mRNA_Ecto-sp13_S_contig5969.16538.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Match: D8LBE9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE9_ECTSI) HSP 1 Score: 268 bits (686), Expect = 2.770e-90 Identity = 149/159 (93.71%), Postives = 153/159 (96.23%), Query Frame = 1
Query: 1 MKSFLFMAIILLAAVLQTSNGFVVAPSSSLNVRRQSHSGMQMLXXXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKKKSPDSYRLSCCTMVSGPVTVQTKP 477
MKSFLF+A+I+LAAVLQ SNGFVVAPSSSLNVRRQSHSGMQML XXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLL+K K P SYRLSCCTMVSGPVTVQTKP
Sbjct: 1 MKSFLFVALIVLAAVLQISNGFVVAPSSSLNVRRQSHSGMQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLDKNKRPASYRLSCCTMVSGPVTVQTKP 159
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Match: A0A836CNT2_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT2_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.250e-38 Identity = 77/146 (52.74%), Postives = 94/146 (64.38%), Query Frame = 1
Query: 40 AVLQTSNGFVVAPSSSLNVRRQSHSGMQMLXXXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKKKSPDSYRLSCCTMVSGPVTVQTKP 477
+V+ + F+VAP+ V+R + + + I V VQQK FK+T + + NLRKALM I+IYPLQGKIYNCGGGGSCGTC VNV AG NCSPKGP EKKLL K P++YRLSCCT V+G +TV TKP
Sbjct: 15 SVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKSKG--IEVTVQQKY-FKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNK--PETYRLSCCTKVNGNITVATKP 155
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Match: A0A7S2UXM9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXM9_9STRA) HSP 1 Score: 132 bits (331), Expect = 2.210e-36 Identity = 73/154 (47.40%), Postives = 92/154 (59.74%), Query Frame = 1
Query: 16 FMAIILLAAVLQTSNGFVVAPSSSLNVRRQSHSGMQMLXXXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKKKSPDSYRLSCCTMVSGPVTVQTKP 477
F +I L + ++ F+ + V+ S + +QML + V+Q+ GF + +L G NLRK LM KIDIYPLQGK+ NCGGGG CGTCAV V GA N SPK P EKK+L KK P++YRLSCCT VSG TV+TKP
Sbjct: 3 FTVVIFLVCAISGASAFLGQSLALNRVQASSSTSLQMLFGSKKKAAPVKGKYSITVKQR-GFTDFDLETEGTANLRKTLMAQKIDIYPLQGKLTNCGGGGVCGTCAVEVMDGANNLSPKAPNEKKVLSKK--PENYRLSCCTRVSGACTVRTKP 153
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Match: W7TM71_9STRA (Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM71_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.820e-30 Identity = 63/103 (61.17%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 175 VKVQQKTGFKETELTL--AGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKKKSPDSYRLSCCTMVSGPVTVQTKP 477
V VQQK +K EL + NLRK LM NKIDIYPLQGKIYNCGGGG CGTCA+ + GA+N +PK P E K L KK D RL+CCT SG VTV+TKP
Sbjct: 58 VTVQQKF-YKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKG-DDIRLACCTRASGDVTVKTKP 158
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Match: M1VFK1_CYAM1 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VFK1_CYAM1) HSP 1 Score: 113 bits (282), Expect = 1.570e-28 Identity = 47/82 (57.32%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 232 TNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKKKSPDSYRLSCCTMVSGPVTVQTKP 477
+NLRK L++NKID+Y L+GK+ NCGGGG CGTC V++ G N +P+G E ++ E K++PDS+RLSCCT + GP+TV+TKP
Sbjct: 109 SNLRKVLLENKIDVYTLRGKLTNCGGGGQCGTCIVDITEGQYNTNPRGWREARIFENKQAPDSWRLSCCTKIEGPITVRTKP 190
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Match: UPI00055BF685 ((2Fe-2S)-binding protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00055BF685) HSP 1 Score: 99.0 bits (245), Expect = 5.350e-24 Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 1
