mRNA_Ecto-sp13_S_contig59612.16522.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59612.16522.1
Unique NamemRNA_Ecto-sp13_S_contig59612.16522.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59612.16522.1 vs. uniprot
Match: D7FYM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.830e-15
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   28 ESSDDDSNALWYALPPFLGATTMGLGAVFSFTAVFFWEEGAGTAVPH 168
            + S + + ALWYALPP LGA TMGLGA+FSFTAVFFWE+G  TA+PH
Sbjct:   98 DGSSEGTTALWYALPPLLGAITMGLGAIFSFTAVFFWEDGDCTAMPH 144
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BLAST of mRNA_Ecto-sp13_S_contig59612.16522.1 vs. uniprot
Match: A0A6H5JWS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.360e-13
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   28 ESSDDDSNALWYALPPFLGATTMGLGAVFSFTAVFFWEEGAGTAVPHV 171
            E S D +  LW A+PPFLGA  MGLGA+F+FTA+F W+ G GTA+PHV
Sbjct:  134 EESSDSTILLWLAVPPFLGAIAMGLGAIFTFTAIFAWKYGGGTAIPHV 181
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BLAST of mRNA_Ecto-sp13_S_contig59612.16522.1 vs. uniprot
Match: A0A6H5KAL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL4_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.130e-5
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   55 LWYALPPFLGATTMGLGAVFSFTAVFFWEEGAGTA 159
            LW+AL PFLGA ++GLGAVFSFT++ FW++    A
Sbjct:  113 LWFALLPFLGALSLGLGAVFSFTSLCFWKDAGSPA 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59612.16522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYM8_ECTSI2.830e-1570.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JWS2_9PHAE6.360e-1362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAL4_9PHAE1.130e-560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59612contigEcto-sp13_S_contig59612:3..188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size186
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_008650.1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463828.6282675-CDS-Ecto-sp13_S_contig59612:2..1881681463828.6282675-CDS-Ecto-sp13_S_contig59612:2..188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59612 3..188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59612.16522.1prot_Ecto-sp13_S_contig59612.16522.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59612 3..188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59612.16522.1

>prot_Ecto-sp13_S_contig59612.16522.1 ID=prot_Ecto-sp13_S_contig59612.16522.1|Name=mRNA_Ecto-sp13_S_contig59612.16522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
DDDLWYAFEESSDDDSNALWYALPPFLGATTMGLGAVFSFTAVFFWEEGA
GTAVPHVSAEE*
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mRNA from alignment at Ecto-sp13_S_contig59612:3..188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59612.16522.1 ID=mRNA_Ecto-sp13_S_contig59612.16522.1|Name=mRNA_Ecto-sp13_S_contig59612.16522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59612:3..188+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGATGACCTGTGGTACGCATTCGAAGAATCGAGCGACGACGACAGTAA
TGCCCTCTGGTACGCCTTGCCCCCTTTCCTCGGAGCCACCACCATGGGCC
TGGGTGCTGTTTTTTCCTTCACGGCAGTGTTCTTCTGGGAGGAGGGTGCC
GGCACGGCCGTGCCCCACGTGAGTGCTGAAGAATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59612:3..188+

>mRNA_Ecto-sp13_S_contig59612.16522.1 ID=mRNA_Ecto-sp13_S_contig59612.16522.1|Name=mRNA_Ecto-sp13_S_contig59612.16522.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59612:3..188+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGATGACCTGTGGTACGCATTCGAAGAATCGAGCGACGACGACAGTAA
TGCCCTCTGGTACGCCTTGCCCCCTTTCCTCGGAGCCACCACCATGGGCC
TGGGTGCTGTTTTTTCCTTCACGGCAGTGTTCTTCTGGGAGGAGGGTGCC
GGCACGGCCGTGCCCCACGTGAGTGCTGAAGAATAG
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