEVKVGVESPTGRAVRALAAAGGGSSDKSVVADRSGDSVVSDGRPPGMPSLPAANHGETSGKPYGVSRTAAAAAVAAGAVAATKAYGIREKFDEEEDTGGGADPALSPRGAPPSAPFGGMLSGFGCMAPQLSPGKGGARLSPRAGSRLPEIDDDDSSLAEEEEMEENGEVAGKRAPGSCSPFSRPPLNSGTGDGRSERVGQGGGSASAVSLEKALALSRSCTMTP 759
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BLAST of mRNA_Ecto-sp13_S_contig597.16540.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 3.020e-96
Identity = 192/230 (83.48%), Postives = 195/230 (84.78%), Query Frame = 1 
Query:    1 AAAFAEVKVGVESPTGRAVRALAAGGGGGSDKSVDAVKSGDSVVSDEGPPGVPSLPVANHGETSGKPYDVSRTAAAAAVAAGAVAATKECGSRVKLDEEEDTGGRADPALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGGVRLSPRAGSRLPEIDDDXXXXAXXEEMEENGE-VAGRRAPGSCSPFSRPPLNSGTDDGRSERAGQGEGSASAVSLEKALAISRSRMMTP 687
            AAAFAEV+VGVESPTGRAVRALAAGGGG SDKSV A KSGDSVVSDEGPPG+PSLP ANHGETSGKPYDVSRTAAAAAVAAGAVAA K    R K D EEDTG  AD ALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKG  RLSPRAGSRLPEIDD XXXX XX       E VAGRRAPGSCSP SRP LNSG DDGR ER GQGE SASAVSLEKAL +SRSR MTP
Sbjct: 1301 AAAFAEVRVGVESPTGRAVRALAAGGGGDSDKSVVADKSGDSVVSDEGPPGMPSLPAANHGETSGKPYDVSRTAAAAAVAAGAVAAAKAYDIREKPDGEEDTGEGADLALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGAARLSPRAGSRLPEIDDXXXXXXXXXXXXXXXEEVAGRRAPGSCSPLSRPQLNSGPDDGRGERVGQGEASASAVSLEKALDLSRSRTMTP 1530
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig597.16540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEE7_9PHAE9.310e-11086.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLC6_ECTSI3.020e-9683.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig597contigEcto-sp13_S_contig597:9077..9767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size693
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007660.1
Cds size690
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463829.7892225-CDS-Ecto-sp13_S_contig597:9076..97661681463829.7892225-CDS-Ecto-sp13_S_contig597:9076..9766Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig597 9077..9766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig597.16540.1prot_Ecto-sp13_S_contig597.16540.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig597 9077..9766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig597.16540.1

>prot_Ecto-sp13_S_contig597.16540.1 ID=prot_Ecto-sp13_S_contig597.16540.1|Name=mRNA_Ecto-sp13_S_contig597.16540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
AAAFAEVKVGVESPTGRAVRALAAGGGGGSDKSVDAVKSGDSVVSDEGPP
GVPSLPVANHGETSGKPYDVSRTAAAAAVAAGAVAATKECGSRVKLDEEE
DTGGRADPALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGGVRLSPRAGS
RLPEIDDDDSSLAEEEEMEENGEVAGRRAPGSCSPFSRPPLNSGTDDGRS
ERAGQGEGSASAVSLEKALAISRSRMMTPG
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mRNA from alignment at Ecto-sp13_S_contig597:9077..9767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig597.16540.1 ID=mRNA_Ecto-sp13_S_contig597.16540.1|Name=mRNA_Ecto-sp13_S_contig597.16540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=691bp|location=Sequence derived from alignment at Ecto-sp13_S_contig597:9077..9767+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGCGTTTGCTGAGGTGAAGGTGGGGGTGGAGTCGCCGACTGGTCG
CGCCGTGCGTGCGCTTGCCGCCGGCGGCGGCGGCGGCTCTGACAAGAGCG
TTGACGCTGTCAAGAGCGGCGACAGCGTCGTGTCCGACGAAGGGCCTCCG
GGGGTGCCGTCCCTACCTGTCGCTAATCACGGCGAAACCTCTGGGAAACC
CTATGATGTCTCGAGAACGGCCGCGGCCGCTGCAGTCGCCGCCGGGGCCG
TTGCCGCTACGAAGGAGTGCGGCAGTCGCGTGAAGCTCGACGAAGAAGAA
GACACTGGTGGGCGTGCTGACCCCGCCCTTTCCCCTCGCGGTGCCCCTCC
TCCTGCACCTTTTGGGGGCATGCTCTCTGGCTTCGGGTGCATGGCGCCCC
AGCTTTCTCCGGGGAAGGGGGGCGTGCGTCTGTCGCCAAGGGCAGGCAGC
CGTCTGCCGGAGATCGACGACGATGACAGCAGCTTGGCCGAGGAGGAGGA
GATGGAAGAGAACGGGGAAGTCGCCGGGAGACGTGCGCCTGGGAGTTGCT
CGCCCTTTTCGCGGCCGCCGCTCAACTCCGGGACTGACGACGGCCGCAGC
GAGCGTGCCGGGCAGGGGGAAGGATCAGCGTCTGCGGTGTCCCTCGAGAA
GGCGCTCGCTATATCTCGCTCGCGCATGATGACCCCCGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig597:9077..9767+

>mRNA_Ecto-sp13_S_contig597.16540.1 ID=mRNA_Ecto-sp13_S_contig597.16540.1|Name=mRNA_Ecto-sp13_S_contig597.16540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig597:9077..9767+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGCGTTTGCTGAGGTGAAGGTGGGGGTGGAGTCGCCGACTGGTCG
CGCCGTGCGTGCGCTTGCCGCCGGCGGCGGCGGCGGCTCTGACAAGAGCG
TTGACGCTGTCAAGAGCGGCGACAGCGTCGTGTCCGACGAAGGGCCTCCG
GGGGTGCCGTCCCTACCTGTCGCTAATCACGGCGAAACCTCTGGGAAACC
CTATGATGTCTCGAGAACGGCCGCGGCCGCTGCAGTCGCCGCCGGGGCCG
TTGCCGCTACGAAGGAGTGCGGCAGTCGCGTGAAGCTCGACGAAGAAGAA
GACACTGGTGGGCGTGCTGACCCCGCCCTTTCCCCTCGCGGTGCCCCTCC
TCCTGCACCTTTTGGGGGCATGCTCTCTGGCTTCGGGTGCATGGCGCCCC
AGCTTTCTCCGGGGAAGGGGGGCGTGCGTCTGTCGCCAAGGGCAGGCAGC
CGTCTGCCGGAGATCGACGACGATGACAGCAGCTTGGCCGAGGAGGAGGA
GATGGAAGAGAACGGGGAAGTCGCCGGGAGACGTGCGCCTGGGAGTTGCT
CGCCCTTTTCGCGGCCGCCGCTCAACTCCGGGACTGACGACGGCCGCAGC
GAGCGTGCCGGGCAGGGGGAAGGATCAGCGTCTGCGGTGTCCCTCGAGAA
GGCGCTCGCTATATCTCGCTCGCGCATGATGACCCCCGGC
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