Query: 208 TELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKKKSPDSYRLSCCTMVSGPVTVQTKP 477
TE+ A +NLR+ + N +DIY L+GK+ NCGG G C TC V++ G +N SP+ E+K L KK PDSYRLSC T+V GP+TV+TKP
Sbjct: 17 TEVVAANGSNLREKALQNNVDIYKLKGKLTNCGGVGQCSTCIVDIVEGMENLSPRTDFEQKRLGKK--PDSYRLSCQTVVKGPITVRTKP 104
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Match: A0A835YVE2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVE2_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 7.210e-22 Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 235 NLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKKKSPDSYRLSCCTMVSGPVTVQTKP 477
NLRK L+DNK+D+Y K+ CGGGG+CGTC V V G +NCS KG GE+K+L K RL+CCT V+GPV+V KP
Sbjct: 40 NLRKLLLDNKVDLYKPLDKLKQCGGGGTCGTCRVRVTEGMENCSKKGLGEEKML--KAVGADIRLACCTRVTGPVSVTVKP 118
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Match: A0A2T2RV34_9CYAN (Iron ABC transporter substrate-binding protein n=1 Tax=Cyanobacteria bacterium QH_9_48_43 TaxID=1919126 RepID=A0A2T2RV34_9CYAN) HSP 1 Score: 93.2 bits (230), Expect = 9.260e-22 Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 205 ETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKKKSPDSYRLSCCTMVSGPVTVQTKP 477
+ E+ A TNLR+ ++N ID+Y L+GK+ NCGG G CGTC V V G +N S + EK+ +KK PDSYRLSC T+V+G V+V TKP
Sbjct: 10 DKEVVAAEGTNLREKALENGIDVYTLKGKLTNCGGDGQCGTCIVEVVEGMENLSERTEPEKQKFKKK--PDSYRLSCQTLVNGSVSVITKP 98
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Match: A0A218QTJ0_9CYAN (Ferredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A218QTJ0_9CYAN) HSP 1 Score: 92.4 bits (228), Expect = 1.660e-21 Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 211 ELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKKKSPDSYRLSCCTMVSGPVTVQTKP 477
E+ A NLR M N IDIY GK+ NCGGGG+CGTC V + G +N SP+ E ++L+KK P++YRL+C T+V+G V+V TKP
Sbjct: 12 EVIAANGANLRLKAMQNNIDIYKFIGKMTNCGGGGNCGTCIVEIVEGIENLSPRTDAENRILKKK--PENYRLACQTVVNGAVSVVTKP 98
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Match: K9YSI2_DACSA (Ferredoxin n=2 Tax=Cyanobacteria TaxID=1117 RepID=K9YSI2_DACSA) HSP 1 Score: 91.3 bits (225), Expect = 5.250e-21 Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 205 ETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKKKSPDSYRLSCCTMVS-GPVTVQTKP 477
+ E+ A NLR+ ++N++DIY +GK+ NCGG G CGTC V V G +N S + P E+K L+KK PDSYRLSC T+V+ G V++ TKP
Sbjct: 10 DKEVIAADGANLREKALENRVDIYTFRGKMLNCGGYGQCGTCVVEVVEGMENLSERTPAEQKKLKKK--PDSYRLSCQTIVNHGDVSIVTKP 99 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5969.16538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5969.16538.1 >prot_Ecto-sp13_S_contig5969.16538.1 ID=prot_Ecto-sp13_S_contig5969.16538.1|Name=mRNA_Ecto-sp13_S_contig5969.16538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp MKSFLFMAIILLAAVLQTSNGFVVAPSSSLNVRRQSHSGMQMLFGGGGAKback to top mRNA from alignment at Ecto-sp13_S_contig5969:4159..7765- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5969.16538.1 ID=mRNA_Ecto-sp13_S_contig5969.16538.1|Name=mRNA_Ecto-sp13_S_contig5969.16538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3607bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5969:4159..7765- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5969:4159..7765- >mRNA_Ecto-sp13_S_contig5969.16538.1 ID=mRNA_Ecto-sp13_S_contig5969.16538.1|Name=mRNA_Ecto-sp13_S_contig5969.16538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5969:4159..7765- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |