mRNA_Ecto-sp13_S_contig5969.16537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5969.16537.1
Unique NamemRNA_Ecto-sp13_S_contig5969.16537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5969.16537.1 vs. uniprot
Match: D8LBE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE8_ECTSI)

HSP 1 Score: 691 bits (1783), Expect = 1.010e-244
Identity = 353/389 (90.75%), Postives = 359/389 (92.29%), Query Frame = 1 
Query:  196 HRYDGGANMRNVSRGGGRGFPGGGRGRTMAKSGAREKGDRYGGAEPVKSSGRMSITFTRQDGGGGAKQRGRXXEYDRMXXXXXXGRGEALKGGAGRDRDGMKGDSFLPIGRHKEKDSDVGGSRTKRRDVISHSAAGDSEDKLGGGSSYRERVDRSSNKLVAANKKDEEVIKSSWVHQMQKAKERPNLVHWRDELVAITKDSSEDFEDATLSVELMRVRCDVCYHEKSDGDKFCWNEKCWMSPVFSGYCRTGATDEAIAPTPVPQSAGYINTFGRETLIDPALTSALQAPVKWLETKRKRKLEAHEVFSEDPALYRWQCWASLSKNPNSKDPTFVEDPRFRPAGRGNSGADNGRNVSSSKPSPETGGDMIRHDEGDEMHVDESASGRGWA 1362
            HRYDGGA MRNVSRGGGRGFP             REKGDRYGG EPVKSSGRMSITFTRQDGGGGAKQRGR  EYDRM  XXX GRGEALKGGAGRDRDGMKGDSFLPIGRHKEKDSDVGGSR KRRDVISH +AGDSEDK+G G SYRERVDRSSNKLVAANKKDEEVIKSSWVHQMQKAKERPNLVHWRDELVAITKDSSEDFEDATLSVELMRVRCDVCYHEKSDGDKFCWNEKCWMSPVFSGYC TGA DE IAPTPV QSAGYINTFGRETLIDPALTSALQAPVKWLETKRKRKLEAHEVFSEDPALYRWQCWASLSKNPNSKDPTFVEDPRFR AGRG+S ADNGRNVSSSKPSPE+GGDM+RHDEGDEMH+DESASGRGWA
Sbjct:  255 HRYDGGAKMRNVSRGGGRGFPXXXXXXXXXXXXXREKGDRYGGGEPVKSSGRMSITFTRQDGGGGAKQRGRGGEYDRMREXXXGGRGEALKGGAGRDRDGMKGDSFLPIGRHKEKDSDVGGSRAKRRDVISHCSAGDSEDKVGAGGSYRERVDRSSNKLVAANKKDEEVIKSSWVHQMQKAKERPNLVHWRDELVAITKDSSEDFEDATLSVELMRVRCDVCYHEKSDGDKFCWNEKCWMSPVFSGYCHTGANDEVIAPTPVQQSAGYINTFGRETLIDPALTSALQAPVKWLETKRKRKLEAHEVFSEDPALYRWQCWASLSKNPNSKDPTFVEDPRFRAAGRGDS-ADNGRNVSSSKPSPESGGDMVRHDEGDEMHMDESASGRGWA 642
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BLAST of mRNA_Ecto-sp13_S_contig5969.16537.1 vs. uniprot
Match: A0A6H5JHP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP0_9PHAE)

HSP 1 Score: 402 bits (1034), Expect = 3.100e-133
Identity = 212/227 (93.39%), Postives = 214/227 (94.27%), Query Frame = 1 
Query:  196 HRYDGGANMRNVSRGGGRGFPGGGRGRTMAKSGAREKGDRYGGAEPVKSSGRMSITFTRQDGGGGAKQRGRXXEYDRMXXXXXXGRGEALKGGAGRDRDGMKGDSFLPIGRHKEKDSDVGGSRTKRRDVISHSAAGDSEDKLGGGSSYRERVDRSSNKLVAANKKDEEVIKSSWVHQMQKAKERPNLVHWRDELVAITKDSSEDFEDATLSVELMRVRCDVCYHEKS 876
