mRNA_Ecto-sp13_S_contig5963.16526.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5963.16526.1
Unique NamemRNA_Ecto-sp13_S_contig5963.16526.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5963.16526.1 vs. uniprot
Match: D7FXU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU3_ECTSI)

HSP 1 Score: 499 bits (1286), Expect = 1.370e-165
Identity = 246/271 (90.77%), Postives = 251/271 (92.62%), Query Frame = 1 
Query:    1 VALLLEIVTHFVVWKGKLWFRCSLFAGGKGEENPPRGGGSEASAPGYPSGGSHRGLLEHAKNTGGGKXXXXXAPNHGVGNGRQKLLSPHTQEGTMYPSGNYNYNDNEYY-EEGEDTECSRCSIWACFGWNGEDQGKRFFSVPPSARVGWWRTVDLVLVLVVAGESIVSMATYLAEGDYRVVHALQGLVILRWFPLMFCPFPPAEGHDDLHDVGGATVHHDPLSHNAREETLKETLALLRGQTKLTAVFDGNNTGHADGGNLTAGDDADNLQ 810
            VALLLEIVTHFVVWKGKLWFRCSLFA GKGEE P  GGGSEASAPGYPSGGSHRGLL HA +TGG K     APNHGVG+G QKLLSPHTQEGTMYPSGNYNYNDNEY  EE EDT CSRCS+WACFGWNGEDQGKRFFSVPPSA+VGWWRTVDLVLVLVVAGESIVSMATYLAEGDYRVVHALQGLVILRWFPLMFCPFPPAEGHDDLHDVGGATVHHDPLSHNAREETLKETLALLRGQTKLTAVFDGNN GHADGGNLTAGDD D L+
Sbjct:  518 VALLLEIVTHFVVWKGKLWFRCSLFAVGKGEETPSPGGGSEASAPGYPSGGSHRGLLGHANDTGGVKAEMPGAPNHGVGDGGQKLLSPHTQEGTMYPSGNYNYNDNEYXXEEEEDTACSRCSVWACFGWNGEDQGKRFFSVPPSAKVGWWRTVDLVLVLVVAGESIVSMATYLAEGDYRVVHALQGLVILRWFPLMFCPFPPAEGHDDLHDVGGATVHHDPLSHNAREETLKETLALLRGQTKLTAVFDGNNMGHADGGNLTAGDDTDKLE 788
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BLAST of mRNA_Ecto-sp13_S_contig5963.16526.1 vs. uniprot
Match: A0A6H5KBW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW2_9PHAE)

HSP 1 Score: 490 bits (1261), Expect = 5.380e-162
Identity = 241/270 (89.26%), Postives = 246/270 (91.11%), Query Frame = 1 
Query:    1 VALLLEIVTHFVVWKGKLWFRCSLFAGGKGEENPPRGGGSEASAPGYPSGGSHRGLLEHAKNTGGGKXXXXXAPNHGVGNGRQKLLSPHTQEGTMYPSGNYNYNDNEYYEEG-EDTECSRCSIWACFGWNGEDQGKRFFSVPPSARVGWWRTVDLVLVLVVAGESIVSMATYLAEGDYRVVHALQGLVILRWFPLMFCPFPPAEGHDDLHDVGGATVHHDPLSHNAREETLKETLALLRGQTKLTAVFDGNNTGHADGGNLTAGDDADNL 807
            VA LLEIVTHFVVWKGKLWFRCSLFA GKGEE+PP GG SEASAPGYPSGGSHRGLLEHA N+GGG      APNHGVG+G QKLLSPHTQEGTMYPSGNYNYNDNEY     EDTECSRCSIWACFGWNGEDQGKRFFSVPPSAR GWWRTVDL+LVLVVAGESIVSMATYLAEGDYRVVHALQGLVILRWFPLMFCPFPPAEGHDDLHDVGGATVHHDPLSHNAREETLKETLALLRGQTKLTAV +GNN GHADGGN  AGDD D L
Sbjct:  508 VAFLLEIVTHFVVWKGKLWFRCSLFAAGKGEEHPPPGGVSEASAPGYPSGGSHRGLLEHASNSGGGTAEMPGAPNHGVGDGAQKLLSPHTQEGTMYPSGNYNYNDNEYXXXXXEDTECSRCSIWACFGWNGEDQGKRFFSVPPSARRGWWRTVDLMLVLVVAGESIVSMATYLAEGDYRVVHALQGLVILRWFPLMFCPFPPAEGHDDLHDVGGATVHHDPLSHNAREETLKETLALLRGQTKLTAVLNGNNMGHADGGNPAAGDDTDKL 777
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5963.16526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXU3_ECTSI1.370e-16590.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBW2_9PHAE5.380e-16289.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5963contigEcto-sp13_S_contig5963:4134..8081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score507.3
