mRNA_Ecto-sp13_S_contig59638.16529.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59638.16529.1
Unique NamemRNA_Ecto-sp13_S_contig59638.16529.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 431 bits (1107), Expect = 3.120e-147
Identity = 218/236 (92.37%), Postives = 223/236 (94.49%), Query Frame = 1
Query:    1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAARPRGVEPAERRTPTFVRRADPRGHHPPYRSV 708
            NKLASAACAFDGRVTAEIATRLRARI GEVYIAPG+ADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRD LVEVVKN RGEL+GR VRQRLLFQPTAWSFLRSGDAHGWLRQLHGIH PVDEGLDYTPLPEPT RRRLLLFA+IVGNDFAKFKNVGPVTAARLAFVD  SGVWA SLLPFDAVVGDLASRLLVES+EEDTPAARPRGVEPAERRTPTFVRR D  G+HPPYR V
Sbjct:   55 NKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGKADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTGRRRLLLFAVIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGDLASRLLVESREEDTPAARPRGVEPAERRTPTFVRRPDQGGNHPPYRDV 290          
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 6.440e-132
Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 1
Query:    1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAA 615
            NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATG NVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRL+LFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAA
Sbjct:  327 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGPNVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLVLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAA 531          
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 386 bits (991), Expect = 1.550e-126
Identity = 195/206 (94.66%), Postives = 198/206 (96.12%), Query Frame = 1
Query:    1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAAR 618
            NKLASAACAFDGRVTAEIATRLRARI GEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKN RGEL+GRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIH PVDEGLDYTPLPEPTARRRLLLFA+IVGNDFAKFKNVGPVTAARLAFVD  SGVWA SLLPFDAVVG LASRLLVES+EEDTPA R
Sbjct:   82 NKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTARRRLLLFAIIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGYLASRLLVESREEDTPAVR 287          
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.850e-98
Identity = 155/172 (90.12%), Postives = 157/172 (91.28%), Query Frame = 1
Query:    1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAAS 516
            NKLASAACAFDGRVTAEIATRLRARI GEV IAPGEADPQL VFQDIHLATGANVYVYANDSD TVLGV DLLVEVVKN RGEL+GRCVRQRLLFQPT WSFLRSGD  G LRQLHGIH PVDEG DYTPLPEPTARRRLLLFA+IVG DFAKFKNVGPVTAARLAFVD  S
Sbjct:   55 NKLASAACAFDGRVTAEIATRLRARIRGEVNIAPGEADPQLAVFQDIHLATGANVYVYANDSDFTVLGVLDLLVEVVKNARGELVGRCVRQRLLFQPTTWSFLRSGDVRGRLRQLHGIHQPVDEGFDYTPLPEPTARRRLLLFAIIVGKDFAKFKNVGPVTAARLAFVDTES 226          
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 2.680e-60
Identity = 117/209 (55.98%), Postives = 145/209 (69.38%), Query Frame = 1
Query:    1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGI---HTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATS-LLPFDAVVGDLASRLLVESKEEDTPAA 615
            NK AS AC FD RV A +AT LR +I GEVYIAP EADPQ+V+FQDI+L TG  VYVYANDSDL VLGVR LL +V     G L G C+R RL+FQP  W+F    + + +LRQLHG+   HTP    L  +PL E  ARRRL LFA + GNDFA FKN+GPV AA++AF         T+ ++ F+A+VG+LA  ++ +SKEE+TPAA
Sbjct:  121 NKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIFQPPEWAFAIDAEGYAFLRQLHGLPRGHTP---NLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVSFEALVGNLARIVVQDSKEEETPAA 326          
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 2.730e-50
Identity = 117/206 (56.80%), Postives = 121/206 (58.74%), Query Frame = 1
Query:    1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAAR 618
            NKLASAACAF+GRVTAEIATR RA I GEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKN                                                       T+R                 K    +  ARLAFVD  SGVWA SL PFDAVVGDLASRLLVES+EEDTPAAR
Sbjct:   82 NKLASAACAFNGRVTAEIATRSRALIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNAT-----------------------------------------------------TSRNS---------------KMSDQLLPARLAFVDTESGVWAASLQPFDAVVGDLASRLLVESREEDTPAAR 219          
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7G6L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 7.610e-18
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 1
Query:  319 DAHGW--LRQLHGI---HTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATS-LLPFDAVVGDLASRLLVESKEEDTPAA 615
            DA G+  LRQLHG+   HTP    L  +PL E  ARRRL LFA + GNDFA FKN+GPV AA++AF         T+ ++PF+A+VG+LA  ++ +SKEE+TPAA
Sbjct:    2 DAEGYDFLRQLHGLPRRHTP---NLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVPFEALVGNLARIVVQDSKEEETPAA 103          
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.650e-17
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 1
Query:  319 DAHGW--LRQLHGI---HTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATS-LLPFDAVVGDLASRLLVESKEEDTPAA 615
            DA G+  LRQLHG+   HTP    L  +PL E  ARRRL LFA + GNDFA FKN+GPV AA++AF         T+ ++PF+A+VG+LA  ++ +SKEE+TPAA
Sbjct:    2 DAEGYDFLRQLHGLPRRHTP---NLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVPFEALVGNLARIVVQDSKEEETPAA 103          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G4G5_ECTSI3.120e-14792.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVY6_9PHAE6.440e-13299.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G0K2_ECTSI1.550e-12694.66Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
D7FZU5_ECTSI2.850e-9890.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFX7_9PHAE2.680e-6055.98Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FZG7_ECTSI2.730e-5056.80Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus ... [more]
D7G6L7_ECTSI7.610e-1852.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQM4_ECTSI1.650e-1752.38Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59638contigEcto-sp13_S_contig59638:69..841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score389.0
Seed ortholog evalue1.6e-105
Seed eggNOG ortholog2880.D7G0K2
Model size726
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.5'-3' exodeoxyribonuclease activity
EggNOG OGsCOG0258@1,KOG2518@2759
Ec32 ortholog descriptionPIN domain-like
Ec32 orthologEc-00_007660.1
Cds size726
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463828.9977355-CDS-Ecto-sp13_S_contig59638:68..1751681463828.9977355-CDS-Ecto-sp13_S_contig59638:68..175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59638 69..175 -
1681463829.0160592-CDS-Ecto-sp13_S_contig59638:222..8411681463829.0160592-CDS-Ecto-sp13_S_contig59638:222..841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59638 223..841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59638.16529.1prot_Ecto-sp13_S_contig59638.16529.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59638 69..841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59638.16529.1

>prot_Ecto-sp13_S_contig59638.16529.1 ID=prot_Ecto-sp13_S_contig59638.16529.1|Name=mRNA_Ecto-sp13_S_contig59638.16529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLA
TGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAW
SFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGND
FAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEE
DTPAARPRGVEPAERRTPTFVRRADPRGHHPPYRSVFRGCV*
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mRNA from alignment at Ecto-sp13_S_contig59638:69..841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59638.16529.1 ID=mRNA_Ecto-sp13_S_contig59638.16529.1|Name=mRNA_Ecto-sp13_S_contig59638.16529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=773bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59638:69..841- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGTTGGCCAGCGCCGCCTGTGCTTTCGACGGTCGAGTTACCGCTGA GATCGCGACGCGCTTGAGAGCCCGTATCGGGGGGGAGGTTTATATCGCCC CAGGCGAAGCGGATCCACAGCTTGTAGTCTTCCAGGACATCCATCTCGCA ACAGGGGCGAACGTGTACGTGTATGCCAATGACTCCGACTTAACAGTTCT TGGGGTACGGGATCTGTTGGTGGAAGTGGTCAAGAACACGAGAGGAGAGC TCATCGGAAGATGCGTCCGGCAGAGGCTGCTCTTCCAACCCACCGCATGG TCCTTCCTCCGGAGTGGGGATGCTCATGGGTGGCTGCGCCAGCTGCACGG AATACACACGCCAGTTGACGAGGGCTTAGACTACACGCCTCTACCGGAAC CGACCGCCCGCCGCCGCCTTCTCTTGTTCGCCATGATCGTAGGCAACGAC TTCGCGAAATTCAAAAATGTCGGACCAGTTACTGCGGCAAGACTAGCTTT CGTTGACGCCGCAAGCGGTGTCTGGGCGACATCTCTCCTACCATTCGATG CGGTTGTTGGAGACCTGGCCTCAAGACTGCTGGTGGAGTCCAAGGAGGAG GACACGCCTGCTGCGCGGCGTGAGGTTGAGATCCGACTGCGCGCCTGCCA CACCATGTTTACGCAGCCCGTGGTGTGGAACCCGCTGAGCGGCGAACTCC AACATTTGTCCGGCGCGCCGACCCGCGAGGACATCACCCGCCATACAGGT CAGTGTTCCGCGGGTGTGTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59638:69..841-

>mRNA_Ecto-sp13_S_contig59638.16529.1 ID=mRNA_Ecto-sp13_S_contig59638.16529.1|Name=mRNA_Ecto-sp13_S_contig59638.16529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59638:69..841- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGTTGGCCAGCGCCGCCTGTGCTTTCGACGGTCGAGTTACCGCTGA
GATCGCGACGCGCTTGAGAGCCCGTATCGGGGGGGAGGTTTATATCGCCC
CAGGCGAAGCGGATCCACAGCTTGTAGTCTTCCAGGACATCCATCTCGCA
ACAGGGGCGAACGTGTACGTGTATGCCAATGACTCCGACTTAACAGTTCT
TGGGGTACGGGATCTGTTGGTGGAAGTGGTCAAGAACACGAGAGGAGAGC
TCATCGGAAGATGCGTCCGGCAGAGGCTGCTCTTCCAACCCACCGCATGG
TCCTTCCTCCGGAGTGGGGATGCTCATGGGTGGCTGCGCCAGCTGCACGG
AATACACACGCCAGTTGACGAGGGCTTAGACTACACGCCTCTACCGGAAC
CGACCGCCCGCCGCCGCCTTCTCTTGTTCGCCATGATCGTAGGCAACGAC
TTCGCGAAATTCAAAAATGTCGGACCAGTTACTGCGGCAAGACTAGCTTT
CGTTGACGCCGCAAGCGGTGTCTGGGCGACATCTCTCCTACCATTCGATG
CGGTTGTTGGAGACCTGGCCTCAAGACTGCTGGTGGAGTCCAAGGAGGAG
GACACGCCTGCTGCGCGGCCCCGTGGTGTGGAACCCGCTGAGCGGCGAAC
TCCAACATTTGTCCGGCGCGCCGACCCGCGAGGACATCACCCGCCATACA
GGTCAGTGTTCCGCGGGTGTGTGTAA
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