mRNA_Ecto-sp13_S_contig5964.16530.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5964.16530.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE) HSP 1 Score: 711 bits (1834), Expect = 8.470e-244 Identity = 424/491 (86.35%), Postives = 427/491 (86.97%), Query Frame = 1
Query: 325 HIVAPVPERGTSEERVAAGLSGATXXXXXXXXXXXXXXXXXASLVVDMSLEVRLKKAIERGNALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGEMREEQQRLLQANQPP-NPALGLRQAGPGFGVPTPPVAAAAAAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQATGRRLVEDFYRSKGIEPTLLQPTSSAIAAAAAA--GRPGGVVSRARLPDPMMPTEAMIGHLGRGRTMTGAGPAAAAA-GMRAPSGAIPQGARQVAQXXXXXXXXXXXXXXXXXXXVDVSGGELPQLLRAARCEHHLERFQRDQLDGEVLLEMERRDFDRMGVTEAEQSRILSALKHAGEGXXXXXXXXAA---GRPETSAQRVVTVVRGTSGGVATPVEVGDDDXXXXXX-DGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIRLRR 1773
HIVAPVPERG S ERVA+GLS AT XXXXXXXXASLVVDMSLEVRL+KAIERGNALAVQAIHDEADQTPGADMKK+KKKCKKWLNKKEGEMREEQQRLLQANQPP NPALGLRQAGPGFGVPTPPVAAAAAAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLK YADKTGHDVVITGSPQAT RRLVEDFYRSKGIEPT L P GRPGGV RARLPDPMMPTEAMIGHLGRGRTM AGPAAAAA GMRAPSGAIPQGAR VAQ XXXXXXXX VDVSGGELPQLLRAARCEHHLERF RDQLDGEVLLEMERRDFDRMGVTEAEQSRILSALKHAGEGXXXXXXXX GR E AQRVVTVVRGTSGGVATP EV DDD X DGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIRLRR
Sbjct: 588 HIVAPVPERGMSGERVASGLSEATAGPPAMTGGXXXXXXXXASLVVDMSLEVRLRKAIERGNALAVQAIHDEADQTPGADMKKMKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPVAAAAAAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKPYADKTGHDVVITGSPQATARRLVEDFYRSKGIEPTHLPPXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAVAGPAAAAAAGMRAPSGAIPQGARPVAQPVVYGGGXXXXXXXX----VDVSGGELPQLLRAARCEHHLERFLRDQLDGEVLLEMERRDFDRMGVTEAEQSRILSALKHAGEGXXXXXXXXXXXXXGRRENLAQRVVTVVRGTSGGVATPFEVEDDDVDEDXDSDGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIRLRR 1074
BLAST of mRNA_Ecto-sp13_S_contig5964.16530.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI) HSP 1 Score: 598 bits (1542), Expect = 5.990e-202 Identity = 381/454 (83.92%), Postives = 390/454 (85.90%), Query Frame = 1
Query: 328 IVAPVPERGTSEERVAAGLSGATXXXXXXXXXXXXXXXXXASLVVDMSLEVRLKKAIERGNALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGEMREEQQRLLQANQPP-NPALGLRQAGPGFGVPTPPVAAAAAAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQA--TGRRLVEDFYRSKGIEPTLLQPTSSAIAAAAAA----GRPGGVVSRARLPDPMMPTEAMIGHLGRGRTMTGAGPAAAAAGMRAPSGAIPQGARQVAQXXXXXXXXXXXXXXXXXXXVDVSGGELPQLLRAARCEHHLERFQRDQLDGEVLLEMERRDFDRMGVTEAEQSRILSALKHAGEGXXXXXXXXAAGRP------ETSAQRVVTVVRGTSGGVATPVEVGDDDXXXXXXDGLDPDHPDTCKICMDALVGI 1650
IVAPVPERGTS RVA GLS AT XXXXXXXXXASLVVDMSLEVRLKKAIERGNALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGEMREEQQRLLQANQPP NPALGLRQAGPGFGVPTPP+AA QRPT+YEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQA TGRRLVEDFYRSKGIEPTLLQP S GRPGGV RARLPDPMMPTEAMIGHLGRGRTM GAGPAAA GMRAPSGAIPQGAR VAQXXXXXX XXXXXXXXXVDVSG ELPQLLRAARCEHHLERF+RDQLDGEVLLEMERR+FDRMGVTEAEQ RI+SALKHAG+GXXXXXXXX E SAQRV VVRG SG +ATPVEV +D XXXXX DGLDPDHPDTCKICMDALVG+
