mRNA_Ecto-sp13_S_contig59637.16528.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: D7G7K1_ECTSI (Rit1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K1_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.660e-41 Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1
Query: 1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
RNGLWYGK+WDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV
Sbjct: 34 RNGLWYGKDWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 100
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A6H5KM30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM30_9PHAE) HSP 1 Score: 120 bits (300), Expect = 1.300e-29 Identity = 61/68 (89.71%), Postives = 62/68 (91.18%), Query Frame = 1
Query: 73 RWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATVRTRHDSSCANVCCILRSSTAQHVLR 276
RWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFT TVRT HD ANVC ILRS+TAQHVLR
Sbjct: 3 RWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTTTVRTHHDFGFANVCFILRSATAQHVLR 70
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A835YSK0_9STRA (Initiator tRNA phosphoribosyl transferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSK0_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.850e-27 Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 1 RNGLWYG--KEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
RNG WYG W+GTCYFKS DGH +WAFSYTRLN+H+A AA AGGC+VVDSTR GKRFPD+ TATV
Sbjct: 91 RNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATV 159
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A7S3UNI5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNI5_HETAK) HSP 1 Score: 97.8 bits (242), Expect = 7.840e-24 Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 1 RNGLWYG--KEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
RNG+WY +EWDG CYFKS DGH RW FS RLN+H+A AAA AGG +VVDSTR GK PDS TATV
Sbjct: 48 RNGVWYAPEEEWDGLCYFKSADGHEGRWTFSQGRLNLHVARAAAEAGGVVVVDSTRRGKDCPDSLTATV 116
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A7R9VGJ9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VGJ9_9CHLO) HSP 1 Score: 94.4 bits (233), Expect = 9.620e-23 Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1
Query: 1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATVRTRHDSSCANVCCILRSSTAQH 267
R GLWY DGTCYFKSTDGH+ W+FS TRLN H+A AA +GG I+VD+TR GKR+ D+FT TV CC++ + A+H
Sbjct: 29 RCGLWYTALDDGTCYFKSTDGHTNNWSFSTTRLNWHVATTAAESGGAIIVDATRRGKRYSDAFTKTVPIW--------CCVVNRAVARH 109
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: U5D482_AMBTC (Uncharacterized protein n=5 Tax=Amborella trichopoda TaxID=13333 RepID=U5D482_AMBTC) HSP 1 Score: 99.4 bits (246), Expect = 2.440e-22 Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
R GLWY + +D TCYFKSTDGH+ W+FS +RLN+HLA AA GGCI+VDSTR GKRFPDS + T+
Sbjct: 83 RCGLWYSQRFDATCYFKSTDGHTGNWSFSTSRLNLHLAELAAQRGGCIIVDSTRRGKRFPDSMSKTI 149
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: D8RSU0_SELML (Uncharacterized protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RSU0_SELML) HSP 1 Score: 99.0 bits (245), Expect = 2.790e-22 Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1
Query: 1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
R GLWY +++D TCYFKSTDGH+ W F+ RLNIH+AA AA +GGC++VDSTR GKRFPDS + T+
Sbjct: 61 RCGLWYARKFDDTCYFKSTDGHTGNWGFNPARLNIHIAAIAARSGGCMIVDSTRKGKRFPDSMSKTI 127
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A8HVT9_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HVT9_CHLRE) HSP 1 Score: 97.1 bits (240), Expect = 3.010e-22 Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
R GLWY ++ DGTCYFKSTDGH+ W+FS TRLN+H+A AA GG I+VD+TR GKRFPD+ T T+
Sbjct: 50 RCGLWYARQPDGTCYFKSTDGHNGNWSFSCTRLNLHVAEVAARQGGVIIVDATRKGKRFPDAMTKTI 116
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A388K2T9_CHABU (Ig-like domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K2T9_CHABU) HSP 1 Score: 98.2 bits (243), Expect = 6.740e-22 Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
R GLWY + +DGTCYFKSTDGH W+ S TRLN+H+A AAA GGC++VD+TR GKRFPDS + ++
Sbjct: 105 RCGLWYSRRFDGTCYFKSTDGHMGNWSLSLTRLNMHVAMAAAIRGGCVIVDATRRGKRFPDSLSKSI 171
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A835V6N6_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V6N6_VANPL) HSP 1 Score: 97.8 bits (242), Expect = 8.320e-22 Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
R GLWY ++ TCYFKSTDGH+ W+FS TRLN+HLA A GGCIVVDSTR GKRFPDS + T+
Sbjct: 61 RCGLWYSPRFEATCYFKSTDGHANNWSFSTTRLNLHLAFLAGQRGGCIVVDSTRKGKRFPDSMSKTI 127 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig59637.16528.1 >prot_Ecto-sp13_S_contig59637.16528.1 ID=prot_Ecto-sp13_S_contig59637.16528.1|Name=mRNA_Ecto-sp13_S_contig59637.16528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVback to top mRNA from alignment at Ecto-sp13_S_contig59637:1..487+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig59637.16528.1 ID=mRNA_Ecto-sp13_S_contig59637.16528.1|Name=mRNA_Ecto-sp13_S_contig59637.16528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=487bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59637:1..487+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59637:1..487+ >mRNA_Ecto-sp13_S_contig59637.16528.1 ID=mRNA_Ecto-sp13_S_contig59637.16528.1|Name=mRNA_Ecto-sp13_S_contig59637.16528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59637:1..487+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |