mRNA_Ecto-sp13_S_contig5963.16525.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5963.16525.1
Unique NamemRNA_Ecto-sp13_S_contig5963.16525.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5963.16525.1 vs. uniprot
Match: A0A6H5KBW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 6.830e-22
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = -2 
Query:  293 TAASAENETSGRVAVGPQVAQAATLVVPDPGVGGVPGSSEVVPAAAAAESSGSGRARGSSAPADHENAAADAGGRSG 523
            TAA AENETSGRV  GPQVAQAATLVVPDPGVGGVPGSSE VP AAA ESSGSGR +GSSAPA  EN AADAGGR G
Sbjct: 1096 TAAFAENETSGRVVGGPQVAQAATLVVPDPGVGGVPGSSEAVPPAAA-ESSGSGRGKGSSAPAHLENTAADAGGRRG 1171
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BLAST of mRNA_Ecto-sp13_S_contig5963.16525.1 vs. uniprot
Match: D7FXU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU3_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.020e-20
Identity = 58/68 (85.29%), Postives = 59/68 (86.76%), Query Frame = -2 
Query:  386 MPGGTHHRRRGHGHHGTDAAAATAASAENETSGRVAVGPQVAQAATLVVPDPGVGGVPGSSEVVPAAA 589
            MPGGTHHRRR HGH GTDAAA T  SAENETSGR A GPQVAQAATLVVPD GVGGV GSS+VVPAAA
Sbjct: 1087 MPGGTHHRRRSHGHQGTDAAANT--SAENETSGRAAGGPQVAQAATLVVPDLGVGGVSGSSDVVPAAA 1152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5963.16525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBW2_9PHAE6.830e-2284.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXU3_ECTSI2.020e-2085.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5963contigEcto-sp13_S_contig5963:2185..2774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size590
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463828.7309997-UTR-Ecto-sp13_S_contig5963:2184..22211681463828.7309997-UTR-Ecto-sp13_S_contig5963:2184..2221Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5963 2185..2221 +
1681463828.7516472-UTR-Ecto-sp13_S_contig5963:2530..27741681463828.7516472-UTR-Ecto-sp13_S_contig5963:2530..2774Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5963 2531..2774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463828.7417026-CDS-Ecto-sp13_S_contig5963:2221..25301681463828.7417026-CDS-Ecto-sp13_S_contig5963:2221..2530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5963 2222..2530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5963.16525.1prot_Ecto-sp13_S_contig5963.16525.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5963 2222..2530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5963.16525.1

>prot_Ecto-sp13_S_contig5963.16525.1 ID=prot_Ecto-sp13_S_contig5963.16525.1|Name=mRNA_Ecto-sp13_S_contig5963.16525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MWIAFQYCIVPGFLSTINQTPGNLSPKNPVPTVVPDGGRTGNTMNVSPLS
SMPCMQATSQTPSLTAKSRHIKKSTGTRSIYSERLPTTATRIRSRVLMVG
WS*
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mRNA from alignment at Ecto-sp13_S_contig5963:2185..2774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5963.16525.1 ID=mRNA_Ecto-sp13_S_contig5963.16525.1|Name=mRNA_Ecto-sp13_S_contig5963.16525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5963:2185..2774+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCATCAAAAGTGCCATACACTTTGGTGTAGACCTATATGTGGATTGCGT
TTCAATACTGTATAGTTCCAGGTTTCCTTTCGACCATCAATCAAACCCCG
GGCAACCTTTCGCCAAAAAATCCGGTTCCCACGGTAGTGCCTGACGGTGG
CAGAACGGGCAACACAATGAACGTTTCCCCCCTGTCTAGTATGCCCTGTA
TGCAGGCCACCTCGCAGACACCATCGTTGACCGCAAAATCCAGACATATC
AAGAAATCGACCGGAACCCGCTCAATCTACTCCGAACGATTACCCACTAC
GGCCACCCGCATCCGCAGCCGCGTTCTCATGGTCGGCTGGAGCTGACGAG
CCCCTCGCTCTCCCGGACCCCGAAGATTCCGCCGCTGCCGCCGCCGGCAC
GACTTCCGAACTTCCGGGGACTCCTCCGACGCCCGGGTCAGGTACGACCA
GGGTGGCAGCCTGTGCCACCTGCGGGCCCACCGCCACCCGTCCCGAGGTC
TCATTCTCTGCGGAGGCGGCGGTGGCGGCGGCGGCATCGGTCCCGTGGTG
TCCGTGACCCCGCCGCCGGTGGTGCGTACCCCCGGGCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5963:2185..2774+

>mRNA_Ecto-sp13_S_contig5963.16525.1 ID=mRNA_Ecto-sp13_S_contig5963.16525.1|Name=mRNA_Ecto-sp13_S_contig5963.16525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5963:2185..2774+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGATTGCGTTTCAATACTGTATAGTTCCAGGTTTCCTTTCGACCAT
CAATCAAACCCCGGGCAACCTTTCGCCAAAAAATCCGGTTCCCACGGTAG
TGCCTGACGGTGGCAGAACGGGCAACACAATGAACGTTTCCCCCCTGTCT
AGTATGCCCTGTATGCAGGCCACCTCGCAGACACCATCGTTGACCGCAAA
ATCCAGACATATCAAGAAATCGACCGGAACCCGCTCAATCTACTCCGAAC
GATTACCCACTACGGCCACCCGCATCCGCAGCCGCGTTCTCATGGTCGGC
TGGAGCTGA
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