mRNA_Ecto-sp13_S_contig59616.16523.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59616.16523.1
Unique NamemRNA_Ecto-sp13_S_contig59616.16523.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Match: D7FVW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVW4_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.710e-22
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1
Query:   16 QAAVITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIKAQAPGAKVSPTLVSRAAMLDV 213
            + AVITGGNTGLGKETAVRLAQLGADVTIACRNPD+AF AL+DIKAQAPGAKV    +  A++  V
Sbjct:  114 KTAVITGGNTGLGKETAVRLAQLGADVTIACRNPDKAFAALDDIKAQAPGAKVGAMPLDLASLDSV 179          
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Match: A0A7S2UUD6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUD6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.770e-12
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   25 VITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIKAQAPGAKVSPTLVSRAAM 204
            VITGGNTGLGKETA+RLA LGA+V I CR PD    A+EDIK  +   KVS   +  A+M
Sbjct:  102 VITGGNTGLGKETAIRLAGLGANVVITCRRPDTIEAAIEDIKKASKSNKVSAMTLDLASM 161          
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Match: A0A150QQT1_SORCE (Short-chain dehydrogenase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150QQT1_SORCE)

HSP 1 Score: 65.1 bits (157), Expect = 9.870e-11
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   16 QAAVITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIKAQAPGAKVSPTLVSRAAMLDV 213
            + AVITGGNTG+G ETA  LA+ GA V +ACR+ +RA  A+E IKA+APGA V      RA  LD+
Sbjct:   22 RVAVITGGNTGIGLETARALAERGATVVLACRDMERAGAAVEQIKARAPGATV------RAVRLDL 81          
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Match: A0A7S3GFF6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GFF6_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 1.480e-10
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   16 QAAVITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIKAQAPGAKVS 177
            +  ++TG NTG+GKETA  LA+ GA+V + CRN +RA GA++DI A+ P AKV+
Sbjct:   24 KVIIVTGANTGIGKETARVLAKAGAEVVMGCRNEERAEGAIKDITAEIPSAKVT 77          
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Match: UPI001990D8FC (SDR family oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI001990D8FC)

HSP 1 Score: 63.2 bits (152), Expect = 4.890e-10
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   16 QAAVITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIKAQAPGAKVS 177
            + A++TG N+G+G ETA  LA+ GA+V IACRNPD+   AL  I+  APGAKVS
Sbjct:   15 RTAIVTGANSGIGFETARMLARKGAEVIIACRNPDKGTAALARIREDAPGAKVS 68          
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Match: A0A0D2KUL0_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KUL0_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 7.380e-10
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   25 VITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIKAQAPGAKVS 177
            VITG NTG+G E A+ LA+   DVT+ACRN D+A  A + IKA  PGAKVS
Sbjct:   32 VITGANTGIGFEAALDLAKKDYDVTLACRNDDKAAAAAQRIKAAVPGAKVS 82          
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Match: A0A7S3GFH5_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GFH5_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 9.320e-10
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   16 QAAVITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIKAQAPGAKVS 177
            +  ++TG NTG+GKETA  LA+ GA+V + CRN +RA GA++DI A+ P AKV+
Sbjct:   24 KVIIVTGANTGIGKETARVLAKAGAEVVMGCRNEERAEGAIKDITAEIPSAKVT 77          
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Match: A0A318EF04_9GAMM (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Sinimarinibacterium flocculans TaxID=985250 RepID=A0A318EF04_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 1.280e-9
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   25 VITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIKAQAPGAKVSPTLVSRAAMLDV 213
            V+TG ++GLG ET+V LA  GA+V +ACRNPDRA  AL+ ++ +APGAK     +  A +  V
Sbjct:   19 VVTGASSGLGLETSVALAAAGAEVIMACRNPDRAGAALDQVQRRAPGAKAELMTLDLADLASV 81          
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Match: UPI001E2CF7B0 (oxidoreductase n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E2CF7B0)

HSP 1 Score: 62.0 bits (149), Expect = 1.300e-9
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   16 QAAVITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIKAQAPGAKVSPTLVSRAAMLD 210
            + A++TG N+GLG +TA RLA+ GA V +ACRNPD+A  AL++++  AP A V+ TL    A LD
Sbjct:   15 RTALVTGANSGLGLQTATRLARAGATVIMACRNPDKAATALDEVRRAAPDATVT-TLPLDLASLD 78          
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Match: UPI000A822DD1 (SDR family NAD(P)-dependent oxidoreductase n=2 Tax=Micrococcaceae TaxID=1268 RepID=UPI000A822DD1)

HSP 1 Score: 58.2 bits (139), Expect = 1.540e-9
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   25 VITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIKAQAPGAKVSPTLVSRAA 201
            ++TG N G+G  T+++LAQ GA+V +ACRNP +A  AL  I+A+ P AKVS T++  A+
Sbjct:   24 LVTGANAGIGFWTSLQLAQRGAEVILACRNPRKAEAALSAIRARVPHAKVSTTIMDVAS 82          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59616.16523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVW4_ECTSI2.710e-2275.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UUD6_9STRA9.770e-1260.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A150QQT1_SORCE9.870e-1156.06Short-chain dehydrogenase n=1 Tax=Sorangium cellul... [more]
A0A7S3GFF6_9EUKA1.480e-1053.70Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
UPI001990D8FC4.890e-1057.41SDR family oxidoreductase n=1 Tax=Deltaproteobacte... [more]
A0A0D2KUL0_9CHLO7.380e-1060.78Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A7S3GFH5_9EUKA9.320e-1053.70Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A318EF04_9GAMM1.280e-949.21NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]
UPI001E2CF7B01.300e-950.77oxidoreductase n=1 Tax=Rhabdothermincola sp. EGI L... [more]
UPI000A822DD11.540e-949.15SDR family NAD(P)-dependent oxidoreductase n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59616contigEcto-sp13_S_contig59616:6..221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score100.1
Seed ortholog evalue4.3e-19
Seed eggNOG ortholog2880.D7FVW4
Model size216
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
Cds size216
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463828.6599557-CDS-Ecto-sp13_S_contig59616:5..2211681463828.6599557-CDS-Ecto-sp13_S_contig59616:5..221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59616 6..221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59616.16523.1prot_Ecto-sp13_S_contig59616.16523.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59616 6..221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59616.16523.1

>prot_Ecto-sp13_S_contig59616.16523.1 ID=prot_Ecto-sp13_S_contig59616.16523.1|Name=mRNA_Ecto-sp13_S_contig59616.16523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MCIILQAAVITGGNTGLGKETAVRLAQLGADVTIACRNPDRAFGALEDIK
AQAPGAKVSPTLVSRAAMLDV*
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mRNA from alignment at Ecto-sp13_S_contig59616:6..221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59616.16523.1 ID=mRNA_Ecto-sp13_S_contig59616.16523.1|Name=mRNA_Ecto-sp13_S_contig59616.16523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59616:6..221+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTATCATACTGCAGGCGGCGGTTATCACGGGAGGAAACACGGGTTT GGGCAAGGAGACCGCGGTGCGGCTAGCGCAGCTTGGGGCCGACGTGACAA TCGCCTGCAGGAACCCGGACAGGGCCTTCGGGGCGCTGGAGGACATCAAG GCTCAAGCCCCCGGGGCAAAGGTTAGTCCAACCCTCGTATCGCGTGCCGC TATGCTTGATGTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59616:6..221+

>mRNA_Ecto-sp13_S_contig59616.16523.1 ID=mRNA_Ecto-sp13_S_contig59616.16523.1|Name=mRNA_Ecto-sp13_S_contig59616.16523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59616:6..221+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTATCATACTGCAGGCGGCGGTTATCACGGGAGGAAACACGGGTTT
GGGCAAGGAGACCGCGGTGCGGCTAGCGCAGCTTGGGGCCGACGTGACAA
TCGCCTGCAGGAACCCGGACAGGGCCTTCGGGGCGCTGGAGGACATCAAG
GCTCAAGCCCCCGGGGCAAAGGTTAGTCCAACCCTCGTATCGCGTGCCGC
TATGCTTGATGTCTGA
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