            HRYDGGANMRNVSRGGGRGFPGGGR RTMAK G REKGDRYGG EPVKSSGRMSITFTRQDGGGGAKQRGR  EYDRM  XXX GRGEALKGGAGRDRDGMKGD+F+PIGRHKEKDSDVGGSRTKRRDVISHSAAGDSEDKLG G SYRERVDRSSNKLVA NKKDEEVIKSSWVHQMQKAKERPNLVHWRDELVAITKDSSEDFED TLSVELMRVRCDVCYHEKS
Sbjct:  279 HRYDGGANMRNVSRGGGRGFPGGGRSRTMAKGGVREKGDRYGGGEPVKSSGRMSITFTRQDGGGGAKQRGRGGEYDRMREXXXGGRGEALKGGAGRDRDGMKGDNFIPIGRHKEKDSDVGGSRTKRRDVISHSAAGDSEDKLGAGGSYRERVDRSSNKLVAVNKKDEEVIKSSWVHQMQKAKERPNLVHWRDELVAITKDSSEDFEDVTLSVELMRVRCDVCYHEKS 505
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BLAST of mRNA_Ecto-sp13_S_contig5969.16537.1 vs. uniprot
Match: A0A835Z2T4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2T4_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.610e-32
Identity = 77/212 (36.32%), Postives = 102/212 (48.11%), Query Frame = 1 
Query:  697 EVIKSSWVHQMQKAKERPNLVHWRDELVAITKDSSEDFEDATLSVELMRVRCDVCYHEKSDGDKFCWNEKCWMSPVFSGYCRT---------------------GATDEAIAP------------TPVPQSAG----------------YINTFGRETLIDPALTSALQAPVKWLETKRKRKLEAHEVFSEDPALYRWQCWASLSKNPNSKD 1185
            EV +  W  Q+Q+ +ERPNL HWRD++ A  ++  +D E   L+ +LM +RC VCY EK DGD+FCWN +C  SP+F  + +                      G  D+++               P  Q +G                Y NTF R TL+D AL   L APVKWLE KR++           PALYRWQCWASL  +P   D
Sbjct:  563 EVARRQWDVQIQRGRERPNLTHWRDQIDASAREPDQDPEAVDLNFDLMPLRCCVCYVEKPDGDRFCWNSECLASPIFEEFVKPIPGVPSASLVKEDHKDASKGFGGGDKSVGVKKDPDAMDTDEGAPRAQRSGSLTTKGEEGDEEKKLPYENTFKRTTLVDDALAYVLHAPVKWLEAKRRKGTPFESFSLASPALYRWQCWASLEDDPAVSD 774
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5969.16537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBE8_ECTSI1.010e-24490.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHP0_9PHAE3.100e-13393.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z2T4_9STRA2.610e-3236.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5969contigEcto-sp13_S_contig5969:3..3079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1365
Hectar predicted targeting categoryother localisation
Exons6
Cds size1365
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5969.16537.1prot_Ecto-sp13_S_contig5969.16537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5969 3..3079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463829.602525-CDS-Ecto-sp13_S_contig5969:2..681681463829.602525-CDS-Ecto-sp13_S_contig5969:2..68Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5969 3..68 +
1681463829.6127367-CDS-Ecto-sp13_S_contig5969:442..10661681463829.6127367-CDS-Ecto-sp13_S_contig5969:442..1066Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5969 443..1066 +
1681463829.6230145-CDS-Ecto-sp13_S_contig5969:1221..14071681463829.6230145-CDS-Ecto-sp13_S_contig5969:1221..1407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5969 1222..1407 +
1681463829.6336238-CDS-Ecto-sp13_S_contig5969:1932..21241681463829.6336238-CDS-Ecto-sp13_S_contig5969:1932..2124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5969 1933..2124 +
1681463829.6452746-CDS-Ecto-sp13_S_contig5969:2519..26751681463829.6452746-CDS-Ecto-sp13_S_contig5969:2519..2675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5969 2520..2675 +
1681463829.6566658-CDS-Ecto-sp13_S_contig5969:2938..30791681463829.6566658-CDS-Ecto-sp13_S_contig5969:2938..3079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5969 2939..3079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5969.16537.1

>prot_Ecto-sp13_S_contig5969.16537.1 ID=prot_Ecto-sp13_S_contig5969.16537.1|Name=mRNA_Ecto-sp13_S_contig5969.16537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=455bp
SRNRSSRSTARTAHSSSDSSGQDDDGDEHDNGRSTRRRRRAPMDDDSDFE
DANQGDDEDDDGDDDHRYDGGANMRNVSRGGGRGFPGGGRGRTMAKSGAR
EKGDRYGGAEPVKSSGRMSITFTRQDGGGGAKQRGRGGEYDRMRERERGG
RGEALKGGAGRDRDGMKGDSFLPIGRHKEKDSDVGGSRTKRRDVISHSAA
GDSEDKLGGGSSYRERVDRSSNKLVAANKKDEEVIKSSWVHQMQKAKERP
NLVHWRDELVAITKDSSEDFEDATLSVELMRVRCDVCYHEKSDGDKFCWN
EKCWMSPVFSGYCRTGATDEAIAPTPVPQSAGYINTFGRETLIDPALTSA
LQAPVKWLETKRKRKLEAHEVFSEDPALYRWQCWASLSKNPNSKDPTFVE
DPRFRPAGRGNSGADNGRNVSSSKPSPETGGDMIRHDEGDEMHVDESASG
RGWA*
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mRNA from alignment at Ecto-sp13_S_contig5969:3..3079+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5969.16537.1 ID=mRNA_Ecto-sp13_S_contig5969.16537.1|Name=mRNA_Ecto-sp13_S_contig5969.16537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5969:3..3079+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCGTAATCGCAGCTCGCGCTCCACGGCGCGGACTGCTCACTCCAGTTC
AGATTCCAGCGGCCAGGTAAAGTAACCGTTAAATCTGTGTTGCGTTTTAG
TTTCCAAGACGTACTGTGTTGCGAAGCCCAGAAGACACTGCGTGCTCGGC
CGCGTTTTCTATTCTTCAGGCTGTCAGCATTATAGAACATGGATGATATC
CTTGCTGGCGAGTTCACGTTGGTGCACTTCCAAATGCCACTCGACTACAT
CAAGCTTTTTGAGATGACGCCAACAGGCAACCCGAGTTGCTTTGGTTCAC