Sbjct: 447 IVAPVPERGTSGARVATGLSEATAGPPAMKGXXXXXXXXXASLVVDMSLEVRLKKAIERGNALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPMAA----QRPTEYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQAVLTGRRLVEDFYRSKGIEPTLLQPPSXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAGAGPAAAV-GMRAPSGAIPQGARPVAQXXXXXXMFGGXXXXXXXXXVDVSGVELPQLLRAARCEHHLERFKRDQLDGEVLLEMERREFDRMGVTEAEQGRIMSALKHAGDGXXXXXXXXXXXXXXXXXXRENSAQRVAAVVRGASGVMATPVEV-EDXXXXXXSDGLDPDHPDTCKICMDALVGL 894
BLAST of mRNA_Ecto-sp13_S_contig5964.16530.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI) HSP 1 Score: 335 bits (860), Expect = 8.030e-100 Identity = 214/442 (48.42%), Postives = 256/442 (57.92%), Query Frame = 1
Query: 451 SLVVDMSLEVRLKKAIERGNALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGEMREEQQRLLQANQPPNPALGLRQAGPGFGVPTPPVAAAAAAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQA--TGRRLVEDFYRSKGIEPTLLQPTSSAIAAAAAAGRPGGVVSRARLPDPMMPTEAMIGHLGRGRTMTGAGPAAAAAGMRAPSGAIPQGARQVAQXXXXXXXXXXXXXXXXXXXVDVSGGELPQLLRAARCEHHLERFQRDQLDGEVLLEMERRDFDRMGVTEAEQSRILSALKHAGEGXXXXXXXXAAGRPETSAQRVVTVVRGTSGGVATPVEVGDDDXXXXXXDGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIRLR 1770
+L+ DMSLEVRLKKAI+ GN LAVQ+I+DEADQTPGA MKKIKKKC+++LNKK GE Q+L QA+QP P G AQRPTQ++MFCPN IA Q+IG+ GQTVN+LMK+SRA+IV+K Y D++G+DV+ITG+P A T +RLVE+FYRSKG +P+ L P SSA+AA A G +RAR P+ + + GA GGEL QLLR A CEHHLERF+ DQLDGEVLL M+RRDF+RMGVTE EQ RIL+ALK SGG D D GLDPDHPDTCKIC+DALV ILFLPCAHQCTC RCGS + GKPCI+CR+ V + Q VI+LR
Sbjct: 678 ALLADMSLEVRLKKAIDSGNTLAVQSIYDEADQTPGASMKKIKKKCQRYLNKKAGE----DQKLQQASQPA-PVRGAXXXXXXXXXXX--------AQRPTQHDMFCPNNIAPQLIGKQGQTVNKLMKDSRAKIVVKPYPDRSGNDVIITGTPNAVKTAKRLVEEFYRSKGCQPSALPPPSSAVAARKAEG------ARARPAQPVTGGPXXXXXXXXXXVV------------------VEDGAW---------------------------GGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTEGEQIRILNALKG-------------------------------SGGXXXXXXXXDSD-------GLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIKLR 1017
BLAST of mRNA_Ecto-sp13_S_contig5964.16530.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE) HSP 1 Score: 207 bits (527), Expect = 9.080e-58 Identity = 166/442 (37.56%), Postives = 199/442 (45.02%), Query Frame = 1
Query: 667 PALGLRQAG-------PGFGVPTPPVAAAA--AAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQAT-----------------------------------GR------------------------------RLVEDFYRSKGIEPTLLQPTSSAIAAAAAAGRPGGVVSRARLPDPMMPTEAMIGHLGRGRTMTGAGPAAAAAGMRAPSGAIPQGARQVAQXXXXXXXXXXXXXXXXXXXVDVSGGELPQLLRAARCEHHLERFQRDQLDGEVLLEMERRDFDRMGVTEAEQSRILSALKHAGEGXXXXXXXXAAGRPETSAQRVVTVVRGTSGGVATPVEVGDDDXXXXXXDGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIRLR 1770
