mRNA_Ecto-sp13_S_contig59668.16534.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59668.16534.1
Unique NamemRNA_Ecto-sp13_S_contig59668.16534.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59668.16534.1 vs. uniprot
Match: D7FI72_ECTSI (4-hydroxyphenylpyruvate dioxygenase, plastid n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI72_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.570e-11
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = -1 
Query:  431 PNFVDIEGEEAREDFGLQRADHIVGNVWDMLEQ 529
            PNFVDIEGEEAREDFGLQRADH+VGNVWDMLEQ
Sbjct:  249 PNFVDIEGEEAREDFGLQRADHVVGNVWDMLEQ 281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59668.16534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI72_ECTSI1.570e-1196.974-hydroxyphenylpyruvate dioxygenase, plastid n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59668contigEcto-sp13_S_contig59668:311..839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size531
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463829.4032238-UTR-Ecto-sp13_S_contig59668:310..5271681463829.4032238-UTR-Ecto-sp13_S_contig59668:310..527Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig59668 311..527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463829.413455-CDS-Ecto-sp13_S_contig59668:527..8391681463829.413455-CDS-Ecto-sp13_S_contig59668:527..839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59668 528..839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59668.16534.1prot_Ecto-sp13_S_contig59668.16534.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59668 528..839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59668.16534.1

>prot_Ecto-sp13_S_contig59668.16534.1 ID=prot_Ecto-sp13_S_contig59668.16534.1|Name=mRNA_Ecto-sp13_S_contig59668.16534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MEQPSTNKPPHVYNSSVPTTRPCLSLNGSTTPYLTILPAFSTAPKPMARP
PQSNANHAFKTVAHKNCRLPHLFQHVPHVPHDMIRPLQPEILPRLLALDI
HEVR
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mRNA from alignment at Ecto-sp13_S_contig59668:311..839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59668.16534.1 ID=mRNA_Ecto-sp13_S_contig59668.16534.1|Name=mRNA_Ecto-sp13_S_contig59668.16534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=529bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59668:311..839+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCCAGCATGAGGGGCGGGGATTTTCAGCGCTCTCTGACCTCCCCCCTA
CGGCAGGCGGTCACCGCCGGGGCCGGAACCCTCACCATGCGCTGATGAAA
AAGTCTTAGTGGCGCCTCAAAAGTTTCGTAGCCTTGGGATGGCAAAGAGC
CATATCTTTTACTAGGTAAGGCCTAATCTACTACATCACTCAGTCAGCAG
TGGACTGAGAAGTCTAAATGGAACAGCCTTCAACTAACAAACCTCCCCAC
GTCTACAACAGCTCCGTACCAACTACAAGACCCTGTCTGAGCCTAAATGG
ATCAACTACCCCATATCTTACAATCCTCCCTGCGTTCTCAACAGCTCCAA
AACCAATGGCAAGACCCCCCCAATCAAATGCAAACCATGCCTTCAAAACT
GTGGCACACAAAAACTGCCGACTCCCTCACCTGTTCCAGCATGTCCCACA
CGTTCCCCACGATATGATCCGCCCGCTGCAGCCCGAAATCCTCCCGCGCC
TCCTCGCCCTCGATATCCACGAAGTTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59668:311..839+

>mRNA_Ecto-sp13_S_contig59668.16534.1 ID=mRNA_Ecto-sp13_S_contig59668.16534.1|Name=mRNA_Ecto-sp13_S_contig59668.16534.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59668:311..839+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACAGCCTTCAACTAACAAACCTCCCCACGTCTACAACAGCTCCGT
ACCAACTACAAGACCCTGTCTGAGCCTAAATGGATCAACTACCCCATATC
TTACAATCCTCCCTGCGTTCTCAACAGCTCCAAAACCAATGGCAAGACCC
CCCCAATCAAATGCAAACCATGCCTTCAAAACTGTGGCACACAAAAACTG
CCGACTCCCTCACCTGTTCCAGCATGTCCCACACGTTCCCCACGATATGA
TCCGCCCGCTGCAGCCCGAAATCCTCCCGCGCCTCCTCGCCCTCGATATC
CACGAAGTTCGG
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