mRNA_Ecto-sp13_S_contig5966.16533.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Match: A0A6H5KTG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTG8_9PHAE) HSP 1 Score: 436 bits (1122), Expect = 9.090e-150 Identity = 209/213 (98.12%), Postives = 210/213 (98.59%), Query Frame = 1
Query: 232 DTASRNARKQMDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENGKLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFLGNYYANAFVHYKPKDPQKWSKFID 870
D ASRNARKQMDQGRLVNNRKQPEGLPRFTEVGFKK TVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENGKLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTF GNYYANAFVHYKPKDP+KWSKFID
Sbjct: 255 DVASRNARKQMDQGRLVNNRKQPEGLPRFTEVGFKKTTVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENGKLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFHGNYYANAFVHYKPKDPEKWSKFID 467
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Match: A0A835YWU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWU1_9STRA) HSP 1 Score: 320 bits (820), Expect = 4.240e-104 Identity = 145/202 (71.78%), Postives = 171/202 (84.65%), Query Frame = 1
Query: 250 ARKQMDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENGKLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFLGNYYANAFVHYKPKDPQKW 855
AR+Q ++ R+ NN +QP GLPRFT+VGFKKI VPDDVWD++ TYY +NK++PK E+W K NV+TNN+EAPSYMVNLPE G LK IF GLRPILEEWSGVELV T+CYG+R YT SWLANHVDT+ATH +S I+ VDQ+V +DWPL I+DHAGND+NITM PRD+VLYESATCVHGRPSTF G +YAN F+HYKP DP KW
Sbjct: 259 AREQNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPETGPLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPSKW 460
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Match: A0A7S2UT49_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT49_9STRA) HSP 1 Score: 245 bits (625), Expect = 1.420e-74 Identity = 112/199 (56.28%), Postives = 148/199 (74.37%), Query Frame = 1
Query: 265 DQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENGKLKEQIFGGLRPILEEWSGV-ELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFLGNYYANAFVHYKPKDPQKWS 858
D+ R+ +N++ P +P FTEVGF+K+ P DVW++++TYY NKE E W +N +TN+ E+P+YM++LPENG++K +IF L+P LEEWSGV EL TACYG+RVY + L HVD +THA+SVI+ VDQDVEE W L IYDH+G+ +N+TM P D+VLYESA+C HGRP GNYY N FVHY+PKDP W+
Sbjct: 278 DRERIRHNKEHPSIVPHFTEVGFEKVRTPPDVWEMIQTYYHANKEHTALEVWDDSNTYTNHFESPTYMIHLPENGRMKPEIFRRLQPYLEEWSGVDELEGTACYGIRVYQEGAELRGHVDRISTHAISVIINVDQDVEEPWYLHIYDHSGSAHNVTMAPGDMVLYESASCQHGRPFPLKGNYYTNTFVHYRPKDPALWA 476
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Match: A0A7S2THP0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2THP0_9EUKA) HSP 1 Score: 218 bits (556), Expect = 1.340e-65 Identity = 105/197 (53.30%), Postives = 136/197 (69.04%), Query Frame = 1
Query: 262 MDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPE---NGKLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFLGNYYANAFVHYKPKD 843
++ R NR QP+ L FTE+GF+K +PDDVW+L+++YYE NK+S EKW N + N+ E+ +M+ LPE + K +IF GLRP LEEWSG EL T YG+RVY N ++L NHVD ATH VS IM + + WPL IYDH GN++NIT+ P ++VLYESATCVHGRPS F G YY NAF H++PK+
