mRNA_Ecto-sp13_S_contig5968.16536.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5968.16536.1
Unique NamemRNA_Ecto-sp13_S_contig5968.16536.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5968.16536.1 vs. uniprot
Match: D7G6V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V9_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 8.840e-80
Identity = 183/203 (90.15%), Postives = 185/203 (91.13%), Query Frame = 1 
Query:  322 MAVREEMWAQAARDRDALEAELSLRHEAERSRFLEEAGERDSEIVEEVKRKMAEEMERDRELYAQRAALAEEGQELAREERNQLQAEKESLLRQLKETMEMDDASRRRIILKFKAREHAMRKNFEAELREARGEASKSGEISEAPAEEAAEEEACLPSPDALPAKRPRSTIXXXXXXXXXXXXXXXXXXXXXXAVKSPGGGLA 930
            MAVREEMWAQAARDRDALEAELSLRHEAERSRFLEEAGERDSEIVEEVKRKMAEEMERDRELYAQRAALAEEGQE+AREERNQLQAEKESLLRQLKETMEMDDASRRRIILKFKAREHAMRKNFEAELREARGEAS SGEISEA     AEEEACLPSP+           XXXXXXXXXXXXXXXXXXXXX AVKSPGGGLA
Sbjct:    1 MAVREEMWAQAARDRDALEAELSLRHEAERSRFLEEAGERDSEIVEEVKRKMAEEMERDRELYAQRAALAEEGQEIAREERNQLQAEKESLLRQLKETMEMDDASRRRIILKFKAREHAMRKNFEAELREARGEASTSGEISEA----TAEEEACLPSPNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVKSPGGGLA 199
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5968.16536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6V9_ECTSI8.840e-8090.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5968contigEcto-sp13_S_contig5968:2447..8651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2139
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_012050.1
Cds size768
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5968.16536.1prot_Ecto-sp13_S_contig5968.16536.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5968 3653..8486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463829.4997637-UTR-Ecto-sp13_S_contig5968:2446..36521681463829.4997637-UTR-Ecto-sp13_S_contig5968:2446..3652Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5968 2447..3652 -
1681463829.5733342-UTR-Ecto-sp13_S_contig5968:8486..86511681463829.5733342-UTR-Ecto-sp13_S_contig5968:8486..8651Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5968 8487..8651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463829.5108798-CDS-Ecto-sp13_S_contig5968:3652..39171681463829.5108798-CDS-Ecto-sp13_S_contig5968:3652..3917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5968 3653..3917 -