ATCGTTTGCCAAAATATTTCAACCTTCGCCAGCTAGGATTGCAAATCGGT
GTTGTGGCCTGTCCGTGATGTGCTTGACGTTGTGATCTTCTACGTTACAT
TTTTTTTTTTGTGCATGGATGTGTTTCTGCCTTCCTGGAGGACGATGACG
GGGACGAACATGACAACGGCCGCTCCACTCGCCGCAGACGAAGGGCTCCC
ATGGATGACGATAGCGATTTTGAGGACGCTAACCAAGGGGATGACGAGGA
TGATGATGGAGACGACGACCACCGCTATGACGGCGGGGCCAATATGAGAA
ACGTGTCGAGGGGCGGTGGCAGGGGGTTCCCTGGTGGAGGGAGGGGTCGG
ACAATGGCGAAGAGCGGGGCGAGGGAGAAAGGGGACAGGTATGGAGGGGC
CGAACCTGTTAAGTCTTCTGGGAGGATGTCTATTACGTTCACACGGCAGG
ATGGAGGTGGCGGTGCCAAGCAGAGGGGAAGGGGCGGCGAGTACGATAGG
ATGAGGGAGCGTGAGCGGGGCGGCAGGGGGGAAGCACTCAAAGGTGGAGC
CGGCAGGGATCGGGATGGAATGAAAGGAGACAGCTTCTTACCGATCGGCA
GGCACAAGGAGAAGGACTCTGATGTTGGAGGCTCCCGCACCAAGAGAAGG
GACGTGATTTCCCACTCTGCTGCTGGTGATTCAGAAGACAAACTGGGAGG
GGGCAGCTCCTACAGAGAGCGTGTGGACCGCTCGAGCAACAAGCTCGTTG
CCGCGAACAAAAAGGTTGGGCGCTGTGTTGGGTCTGTCTCTAAACGTGCC
GAGGCACTGCTGGGTGGTCGAAACGCCATCTGTACCTGCCATTTGATGCT
ATTGATGCTTGAGTTGCGTGGCTAATGGATTATCTAAATAAACTTCACCG
CCCGTTGTTCTACCGTTAGGACGAGGAGGTGATAAAGTCGTCATGGGTTC
ACCAGATGCAGAAGGCGAAAGAGCGGCCGAATCTGGTGCATTGGCGCGAT
GAACTAGTGGCTATCACGAAGGACAGCAGCGAGGACTTTGAGGATGCCAC
ACTTAGCGTGGAGCTCATGAGGGTGCGGTGCGATGTGTGCTACCACGAGA
AGTCGGTGAGTTCCTTCGGTTTGCGTGGAAGTCAACAGCTGTGTTCGGCT
CCTTGCTATCGGGGTACTCCACGACGTTGGCGCCCCTAACATGGCGGATG
GAGACTGAGAAAAGAATTATTCCAGAGTAGAATGTTTGATGTGTTTCATG
TGTTGGGCGTACATTTTGCAATACAAGATCAACGTTAGGCGTCGACCCAA
CAACCCAACCCTAAGCCTCACCCCAACCCACTCCCAAATGCGGCTATATC
GCGCGTTCTGGACGACGTGGGGAAATGGCCAAATAATGTGTTGATCAGCC
TTTGTATGGCATGTTACGGGTGGCAAATGGAGGCGGTAAAGGCTACTGCT
TTGCCGCGGTTGTGTAGTTGCTAATTCACCAGAGATGAAGTGTTCGCATC
ATAAGCGTAACACACCGCAACCGTTTCAGATATGATTTTTCGAACAACTG
CAGAAAATGTTGACCAATCCTTTTCCTTGCCGCTCAATAACCCCTGCCTT
GGGCGCAACATTCGTACGTTTATTCCGCAGGATGGCGACAAATTTTGCTG
GAACGAAAAGTGCTGGATGTCGCCTGTTTTCTCTGGCTACTGTCGCACAG
GCGCGACTGACGAAGCGATCGCGCCGACCCCTGTACCGCAGAGTGCGGGA
TACATCAATACGTTCGGGAGGGAGACCCTCATCGACCCGGCGTTGACCAG
CGCCCTGCAGGCTCCTGTGAAGGTAGATTCTTCTAGATTGGCATCCACCT
GTTCGGATGTTCGTTGTAAGGTATCACTTCTGCGTACTACCAACCAGAGT
TTTTTGTTGAAGAAAAGACGATAGCAGTCCATCCTGCTGAGCAATGCTCA
ACTTGGACATTTTCATGCTCGTTTTACGCTGCGCGTTGATAAATCTGTCA
GTTTTTCTGCAAAACCCTTCATGTGTTCTCTGCTGGCGGGATAGATTTGT
CCAGAGCTCGATTTGTCAATCCTGCACTAGAAGTTTTTTTTTATCGTGGT
GAGACAGTGAACTGGCCCTTACTTCACGCCGTTAAGTTGGGACTAAGATC
CATCGAGCAAGCATCCCCTGGTCGCACCAACCAACCCACACTGCTGTATT
GGCTTGTTTTGAATCAGTGGCTGGAAACCAAGCGGAAGAGGAAGCTCGAG
GCCCACGAGGTGTTCTCGGAAGACCCTGCGCTATACCGCTGGCAATGCTG
GGCTAGCCTAAGCAAGAACCCCAACTCCAAAGACCCCACATTTGTCGAAG
ACCCAAGGTTCCGACCTGCAGGGGTGAGACCAAACGCTGTGCGTCCTTCA
GTGTTGTGCGAATGTGGTTGAAGTTGTGCCAAGCGTCTCTGGGTGTGTAG
GGAGATCTCGTGCTCCCTTCTGTACATCTGTTGTCGGATAGTACAATCGA
ACGAGCCAGGTTTTTATCTTGTTTCAGTGAACTACGCCTGAAGTCCAGTG
TCGCGACACGTTTGCGGATTCTGGCGAACCAATATCCATGTTCACCACAG
GCGTCCATGTCTCTGCATGTGTACCGTGTCTTGCAGAGGGGCAACAGCGG
CGCTGACAATGGTCGGAACGTGTCGAGTTCAAAGCCATCACCCGAGACCG
GTGGAGACATGATCCGCCACGACGAAGGAGATGAGATGCACGTGGACGAG
TCTGCCTCTGGCAGAGGTTGGGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5969:3..3079+

>mRNA_Ecto-sp13_S_contig5969.16537.1 ID=mRNA_Ecto-sp13_S_contig5969.16537.1|Name=mRNA_Ecto-sp13_S_contig5969.16537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5969:3..3079+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCGTAATCGCAGCTCGCGCTCCACGGCGCGGACTGCTCACTCCAGTTC
AGATTCCAGCGGCCAGGACGATGACGGGGACGAACATGACAACGGCCGCT
CCACTCGCCGCAGACGAAGGGCTCCCATGGATGACGATAGCGATTTTGAG
GACGCTAACCAAGGGGATGACGAGGATGATGATGGAGACGACGACCACCG
CTATGACGGCGGGGCCAATATGAGAAACGTGTCGAGGGGCGGTGGCAGGG
GGTTCCCTGGTGGAGGGAGGGGTCGGACAATGGCGAAGAGCGGGGCGAGG
GAGAAAGGGGACAGGTATGGAGGGGCCGAACCTGTTAAGTCTTCTGGGAG
GATGTCTATTACGTTCACACGGCAGGATGGAGGTGGCGGTGCCAAGCAGA
GGGGAAGGGGCGGCGAGTACGATAGGATGAGGGAGCGTGAGCGGGGCGGC
AGGGGGGAAGCACTCAAAGGTGGAGCCGGCAGGGATCGGGATGGAATGAA
AGGAGACAGCTTCTTACCGATCGGCAGGCACAAGGAGAAGGACTCTGATG
TTGGAGGCTCCCGCACCAAGAGAAGGGACGTGATTTCCCACTCTGCTGCT
GGTGATTCAGAAGACAAACTGGGAGGGGGCAGCTCCTACAGAGAGCGTGT
GGACCGCTCGAGCAACAAGCTCGTTGCCGCGAACAAAAAGGACGAGGAGG
TGATAAAGTCGTCATGGGTTCACCAGATGCAGAAGGCGAAAGAGCGGCCG
AATCTGGTGCATTGGCGCGATGAACTAGTGGCTATCACGAAGGACAGCAG
CGAGGACTTTGAGGATGCCACACTTAGCGTGGAGCTCATGAGGGTGCGGT
GCGATGTGTGCTACCACGAGAAGTCGGATGGCGACAAATTTTGCTGGAAC
GAAAAGTGCTGGATGTCGCCTGTTTTCTCTGGCTACTGTCGCACAGGCGC
GACTGACGAAGCGATCGCGCCGACCCCTGTACCGCAGAGTGCGGGATACA
TCAATACGTTCGGGAGGGAGACCCTCATCGACCCGGCGTTGACCAGCGCC
CTGCAGGCTCCTGTGAAGTGGCTGGAAACCAAGCGGAAGAGGAAGCTCGA
GGCCCACGAGGTGTTCTCGGAAGACCCTGCGCTATACCGCTGGCAATGCT
GGGCTAGCCTAAGCAAGAACCCCAACTCCAAAGACCCCACATTTGTCGAA
GACCCAAGGTTCCGACCTGCAGGGAGGGGCAACAGCGGCGCTGACAATGG
TCGGAACGTGTCGAGTTCAAAGCCATCACCCGAGACCGGTGGAGACATGA
TCCGCCACGACGAAGGAGATGAGATGCACGTGGACGAGTCTGCCTCTGGC
AGAGGTTGGGCATGA
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