Sbjct: 133 QNEDRRQTNRIQPQNLKNFTELGFEKRKIPDDVWELLRSYYENNKDSIVLEKWPSTNPYINHWESVPFMIWLPELHTGDETKRKIFEGLRPHLEEWSGTELEHTDLYGMRVYKNNTFLENHVDRVATHVVSAIMHIADKQDIPWPLNIYDHYGNEHNITISPGEMVLYESATCVHGRPSLFQGEYYVNAFAHFRPKN 329
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Match: A0A7R9UF35_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF35_9STRA) HSP 1 Score: 194 bits (492), Expect = 3.580e-56 Identity = 98/209 (46.89%), Postives = 137/209 (65.55%), Query Frame = 1
Query: 256 KQMDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKESPKKEK---WSKNNVFTNNVEAPSYMVNLPENGK----------LKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFLGNYYANAFVHYKPKD 843
+ +D R+ N QP+ FT+VGF+K+ VP+D+W ++ Y+ K SPKKEK W K N++ N+ E P+YMVNL ++ + LK++I+ G +PI+E+W+G EL T+ YG+RVY N + LA+H D + S I+ VDQDV+E WPL IYDH+G +N+TM P D+VLYES CVHGRP G YYAN FVH++P D
Sbjct: 140 RAVDDQRIKMNVNQPKTQNHFTDVGFRKMRVPEDIWKEIQNYW---KWSPKKEKDEEWPKGNIYVNHWEVPTYMVNLEDHSEDPKGSLTGWQLKKRIWDGTKPIIEKWTGKELKSTSLYGIRVYHNGAILASHCD-RLPLVSSAIINVDQDVDEPWPLEIYDHSGKAHNVTMAPGDMVLYESHVCVHGRPFPLKGRYYANLFVHFEPMD 344
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Match: A0A7R9W969_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W969_9STRA) HSP 1 Score: 183 bits (465), Expect = 1.980e-51 Identity = 93/217 (42.86%), Postives = 138/217 (63.59%), Query Frame = 1
Query: 205 RHFGGGGDADTASRNARKQMDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENG------KLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFLGNYYANAFVHYKP 837
+HFG G A +Q+++ RL + +QP+ + +T+ GFKK+ P+++ L++ Y+ ENKE K E+WS +TN+ EAP+YMV++ + G LK +++ RP +EEW+G+EL T+ YG+RVYT + LA HVD + S I+ V QDV+EDWPL +Y G YN+TMKP D+VLYES + +HGR G YYAN F+H++P
Sbjct: 54 KHFGKKGHAC-------EQVEKDRLAMSIRQPQSVMNYTDTGFKKVRAPEELRKLLENYWNENKEKKKVEQWSTGYTYTNHWEAPTYMVSIEDGGLRGGGNSLKHKLWNAARPTIEEWTGMELAPTSLYGIRVYTEGAILAPHVD-RIPLISSAIINVAQDVDEDWPLEVYGRDGMAYNVTMKPGDMVLYESHSLIHGRVFPLKGRYYANIFIHFEP 262
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Match: A0A7S2PFM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PFM3_9STRA) HSP 1 Score: 180 bits (456), Expect = 3.370e-50 Identity = 90/208 (43.27%), Postives = 132/208 (63.46%), Query Frame = 1
Query: 238 ASRNARKQMDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKESP--KKEKWSKNNVFTNNVEAPSYMVNLPEN------GKLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFLGNYYANAFVHYKP 837
+S +A + + R+ + +QP G+ +T++GFKKI P VWD VK ++E NK+ + E W K N +TN+ AP+YMV++ + KLK +I+ + +EEW+G EL + + YG+RVYT S LA HVD + S I+ VDQDV+E WP+ +Y H G YN+TM+P D++LYES + +HGRP G YYAN FVH++P
Sbjct: 149 SSYSACQSTEDDRVEMSLRQPAGMQNYTDIGFKKIKAPPAVWDQVKVFWEANKDRKNWQDENWPKGNTYTNHWVAPTYMVSVEDGRLRGAGSKLKNRIWNAAQSTIEEWTGQELTKCSLYGIRVYTEGSILATHVD-RMPLVSSAIINVDQDVDEPWPIEVYGHDGKAYNVTMEPGDMILYESHSVLHGRPFPLKGRYYANIFVHFEP 355
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Match: A0A482SEQ1_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEQ1_9ARCH) HSP 1 Score: 182 bits (462), Expect = 4.240e-50 Identity = 91/204 (44.61%), Postives = 131/204 (64.22%), Query Frame = 1
Query: 265 DQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENG-----KLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFLGNYYANAFVHYKPKDPQKWSK 861