1681463829.5198686-CDS-Ecto-sp13_S_contig5968:4331..44231681463829.5198686-CDS-Ecto-sp13_S_contig5968:4331..4423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5968 4332..4423 -
1681463829.5292869-CDS-Ecto-sp13_S_contig5968:4994..51081681463829.5292869-CDS-Ecto-sp13_S_contig5968:4994..5108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5968 4995..5108 -
1681463829.5420809-CDS-Ecto-sp13_S_contig5968:5887..60311681463829.5420809-CDS-Ecto-sp13_S_contig5968:5887..6031Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5968 5888..6031 -
1681463829.5534234-CDS-Ecto-sp13_S_contig5968:6835..69831681463829.5534234-CDS-Ecto-sp13_S_contig5968:6835..6983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5968 6836..6983 -
1681463829.5634103-CDS-Ecto-sp13_S_contig5968:8481..84861681463829.5634103-CDS-Ecto-sp13_S_contig5968:8481..8486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5968 8482..8486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5968.16536.1

>prot_Ecto-sp13_S_contig5968.16536.1 ID=prot_Ecto-sp13_S_contig5968.16536.1|Name=mRNA_Ecto-sp13_S_contig5968.16536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=256bp
MSADEAVLAERTRQHREMRLKGNKDLKDRVEELKLKLQNERERMQKEFES
QLMAVREEMWAQAARDRDALEAELSLRHEAERSRFLEEAGERDSEIVEEV
KRKMAEEMERDRELYAQRAALAEEGQELAREERNQLQAEKESLLRQLKET
MEMDDASRRRIILKFKAREHAMRKNFEAELREARGEASKSGEISEAPAEE
AAEEEACLPSPDALPAKRPRSTIKSKSKIASSSASPSMTAAPTMAAVKSP
GGGLA*
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mRNA from alignment at Ecto-sp13_S_contig5968:2447..8651-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5968.16536.1 ID=mRNA_Ecto-sp13_S_contig5968.16536.1|Name=mRNA_Ecto-sp13_S_contig5968.16536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6205bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5968:2447..8651- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCTTGCGCTGTGGGTCCTCTCGACGGCCTCCGTCAGCACCGCCACGCT
TGAGGCTCGCACCGACGCTACCGAGAGAAGTATTCTAGGCAAAAAGGTGC
AAAAATCGGATGTGATACGGGTTCAGGATGCCAGGCTGAAGCGATTGGAG
GAGCGCGTTCAAAAGATGAGGTGCGTTGTACAGGAAAAACAGTGTAGCAG
GGCCAACGACATGGAGGATGAACTTGCTTCCTCGTTTGGTATCATGATTG
GCGCGGCTATCGTTTGATCCGAGATGCATTTCACAACGGCAGCACCGCGT
TACAAAGAACATCTTGGGTGGTACTCCAGAAGGCATTCTGTTCCAGGGAG
GTGTTGCGTTGAGCGGATTGTTCCGTTGTCGCCAACACTGGAAACTAGAA
ACACCAACGGGAAGAAAGAGTGTATGAACCCGTTTGAAACTCAGAAACTC
AGGTTTATGAATACAACGAGCAGGGAGGTTGCTCGTTGGTTGATGGGTTT
TGGGGCTGTTTCCAACGCTGCACGTGGCGAACCCAGATTGAACACATTTT
TAAGAGGGATCCAATGCGGGTTTTGTGGCAGCAAAGGCTAGTGTCGTGTA
ATGGTTATTCATTTGCACAGATGCCGAATCGAGATGTACAAAAGCAGGAA
GACCCGGATGCGGCGGAATCGCTGTTGAGAGTTGAGAGGTGACTTATCCA
TCGTCACCCTATTCCATTGTTAATCTGTTTCCGACTCTTTTTTATGATGG
AGATGGACACGTTGTGTCATATTAAGAAAATAAAAAGAACAAAAACAAAA
GTTGAGCGGTGAGGCACTAGGCCAGGTGCATGTATTTTGAGCAACGGAGA
TGGAACAAGACAAAAGACAACACATACCCTTCAACTTTGGTTATATCTCA
AACGGGTTGTCTTTGCTGTGTTGTTCGCACATATATTTTATTTTCATGTT
CTGTAACAAAGAAATACCAACTGTTCCTCAGCGACGTTACGCAATAAAGA
GGCAAATTTGAGAAAGTCAGGGGCGCCGCTCATCCTCTCACTTTTTAATT
GGCCAACCCTGGTTTGCATGCAAAAAAACAGAGATGAGAGAGTCACCTGT
TGAGACTCCAACCACCTGTCCAGCAGATATCATTTGCGCCCGTTCGTTCT
CCGATAAGCTGGTCGTGAATAATTAGGTAGTGACCACTGCTGTCGCTAAT
CGACATACACGATGACGAGACACAAATTTCCCTTCCTGTTTACAAGGAGT
GGCAACCCCGACCTTCGTGGGAGTGATGCCACAGCCTGTTCGATCCCATA
CTACCAATGAGTAGAGGAATTGACGTGAATTTACATATGTATTGCACCAT
GCGGAAGCCGTAAGATCTGCACGTGTACACGAAGCTGAGCATCAGCAGGT
GGCGCCAGAGGGCGTTTTCAGCATACGTTTAGGACCCCCACCAAACCAGT
AGCTATCGCATCCCCTCGGAACATGCGAACCATACTACTCTGCTGGTGCA
ACCTGATATAACCCCGAAATATGGTCACACGACGGTGCCTGTCTCGTGTG
CAACCAATGATAACGGTGCACCTGAATCATCATGTTGGTCCAACCGAATC
TCACCAGGTCGTCCTGCTGCTGCTGTCGCCGCCGTTGCTGCTGCCCTGTA
CTTTGTCCACACTTTCAGCGCGGATGAGGCGGTTCTAGCGGAGCGAACAC
GCCAACACCGCGAGATGCGGCTAAAGGGGAACAAGGACCTGAAAGACAGG
GTGGAAGAGTTGAAACTCAAGCTGCAGAACGAGAGGGAACGGATGCAGAA
GGAATTCGAGAGCCAGGTCAGAGTTCAGATCACTCCAAAAGTATTCAATG
CTCGTGCATCGGGAGGCACAAGTCTTGATGACTAAGAAATACTACTATTT
ATCTTGTTGTGTTGCCTGTTGCGTGAAACTTGGCTGCGTCGGCTGCGCGA
TTCGCCTGACCACTTGCGTCTTTGAGCGTTTGCTGAGACTCCACACTTTG
GGCACATGTACCCATGTACGACGCCGAAACCACACATGTAACCCCCACAA
CATCGCACTAAATATGCATGATACAGCAGTGCAGCATTCTACGTGTTGAG
TGTTTCCATGCTTGTGGATACGAAACAACATATGCATGCACGACGTGCGC
CACGATGGCCATGGCAAGATCAAAGAGACAGCAAAAGCCAATAGAGTAGT
GGAATGTTTTTCTAGGCGCTATTTTCTGTACCGCCGTCATGCAGCTGTAC
GGCAGAGCGATGTACCTTACAGCAGTAGAGGAGCTGTGAATACGGCACCG
GAACCGCGAAAGCCGTGTAATGGTATGGCTGAACAACACGCACCAACATG
AGGTGCCTCAATTATCCGCAGCATCGGGGCTGGTTTTGCACCCATGGAAA
TAGGCATGGTTTTGTTCGGTGGCGCCACACTCGCTAGTGCACTTCCTTGG
CTGGAGGAATGCATACCATCGGTTAGTATTTTCTCCATCTCTTCACGCGC
CGGCTTTTGTTCGTGAACGTCTAGATGCCCGTCCTTGCTCCCTCCGTCGC
CTTGCCCTTCCCCTTCTTCGCTCACTGCCCCCGGTGCTGTTGGTCCTCTA
CCTCTTTTGTACTCTTGTAGTTGATGGCGGTGCGGGAAGAGATGTGGGCC