Seed ortholog evalue4.8e-141
Seed eggNOG ortholog2880.D7FXU3
Model size889
KEGG koko:K08472
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Mlo family
EggNOG OGs2CZNV@1,2SB25@2759
Ec32 ortholog descriptionMlo-related protein
Ec32 orthologEc-20_003310.1
Cds size885
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04030
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5963.16526.1prot_Ecto-sp13_S_contig5963.16526.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5963 4136..8081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463828.794394-CDS-Ecto-sp13_S_contig5963:4135..42131681463828.794394-CDS-Ecto-sp13_S_contig5963:4135..4213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5963 4136..4213 -
1681463828.8146224-CDS-Ecto-sp13_S_contig5963:5051..51031681463828.8146224-CDS-Ecto-sp13_S_contig5963:5051..5103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5963 5052..5103 -
1681463828.832109-CDS-Ecto-sp13_S_contig5963:5927..61301681463828.832109-CDS-Ecto-sp13_S_contig5963:5927..6130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5963 5928..6130 -
1681463828.8419704-CDS-Ecto-sp13_S_contig5963:6838..69731681463828.8419704-CDS-Ecto-sp13_S_contig5963:6838..6973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5963 6839..6973 -
1681463828.8523672-CDS-Ecto-sp13_S_contig5963:7357..75571681463828.8523672-CDS-Ecto-sp13_S_contig5963:7357..7557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5963 7358..7557 -
1681463828.8640742-CDS-Ecto-sp13_S_contig5963:7864..80811681463828.8640742-CDS-Ecto-sp13_S_contig5963:7864..8081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5963 7865..8081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5963.16526.1

>prot_Ecto-sp13_S_contig5963.16526.1 ID=prot_Ecto-sp13_S_contig5963.16526.1|Name=mRNA_Ecto-sp13_S_contig5963.16526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
VALLLEIVTHFVVWKGKLWFRCSLFAGGKGEENPPRGGGSEASAPGYPSG
GSHRGLLEHAKNTGGGKAEMPGAPNHGVGNGRQKLLSPHTQEGTMYPSGN
YNYNDNEYYEEGEDTECSRCSIWACFGWNGEDQGKRFFSVPPSARVGWWR
TVDLVLVLVVAGESIVSMATYLAEGDYRVVHALQGLVILRWFPLMFCPFP
PAEGHDDLHDVGGATVHHDPLSHNAREETLKETLALLRGQTKLTAVFDGN
NTGHADGGNLTAGDDADNLQQQQQGSAAMMRTTAASAEEEKGGGG
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mRNA from alignment at Ecto-sp13_S_contig5963:4134..8081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5963.16526.1 ID=mRNA_Ecto-sp13_S_contig5963.16526.1|Name=mRNA_Ecto-sp13_S_contig5963.16526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5963:4134..8081- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCCCTCTTACTGGAGATCGTGACGCACTTCGTCGTGTGGAAGGGCAA
GCTGTGGTTCCGCTGCAGCCTCTTCGCGGGGGGGAAGGGCGAGGAAAATC
CCCCCCGGGGGGGCGGATCCGAGGCCTCTGCCCCGGGGTACCCTTCGGGC
GGAAGCCACCGCGGGCTCCTCGAGCACGCCAAGAACACCGGCGGCGGGAA
GGCGGAGATGCCCGGAGGTACGCCTTTGGGCCGGGGCTCGATTCGGGCTA
GGGTGTCTGAGTATGAAGCCATGTGATGAATACACAGTCATGATCTTACC
GTGGATCGGGTAGAGAGTATAGAAATACTTGGGACGCTTGGTTGTTTCCG
AAATCTGCTTGCACCCCCCCCCCCCCGGCACCAGCGACCCGTGCGAAAAC
CCAACTACATTCTGATCTCACGCATTGCCCCCCGACCTATTGGAGACCGA
AATCTCCCCGCCTTTCACCGCAACTTACATGATGCCGAACCTTTTCTTGC
TTGTTTTTTCCCTCCTGTTTTCAGCGCCGAATCACGGCGTCGGCAACGGC
AGGCAGAAGCTTCTTTCTCCGCACACACAAGAGGGCACCATGTACCCTAG
CGGGAACTACAACTACAATGACAACGAGTACTACGAGGAGGGGGAGGACA
CGGAGTGCTCGCGCTGCTCCATTTGGGCGTGCTTCGGCTGGAACGGAGAA
GACCAGGGCAAGCGTTTCTTCTCGGTACGGACCCACCGCTGCTGCGGTTG
TGCGTTCTACCATTTTGTTGCTGTGTTTGTTTTTTGTACTTGTTGCACAG
GTTGTTGTCTGTGTGATCTTGGGGGACTTGCCAACTCGAAGTAAGAGAAA
CGGCCAACAAGACAGCAACACGCAGCACGTGTGTAGAGCCTCCGTCCTTG
TGTCTCGGCGGTAGGCAGGGTTTTTTTTTTGTGATGTGAGCGGTGATTAT
TGTTGTGCTCGTCATTCCGGTCGAAAGAGCTATGGTGATACTGCCCGGCT
CAACAAGCAAGCCTGTCTGCATTCCCTCCCCACACTGACCTCTTCCTCGC
CCCCACCGACTATGTCGTCGTTTTTCGCTGCTTGTTTACCGGTCTCGAAC
CGCACAAGGTGCCACCGTCGGCTAGAGTAGGGTGGTGGAGGACGGTGGAC
TTGGTGCTGGTGCTGGTCGTTGCCGGCGAGTCGATCGTGTCCATGGCCAC
CTACCTGGCCGAGGGAGACTATCGGGTAGTCCACGCTTTGCAGGTCGGAG
GAGGAGGAGGAGGCGCTTGTTCTTCTATCTCGTCTCTTTTTTTCTGTGTG
TGTGTCCTGGGGCTGGAACGAGTCGTTTGTTCTCTCTCTCTGTCTATCTC
TCTCTTTGTGTGTGTACCCTGCGGATGGGAGGAAGCGTTTATTATTGTTA
TATCTATATATTTCCTCTCTTCCCTTTCTCTTTGCGTGGCTGTTTGCTTT
GATTTGCTCATGCCGGCGGCCCGAGAGTCTCCGTTCTCACGTGCATACGC
TTTGACGTGCGCTAAGTTTGTATGGTCCACGTGTTTCAACGTACTTCGTA
CGTGTTTCGTGGAATGTGCGGGTGAGGCATCGTCTCCACGTGCGGGATAA
GGTTTATATCGACCGCCGTTGCTGCTCTATCGGAAAACTGCTGGTCCGGC
TGCTTGCTTTACGTGCGTCGGGACACCGTCTGCGTCTGCGTGTATGTGCT
TCGCTTGGGATGTCTCCAGTTCGTGTGAAGGTCGTGAAACGGTCGTGTGC
TGCTCGTGCGTTTGTTTTGTGCGCGCGTCTGGACGCCATCTGCTGCGTTT
GTGTTTGTGCCCTGATTCGCCTTTACTTGGGTTCTTTCGTCTGAAGGCCG
CGGAGCAGCCGTGTGGCTTGGTCTCGTATTTTCAGCTTCCTCTGCCGCTG
CGTCCGCGCTCGCTTGTGGGTTGCTGCCGTCCGTCCGCCCGACGGCAACA
GGGCCTCGTTATCCTTAGGTGGTTCCCGCTCATGTTCTGCCCCTTCCCTC
CCGCGGAGGGCCACGACGACCTCCACGACGTCGGCGGGGCCACCGTGCAC
CACGACCCGCTCAGCCACAACGCCCGCGAGGAGACCCTCAAGGAAACCCT
GGCCCTGCTGCGGGGCCAAACCAAGCTCACCGCGGTCTTCGACGGCAACA
ACACGTGAGTGTGTGTCTTCCGAGTGTTACTCTTGGTAGGTTTTCGTGTC
CTTGACGGGATAGCTCTGACGAGTAGAGAACGGGAGAACATGACCTTTTC
ACGACACTTCGGTGTTTAGACACCGCGGGCGGGCTGGCGGGTACATGCAA
CCGCACGAACTTCGGTGTGTGACCAGTTTTGACTGGCCCTCGGTGCTTGA
CGTTGCTTTGGATCGCGCATTTGTCTCGCGTTGAAGAGCCGAATGTTGGT
GTGTGTGGTTGCAAGTAGCATGTATTTTTTTTTGTCTCTTGTTTTGATAC
ATGTGCTCCACTACTGTTCTGCTCGCGTACGCTCGCGCGTTGGCGGGAAT
CACCGGTGTTTCTCTGCTTGTCCTGTCTCATACGGGGATTTCAGAGCTCG
GCGATCGCCTCTTTCCCTTGGTTCTCTCTCTCTCTTTCTCTCTCCGTCCC
TCCCTTTTTCTCTAATGTATACGGTACTCGTAGTACTCATGGTACGTTTG
AGCACACCGTGGTTGAGAAGGAGGCGCCAACCGTTAAACAGTGTTCATCT
TTCTTTGTTCGATAAGACTGTAGGCACTCGATGCGTTGGCCAATCGGTGC
CTACCAAAGACGGAGCACGCGGCGTGGCCTTCCCTGGCCGTCCACTCAGC
AGTCACCCAGTCACTACGCCCGTCGCCATTACTCCTACCCCGGTGTACGG
GACAAGGCTCAAGGACAAGGACACGATTCCCACCTGATGTGTGTGTTGTG
TGCGCGTTGTGCTCAAGGACACCTTCCCGCCTTTTGTGTATTACGTGTTC
CGCGCTCTGGGGCGTTTATCTTTTGCAGGGGCCACGCAGACGGAGGGAAC
CTCACCGCGGGCGATGATGCCGACAACCTCGTGAGTCTGTTCTGGTGGCG
TCCTTCGGGTCTCCCACCCATTGTTTCTCGTTCCGTGGTACTCACGGTAA
ACGTGTTTCGGCTGGGCTGGGATGCAGAACGTGCTCCGTTTACCTGAAAG
AGATATCGAAGCCTTGCGTCTGTCAAGTTCTACTCGGATAGCCACTATCT
TGTTGTTGAGGCTTGTTGGATTTGGTCAATACCTCAGCTGCACCACCAAT
GGTGCGTACTGGTTGTTCTTGTTTTCTCAGTGTGCTGGCCGACATATATA
GTCTCTCCATTCTGTTTTCCTACGGTGGATCCCACGGAATCTCAGCTGAC
ACTATCCCAACACCATGACGCCCACATACGTCGTACGCGACATACAACAG
TAGACCGAGATCAGTTGGTCAGCTAGCTTGTACGAACAAGGACAGTTTGT
GTCTCGGCGATCGGTCTGTTCCAACCCGTCCGAACACCCGCACGCAACGC
CGTTGTGGCGAAGCGGTGTGGAGTTGTATGCTCCCTAGAGAAAGGTACGT
ATGTCTGCATGTCCAAAAAAGAACAAGCCTCCCCTCATCCTCGTTGATGG
GTGATGCAACCGTTCTTCGCGCATCAATTTTTTCCCGTAGGTTGGCAAGA
TGTTGGCAGGTCCGGGATAAATTAAGAATGAAACAAGCACACGCATGTTT
TTTTTTTTTTGCCGGGGACAGGGACAACCATCCAACCTTTAAAGCTTGCG
AAGACAAAATACACCCTTCGCCGCATGCGTGAGTATACCTCACCCAGCCG
TTTTCCATTTTTCCATGGGGGCTACCGCTTGCGTCGCGTCTCTCTCTCGC
CGCAATATCCGGCAGCAGCAGCAGCAGCAGCAGGGGTCCGCCGCCATGAT
GAGGACAACCGCTGCCTCCGCGGAGGAAGAGAAGGGCGGCGGCGGCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5963:4134..8081-

>mRNA_Ecto-sp13_S_contig5963.16526.1 ID=mRNA_Ecto-sp13_S_contig5963.16526.1|Name=mRNA_Ecto-sp13_S_contig5963.16526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5963:4134..8081- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCCCTCTTACTGGAGATCGTGACGCACTTCGTCGTGTGGAAGGGCAA
GCTGTGGTTCCGCTGCAGCCTCTTCGCGGGGGGGAAGGGCGAGGAAAATC
CCCCCCGGGGGGGCGGATCCGAGGCCTCTGCCCCGGGGTACCCTTCGGGC
GGAAGCCACCGCGGGCTCCTCGAGCACGCCAAGAACACCGGCGGCGGGAA
GGCGGAGATGCCCGGAGCGCCGAATCACGGCGTCGGCAACGGCAGGCAGA
AGCTTCTTTCTCCGCACACACAAGAGGGCACCATGTACCCTAGCGGGAAC
TACAACTACAATGACAACGAGTACTACGAGGAGGGGGAGGACACGGAGTG
CTCGCGCTGCTCCATTTGGGCGTGCTTCGGCTGGAACGGAGAAGACCAGG
GCAAGCGTTTCTTCTCGGTGCCACCGTCGGCTAGAGTAGGGTGGTGGAGG
ACGGTGGACTTGGTGCTGGTGCTGGTCGTTGCCGGCGAGTCGATCGTGTC
CATGGCCACCTACCTGGCCGAGGGAGACTATCGGGTAGTCCACGCTTTGC
AGGGCCTCGTTATCCTTAGGTGGTTCCCGCTCATGTTCTGCCCCTTCCCT
CCCGCGGAGGGCCACGACGACCTCCACGACGTCGGCGGGGCCACCGTGCA
CCACGACCCGCTCAGCCACAACGCCCGCGAGGAGACCCTCAAGGAAACCC
TGGCCCTGCTGCGGGGCCAAACCAAGCTCACCGCGGTCTTCGACGGCAAC
AACACGGGCCACGCAGACGGAGGGAACCTCACCGCGGGCGATGATGCCGA
CAACCTCCAGCAGCAGCAGCAGGGGTCCGCCGCCATGATGAGGACAACCG
CTGCCTCCGCGGAGGAAGAGAAGGGCGGCGGCGGC
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