+ RL N QP +TEVGFKKITVP WD + +Y+ N ++ K EKW K +++ N+ AP M++ ++ +LK+ I+ ++PI+EEW G + T+ YG+RVY N S LA HVD + S I+QV QD++E WP+ +YDH+G +NITM+P D+VLYES T +HGRP G YYAN FVH++P D ++ +K
Sbjct: 73 EHARLEMNLDQPAKQHNYTEVGFKKITVPKSAWDPLLHFYKNNVQNEKPEKWPKGSIYVNHWVAPPSMISFEDSSLRGGVQLKQLIWNTVKPIIEEWVGRVVEPTSLYGIRVYKNQSILATHVD-RLPLVSSAIIQVAQDIDEPWPIEVYDHSGKAHNITMQPGDMVLYESHTVLHGRPFPMKGRYYANVFVHFQPVDHEQMNK 275
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Match: A0A7S3MEL8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEL8_9STRA) HSP 1 Score: 180 bits (456), Expect = 7.950e-49 Identity = 86/204 (42.16%), Postives = 132/204 (64.71%), Query Frame = 1
Query: 265 DQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENG-----KLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFLGNYYANAFVHYKPKDPQKWSK 861
++ R+ N+ QP +T +GFKK+ P W+ + ++YE NK+ K E W + N + N+ ++P+YMV+L + +K QI+ G++PILEEW+G +L T+ YG+RVY + + L+ HVD + S I+QV QD++E WP+ +YDHAG YN+TM+P ++VLYES T +HGRP G YAN FVH++P D + +K
Sbjct: 82 ERARMDMNKAQPSSQHNYTAIGFKKLKAPAAAWEPLISFYEANKDKEKLENWPRGNTYVNSWDSPTYMVSLEDQQLRGGMTVKAQIWAGVKPILEEWTGHKLEPTSLYGIRVYKDGAMLSTHVD-RLPLVSSCIIQVAQDIDEPWPIEVYDHAGKAYNVTMQPGEMVLYESHTVLHGRPFPMKGRTYANVFVHFQPVDHEIMNK 284
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Match: A0A7S1D171_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D171_CYCTE) HSP 1 Score: 178 bits (451), Expect = 1.440e-48 Identity = 84/200 (42.00%), Postives = 131/200 (65.50%), Query Frame = 1
Query: 256 KQMDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENGK------LKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFLGNYYANAFVHYKP 837
KQ ++ R+ + +QP+ + +T++GFKKI P+ V+ L+K ++++NK++ K E+W N +TNN +P+YMV++ ++ LK+ I+ R +EEW+G EL Q + YG+RVY S LA HVD + S I+ VDQDV+E WP+ +Y H G N+TM+P D+VLYES + +HGRP G +YAN F+H++P
Sbjct: 144 KQNERERVAMSLRQPQSMQNYTDIGFKKIKAPEKVFKLIKEFWDKNKDNRKLEQWGTGNTYTNNWASPTYMVSVEDSSLRGGGVVLKQHIWDAARETIEEWTGQELTQCSLYGIRVYEEGSLLATHVD-RLPLVSSAIINVDQDVDEPWPIEVYGHDGKATNVTMEPGDMVLYESHSVLHGRPFPLKGRFYANIFIHFEP 342 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5966.16533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5966.16533.1 >prot_Ecto-sp13_S_contig5966.16533.1 ID=prot_Ecto-sp13_S_contig5966.16533.1|Name=mRNA_Ecto-sp13_S_contig5966.16533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=291bp HSLPVVGRTGQAHAHQDAYARDGELDAELQDHPGVGPQQGDPGGGVKVPRback to top mRNA from alignment at Ecto-sp13_S_contig5966:5119..8651- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5966.16533.1 ID=mRNA_Ecto-sp13_S_contig5966.16533.1|Name=mRNA_Ecto-sp13_S_contig5966.16533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3533bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5966:5119..8651- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5966:5119..8651- >mRNA_Ecto-sp13_S_contig5966.16533.1 ID=mRNA_Ecto-sp13_S_contig5966.16533.1|Name=mRNA_Ecto-sp13_S_contig5966.16533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5966:5119..8651- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |