mRNA_Ecto-sp13_S_contig59633.16527.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59633.16527.1
Unique NamemRNA_Ecto-sp13_S_contig59633.16527.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Match: D7G588_ECTSI (Histidyl-tRNA Synthetase Similar to Histidine Ammonia-Lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G588_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.320e-22
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 VAALTCEATRANTAPFDAINFDVRPHRGQIACADRLRLMLEGSKSANPTK 150
            VAALTCEATRANTAPFDA+NFDVRPHRGQIACADRLRLML+GSKSAN TK
Sbjct:  196 VAALTCEATRANTAPFDALNFDVRPHRGQIACADRLRLMLDGSKSANSTK 245
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BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Match: W7TTH8_9STRA (Histidine ammonia-lyase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTH8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.780e-7
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    4 AALTCEATRANTAPFDAINFDV-RPHRGQIACADRLRLMLEGSKSANPTKASK 159
            AA+ CE T A+  PF A++FD+ RPHRGQ+A A  LRL+LEGS    P   +K
Sbjct:  204 AAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAMVRPAVGAK 256
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BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Match: A0A4D9D9L7_9STRA (tRNA-synt_His domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9L7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.700e-7
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 AALTCEATRANTAPFDAINFDV-RPHRGQIACADRLRLMLEGSKSANP 144
            AA+ CE T A+  PF A++FD+ RPHRGQ+A A  LRL+LEGS    P
Sbjct:  192 AAVACEVTHASLEPFQAVHFDMHRPHRGQMATAMNLRLLLEGSAVVRP 239
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BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Match: A0A1W0A0Z3_9STRA (Histidine--tRNA ligase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0Z3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.740e-7
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 VAALTCEATRANTAPFDAINFDV-RPHRGQIACADRLRLMLEGSKSAN 141
            VAALTCE T+A TAPF+    D  RPHRG I  A  LR ML+GSK+ N
Sbjct:  189 VAALTCEVTKAQTAPFNVEFHDATRPHRGIITSATNLRAMLDGSKATN 236
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BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Match: A0A349P4U4_9FLAO (Histidine ammonia-lyase n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A349P4U4_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 9.480e-7
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 VAALTCEATRANTAPFDAINFDVRPHRGQIACADRLRLMLEGSKSANPTKAS 156
            ++AL+ +A   N +PFD +   VRPHRGQI  ADR+R +LEGS+ A   KAS
Sbjct:  224 ISALSMDAFNCNLSPFDELVHFVRPHRGQIKTADRIREILEGSEIAEDEKAS 275
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BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Match: A0A840EQX0_9FLAO (Histidine ammonia-lyase n=1 Tax=Mesonia hippocampi TaxID=1628250 RepID=A0A840EQX0_9FLAO)

HSP 1 Score: 50.4 bits (119), Expect = 8.500e-6
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 VAALTCEATRANTAPFDAINFDVRPHRGQIACADRLRLMLEGSKSANPTK 150
            ++ ++ EA   N++PF A+  D+RPHRGQI  A+R+R  LEGS+  N  K
Sbjct:  224 ISTISLEAYDGNSSPFTALVHDIRPHRGQIQTAERVRSFLEGSQLINQPK 273
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BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Match: A0A6G0XS38_9STRA (Histidine--tRNA ligase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XS38_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.620e-5
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 VAALTCEATRANTAPFDAINFDVRPHRGQIACADRLRLMLEGSKSA 138
            VAALTCEA +A++ PF   +   RPHRG I  A  LR+ML+ SK A
Sbjct:  192 VAALTCEALKASSFPFQEAHDVDRPHRGMITVAANLRVMLDNSKFA 237
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BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Match: A0A1L3J3D2_9FLAO (Histidine ammonia-lyase n=1 Tax=Gramella salexigens TaxID=1913577 RepID=A0A1L3J3D2_9FLAO)

HSP 1 Score: 47.8 bits (112), Expect = 7.640e-5
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 VAALTCEATRANTAPFDAINFDVRPHRGQIACADRLRLMLEGSKSANPTKAS 156
            + A++ +A   N +PFD +   VRPHRGQ+  A+R+R  LEGS+ A   K S
Sbjct:  224 IGAISIDAFDCNLSPFDELVHIVRPHRGQVKTAERIRTFLEGSEIAQTEKES 275
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BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Match: UPI0016726961 (histidine ammonia-lyase n=1 Tax=Salinimicrobium marinum TaxID=680283 RepID=UPI0016726961)

HSP 1 Score: 47.8 bits (112), Expect = 7.640e-5
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    1 VAALTCEATRANTAPFDAINFDVRPHRGQIACADRLRLMLEGSKSANPTK 150
            + AL+ +A   NT PFD +   VRPHRGQI  A R+R  LEGS+ A   K
Sbjct:  224 IGALSIDAFDCNTDPFDELVHMVRPHRGQIKTAGRIRQFLEGSEIAKQHK 273
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BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Match: H2BYK3_GILLR (Histidine ammonia-lyase n=1 Tax=Gillisia limnaea (strain DSM 15749 / LMG 21470 / R-8282) TaxID=865937 RepID=H2BYK3_GILLR)

HSP 1 Score: 47.8 bits (112), Expect = 7.640e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 VAALTCEATRANTAPFDAINFDVRPHRGQIACADRLRLMLEGSKSANPTKAS 156
            ++A++ +A   N +PFD +   VRPHRGQI  A+RLR +L GS+ A   KAS
Sbjct:  224 ISAISIDAFDCNMSPFDELVHMVRPHRGQIKTAERLREILTGSELAAQEKAS 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59633.16527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G588_ECTSI1.320e-2294.00Histidyl-tRNA Synthetase Similar to Histidine Ammo... [more]
W7TTH8_9STRA1.780e-752.83Histidine ammonia-lyase n=2 Tax=Nannochloropsis ga... [more]
A0A4D9D9L7_9STRA2.700e-756.25tRNA-synt_His domain-containing protein n=1 Tax=Na... [more]
A0A1W0A0Z3_9STRA3.740e-760.42Histidine--tRNA ligase (Fragment) n=1 Tax=Thrausto... [more]
A0A349P4U4_9FLAO9.480e-751.92Histidine ammonia-lyase n=3 Tax=Flavobacteriaceae ... [more]
A0A840EQX0_9FLAO8.500e-646.00Histidine ammonia-lyase n=1 Tax=Mesonia hippocampi... [more]
A0A6G0XS38_9STRA5.620e-554.35Histidine--tRNA ligase n=1 Tax=Aphanomyces euteich... [more]
A0A1L3J3D2_9FLAO7.640e-544.23Histidine ammonia-lyase n=1 Tax=Gramella salexigen... [more]
UPI00167269617.640e-550.00histidine ammonia-lyase n=1 Tax=Salinimicrobium ma... [more]
H2BYK3_GILLR7.640e-548.08Histidine ammonia-lyase n=1 Tax=Gillisia limnaea (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59633contigEcto-sp13_S_contig59633:605..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score98.2
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D7G588
Preferred nameHARS
Model size159
KEGG rclassRC00055,RC00523
KEGG koko:K01892,ko:K06675
KEGG ReactionR03655
KEGG Pathwayko00970,ko04111,map00970,map04111
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000122,GO:0000166,GO:0002119,GO:0002164,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004821,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048468,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons1
EggNOG free text desc.Histidyl-trna synthetase
EggNOG OGsCOG0124@1,COG2986@1,KOG0222@2759,KOG1936@2759
Ec32 ortholog descriptionHistidyl-tRNA Synthetase Similar to Histidine Ammonia-Lyase
Ec32 orthologEc-14_006630.1
EC6.1.1.21
Cds size159
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463828.898069-CDS-Ecto-sp13_S_contig59633:604..7631681463828.898069-CDS-Ecto-sp13_S_contig59633:604..763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59633 605..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59633.16527.1prot_Ecto-sp13_S_contig59633.16527.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59633 605..763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59633.16527.1

>prot_Ecto-sp13_S_contig59633.16527.1 ID=prot_Ecto-sp13_S_contig59633.16527.1|Name=mRNA_Ecto-sp13_S_contig59633.16527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
VAALTCEATRANTAPFDAINFDVRPHRGQIACADRLRLMLEGSKSANPTK
ASK
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mRNA from alignment at Ecto-sp13_S_contig59633:605..763-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59633.16527.1 ID=mRNA_Ecto-sp13_S_contig59633.16527.1|Name=mRNA_Ecto-sp13_S_contig59633.16527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59633:605..763- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCGGCCCTCACCTGCGAGGCAACCCGTGCCAACACCGCCCCCTTCGA
CGCCATTAACTTCGATGTCCGGCCTCACCGGGGTCAGATCGCTTGCGCCG
ATAGGCTGCGGCTCATGCTCGAGGGCTCCAAGTCCGCCAACCCTACAAAG
GCGAGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59633:605..763-

>mRNA_Ecto-sp13_S_contig59633.16527.1 ID=mRNA_Ecto-sp13_S_contig59633.16527.1|Name=mRNA_Ecto-sp13_S_contig59633.16527.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59633:605..763- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCGGCCCTCACCTGCGAGGCAACCCGTGCCAACACCGCCCCCTTCGA
CGCCATTAACTTCGATGTCCGGCCTCACCGGGGTCAGATCGCTTGCGCCG
ATAGGCTGCGGCTCATGCTCGAGGGCTCCAAGTCCGCCAACCCTACAAAG
GCGAGCAAG
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