CAGGCGGCCAGGGACAGGGATGCGCTCGAGGCGGAGCTTAGCTTGAGGCA
CGAGGCGGAGCGGTCGAGATTCCTGGAGGAGGCCGGCGAGCGCGACAGCG
AAATCGTAGAGGAGGTGGGTGCACTGTTGTTGTGTTATTTTAGCTGCAGT
AGCTATGCAAGCCTGTCGCTCTGCCAGGCTTGGTGGACTTGCACAGCGCT
GTTGAGAATAAACGATCTTGAAAGTCTTCTTTGTATGCGCATTGCAAGGA
CGCAAGGTCAATGTTGTCAACAGGAAACTGTAATATCTCTCTATGAGCCT
TTGTATACATTGATGCTTGAGGTTGGGTACCATTCTCCAGTAGGTTCCCG
CGACACGCTCGGACTAAGTGAGTGCACTCTATTCGAAATGTCGTACGATG
GTACATCATCCGCACGATGGGGTCGTACGGGTTTTCGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGT
TGGTGTGGTCAGCACGCACCACCAGGGAACACAAGCACAACTGACATGAA
ACGGCTCCGCAACTCTTCACTTTCTTAGTTGTTCGTTTACATACATCGAC
GACACGAATTCAAGAGTCCATGTTGAACGAGCTATTTCTAGCTTGTCGGT
GAAACAACACCTGTAACTGTCCGTCATGGGTGACCCCTGCCAGGTGAAAC
GCAAGATGGCGGAGGAAATGGAACGGGATCGGGAGTTGTACGCACAGCGG
GCGGCGTTGGCGGAAGAGGGCCAGGAACTCGCTCGCGAAGAAAGAAATCA
GCTCCAGGTGGGCCAAGAGACTGGTTATTTCGGCTATGACTCGCTTGCGC
ACTTCGTATCGAACACTTGCGTGCGATGCACGTAGCAAACACAGCTTGTC
TCTCGCTTTGAAGGACACCAACAGTTGCCTAGTTTTTCTCTCAGGTACGC
CGCGAACATAGCAGTTCGTGGTTTACCTCGCACATGTTTGCCAGAACGTT
TCTCTCCTTCGAACAGGCTGCCGCCGCGTCTGAAATGACGAGTCGAAACG
GGGGAAAGCCCTTTCAATTGCTTCCCAGTAGGATGCGATGCTTCAGCTTG
TTCCATTAACTCAATCACAGTATTGTGGTGATGCACTGTTCTACGAAGTC
CTCATTTCAGCACGAATACTCCACCACCGAAGCATCGGGTGTGAATGTCC
AAGCACCGCGACATGACATTGTCCCATAGTTTCCGCCAAGACAATTCATA
GATTATGTGGCGAATGTAATGCTGCGGTTTTACTTCGAACCCCGAGCCCA
TTCATACCCCAGCCTTAGCCATAAGTTAACCGTTAACCTTCATACTCGCC
CTGATCTCGACATTTCCGACACTTTCAGGCGGAGAAGGAAAGCCTTCTAC
GCCAGCTTAAGGAGACGATGGAGATGGACGACGCCAGCCGCAGGAGGATC
ATCCTCAAGTTCAAAGCCAGGTATGTGCGGTGGACGCCTACTTTGGCTGT
TGTTGTTCGTTGCACACACATCTAGTAACGTGATTCTCGTCCTCGGATGG
CTTGTCTGTGTAAGGGTGTCGGGGGTGGCAGGTTCACTTGCCTAAAGTAA
CCCGTCAACTCAGTGGCTCCTGCTGTGATGATACTGTACAAGTAACCCAT
CAGTCTACTTGGTGAGAAAACATGCGCCGCGAAGGATCGCGAGATAGATT
GCGACAATGATGGGCGAACTCGAGGTAGGGAACGGTTGGCTCCAATTGAT
TTCGCGACTTCCTGACCGGTGCAAGCAAAGAGCAAGGTTTATTGTTGCCT
CCGCTTCCAGTGTGCCCCAAAGAGTGTGTTTTGACGACCTCCTCTAACTT
TATCCTAAGTTCACGCGAAAAACCTCATCACCAGGGAACACGCTATGCGA
AAGAACTTCGAGGCGGAGCTGAGGGAGGCCAGGGGTGAGGCGAGCAAAAG
CGGCGAGATTTCCGAAGCCCCGGCTGAGGAGGCGGCTGAAGAGGAAGCCT
GCCTGCCCTCGCCCGACGCCCTACCGGCCAAGCGACCACGATCGACAATC
AAATCGAAATCGAAGATTGCCTCTTCATCGGCCTCTCCAAGCATGACTGC
CGCTCCCACCATGGCTGCTGTCAAGTCTCCCGGCGGAGGATTGGCCTAAA
CAAGGGCTGCCTCCACCCTCGCGAGGCTGACCTTGAACCACCTCGCTGCC
CAAGTACAGCAGAAACGCCGTCGGGCGGCTGGACAATGATGATGATGATG
ATGATGATGGGCATCTCCTCAGAATTTGGTACCCACAGCCACGTCAGAGT
CCTTAGGCATCTGAGGATTAGGCCAGGGCGTGGCGCTTCACCCGTGGACC
CCGCCCGCAAGCCTGATATGATAGGATATGATATGCTTGCACAAAGGGAA
GCCGCGTATCGGTGGGGAAATGGTAGGGGTGCTCCTCTTGCCATGTGGCG
TTGGTGACCGGCATGAAATTCTGTCCGATACTAATGTGGATTATCTAGTT
CTCGGCATGTATCCAACAGAAGAAAAAGCTCCAGGTCGCACAGGTGGGGT
GGAAGGCTGCTGGCTACCATCGTGGGTTTAGTATATTGGCTGGAGTCAGT
CGTTCTGGGGATTCACGGCTGTGACACGTGACCATTCTCATATCGCGGTA
TAACCGTTGCCTGCACGTGGCCGGCGATAAGAGTATTGGATGTCGAGTTG
CCTACCAGGCGTTTAGCATGAAGCTTATTATGACCAGAGGTGCATACACA
GCAGGTAGTGGGCTAGCAGGTGTAACCCCGGCGTTGTGTCCAACAGATGT
TTATGTTTCGTGTGATGCGAGTTGATGTCTCAAGCAAGAGACAACGATTA
GATTTCGTTGCATGACTTTTTCTCCTAGCGTGAAATCGCGACCGTCGGCT
GGAAGGAAACAGACGGCATGTTTCGTAGCATAGAACGACAGACTTTGGGC
TAGCAGTGTTTGTGGGGTGTACGATACAGCAGACAGGTGGTGTCACTCAC
ACGACGGTACTGCCCTTCAAATCCAGCATTTTTGTCCAGTCCTCCGTGTC
CCGCACTCTCTCTCGTTTGGTGTTCGTGGTCGGATGATGATGATGACGAT
GTGTTTTACTTGGCTCTACCTACTGGGTACTACCGCTGTAGTCTGGGTTT
CCTCTCAAGTAGGCGACTGCTTTGCTCCCCTGTACGTCCATGTCACCAAT
ACAGTAGTAAACAGCAGTGGGAGCTCTTAAACTTGACTTTTACGTGTGTG
GGGCGGAGTCTCGATTTTTTTCGGTTTGCTAGGTTCATAATGCCCGACCT
TGTTTTCCGGCGGCGTTGAAGCGTTGTGTTGTGGACGGGTCAAACATCCC
TCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5968:2447..8651-

>mRNA_Ecto-sp13_S_contig5968.16536.1 ID=mRNA_Ecto-sp13_S_contig5968.16536.1|Name=mRNA_Ecto-sp13_S_contig5968.16536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5968:2447..8651- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGCGGATGAGGCGGTTCTAGCGGAGCGAACACGCCAACACCGCGA
GATGCGGCTAAAGGGGAACAAGGACCTGAAAGACAGGGTGGAAGAGTTGA
AACTCAAGCTGCAGAACGAGAGGGAACGGATGCAGAAGGAATTCGAGAGC
CAGTTGATGGCGGTGCGGGAAGAGATGTGGGCCCAGGCGGCCAGGGACAG
GGATGCGCTCGAGGCGGAGCTTAGCTTGAGGCACGAGGCGGAGCGGTCGA
GATTCCTGGAGGAGGCCGGCGAGCGCGACAGCGAAATCGTAGAGGAGGTG
AAACGCAAGATGGCGGAGGAAATGGAACGGGATCGGGAGTTGTACGCACA
GCGGGCGGCGTTGGCGGAAGAGGGCCAGGAACTCGCTCGCGAAGAAAGAA
ATCAGCTCCAGGCGGAGAAGGAAAGCCTTCTACGCCAGCTTAAGGAGACG
ATGGAGATGGACGACGCCAGCCGCAGGAGGATCATCCTCAAGTTCAAAGC
CAGGGAACACGCTATGCGAAAGAACTTCGAGGCGGAGCTGAGGGAGGCCA
GGGGTGAGGCGAGCAAAAGCGGCGAGATTTCCGAAGCCCCGGCTGAGGAG
GCGGCTGAAGAGGAAGCCTGCCTGCCCTCGCCCGACGCCCTACCGGCCAA
GCGACCACGATCGACAATCAAATCGAAATCGAAGATTGCCTCTTCATCGG
CCTCTCCAAGCATGACTGCCGCTCCCACCATGGCTGCTGTCAAGTCTCCC
GGCGGAGGATTGGCCTAA
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