P LGLR AG P V T V A A P+ + IA Q+IG+ GQTV++LMKESRA+IV+K Y D++G+DVVITG+P A GR R+ E+FYRSKG +PT L P SSA+AAA A +RAR P+ + + GA GGEL QLLR A CEHHLERF+ DQLDGEVLL M+RRDF+RMGVT EQ RIL+ALK +G G V+ D+D DGLDPDHPDTCKIC+DALV ILFLPCAH CTC RCGS + GKPCI+CR+ V + Q VI+LR
Sbjct: 6 PILGLRPAGKDDNTSSPDQNVFTDAVLARVGHAVLAPSPSPLLRAQNIAPQLIGKQGQTVSKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKVSKSRVLGSTLDCCRGCVRVRCLAIPLYFQAVVVGRCDGVGAGCFVVVVNALSLRHPLQCTRRVTMRVEEEFYRSKGCQPTALPPPSSAVAAARKAEG-----ARARPAQPVTGXXXXXXXXXXXXVV------------------VEDGAW---------------------------GGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTVGEQIRILNALKGSGAGG---------------------------------VDDSDEDS-----DGLDPDHPDTCKICLDALVDILFLPCAHHCTCSRCGSAYEGKPCILCRRVVDKVQRVIKLR 359
BLAST of mRNA_Ecto-sp13_S_contig5964.16530.1 vs. uniprot
Match: A0A6H5JGK6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK6_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 2.680e-13 Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1
Query: 451 SLVVDMSLEVRLKKAIERG---------NALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGE 618
+L+ MSLEVRLKKAI+ G N LAVQ+I+DEADQTPGA +KKIKKKCKKWLNKKEGE
Sbjct: 1071 ALLAHMSLEVRLKKAIDSGVSEAVGWPSNTLAVQSIYDEADQTPGASIKKIKKKCKKWLNKKEGE 1135
BLAST of mRNA_Ecto-sp13_S_contig5964.16530.1 vs. uniprot
Match: UPI00148AB525 (death-associated inhibitor of apoptosis 2-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AB525) HSP 1 Score: 52.0 bits (123), Expect = 6.670e-5 Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 1
Query: 1615 TCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKV 1740
TCKIC+DA VG++FLPC H C CV C + C ICR ++
Sbjct: 36 TCKICLDAEVGVVFLPCGHLCCCVMCAPAV--RQCPICRAEI 75 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5964.16530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5964.16530.1 >prot_Ecto-sp13_S_contig5964.16530.1 ID=prot_Ecto-sp13_S_contig5964.16530.1|Name=mRNA_Ecto-sp13_S_contig5964.16530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=578bp MQEAVAREEAAVRRKEAAAAAARSKAEAAAGEAARIAEAKAATEASRAMAback to top mRNA from alignment at Ecto-sp13_S_contig5964:2318..8552- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5964.16530.1 ID=mRNA_Ecto-sp13_S_contig5964.16530.1|Name=mRNA_Ecto-sp13_S_contig5964.16530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5964:2318..8552- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5964:2318..8552- >mRNA_Ecto-sp13_S_contig5964.16530.1 ID=mRNA_Ecto-sp13_S_contig5964.16530.1|Name=mRNA_Ecto-sp13_S_contig5964.16530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1734bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5964:2318..8552- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |