mRNA_Ecto-sp13_S_contig596.16518.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig596.16518.1
Unique NamemRNA_Ecto-sp13_S_contig596.16518.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig596.16518.1 vs. uniprot
Match: A0A6H5KKX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX4_9PHAE)

HSP 1 Score: 625 bits (1612), Expect = 4.000e-218
Identity = 308/324 (95.06%), Postives = 313/324 (96.60%), Query Frame = 1 
Query:    1 MSFPGPEAEEQTLHTFFGKHIPGGETSKLRPACTFVQQFIAQELCGTIANDPTFDELWMHFQGILGGIFGKQDATKGPETGPTSRICGSTTFENSWMFATTSFYSLSGLSDALKPTRAGGSSSSNSNSRRRNRQGDPRLCGMEPMAVSLLSLLLARPPESSPPDTKNLFSVLLEPHKVWYSFTCTSPPMPPHTLAFLRHEGLPGLVLFENSRLYTHCLSSPPSLFPQGRMPHHAVRFQEVPGGGLVGGGAAAEVVRAAPDLNLSALELYLFSFAWYALSSYEDFYHGLEGPGRLTVPHRTHHSMEPAFRQERVALGWRRWVCVG 972
            MSFP PEAEEQTLHTFFG+HIPGGETSKLRPACTFVQQFIAQELCGTIANDPTFDELWMHFQ ILGGIFGKQDATKGPE+G TSRICGSTTFENSWMFATTSFYS+SGLSDALKPTRAGGSSS NSNSRRRNR GDPRLCGMEPMAVSLLSLLLARPPESSPPDTKNLFSVLLEP KVWYSFTCTSPPMPPHTLAFLRHEGLPGLVLFENSRLYTHCLSSPPSLFPQGRMPHHAVRFQEVPGG LVGGGAAAEVVRAAPDL LSALELYLFSFAWYALSSYEDFYHGLEGPGRL+VPHRTHHSMEPAFRQERVALGWRR   +G
Sbjct:    1 MSFPDPEAEEQTLHTFFGEHIPGGETSKLRPACTFVQQFIAQELCGTIANDPTFDELWMHFQAILGGIFGKQDATKGPESGVTSRICGSTTFENSWMFATTSFYSVSGLSDALKPTRAGGSSSRNSNSRRRNRPGDPRLCGMEPMAVSLLSLLLARPPESSPPDTKNLFSVLLEPQKVWYSFTCTSPPMPPHTLAFLRHEGLPGLVLFENSRLYTHCLSSPPSLFPQGRMPHHAVRFQEVPGGDLVGGGAAAEVVRAAPDLKLSALELYLFSFAWYALSSYEDFYHGLEGPGRLSVPHRTHHSMEPAFRQERVALGWRRHGVIG 324
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BLAST of mRNA_Ecto-sp13_S_contig596.16518.1 vs. uniprot
Match: D7FGU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU8_ECTSI)

HSP 1 Score: 369 bits (948), Expect = 6.210e-118
Identity = 201/267 (75.28%), Postives = 205/267 (76.78%), Query Frame = 1 
Query:  175 MHFQGILGGIFGKQDATKGPETGPTSRICGSTTFENSWMFATTSFYSLSGLSDALKPTRAGGSSSSNSNSRRRNRQGDPRLCGMEPMAVSLLSLLLARPPESSPPDTKNLFSVLLEPHKVWYSFTCTSPPMPPHTLAFLRHEGLPGLVLFENSRLYTHCLSSPPSLFPQGRMPHHAVRFQE-VPGGGLVGGGAAAEVVRAAPDLNLSALELYLFSFAWYALSSYEDFYHGLEGPGRLTVPHRTHHSMEPAFRQERVALGWRRWVCVG 972
            MHF+ ILGGIFGKQDATKGPE+GPTSRICGSTTFENSWMFATTSFY LSGLSDALKPTRAGGSSSSNSN RRRNR GDPRLCGMEPMAVSLLSLLLARPPESSPPDTKNLFSVLL                                                  LFPQGRMPHHAVRFQE VPGG LVGGGAAAEVVRAAPDL LS LELYLF FAWYALSSYEDFYHGLEGPGRLTVP+RTHHSMEPAFRQERVALGWRR   +G
Sbjct:    1 MHFKAILGGIFGKQDATKGPESGPTSRICGSTTFENSWMFATTSFYRLSGLSDALKPTRAGGSSSSNSNGRRRNRPGDPRLCGMEPMAVSLLSLLLARPPESSPPDTKNLFSVLL--------------------------------------------------LFPQGRMPHHAVRFQEEVPGGDLVGGGAAAEVVRAAPDLELSTLELYLFHFAWYALSSYEDFYHGLEGPGRLTVPYRTHHSMEPAFRQERVALGWRRHGVIG 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig596.16518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKX4_9PHAE4.000e-21895.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGU8_ECTSI6.210e-11875.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig596contigEcto-sp13_S_contig596:604..5599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size972
Hectar predicted targeting categoryother localisation
Exons7
Cds size972
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig596.16518.1prot_Ecto-sp13_S_contig596.16518.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig596 604..5599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463828.2017212-CDS-Ecto-sp13_S_contig596:603..7501681463828.2017212-CDS-Ecto-sp13_S_contig596:603..750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig596 604..750 -
1681463828.211598-CDS-Ecto-sp13_S_contig596:1135..12921681463828.211598-CDS-Ecto-sp13_S_contig596:1135..1292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig596 1136..1292 -
1681463828.2208862-CDS-Ecto-sp13_S_contig596:1999..21491681463828.2208862-CDS-Ecto-sp13_S_contig596:1999..2149Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig596 2000..2149 -
1681463828.231661-CDS-Ecto-sp13_S_contig596:2949..30961681463828.231661-CDS-Ecto-sp13_S_contig596:2949..3096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig596 2950..3096 -
1681463828.2423491-CDS-Ecto-sp13_S_contig596:3624..36961681463828.2423491-CDS-Ecto-sp13_S_contig596:3624..3696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig596 3625..3696 -
1681463828.2530642-CDS-Ecto-sp13_S_contig596:4417..45821681463828.2530642-CDS-Ecto-sp13_S_contig596:4417..4582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig596 4418..4582 -
1681463828.2732952-CDS-Ecto-sp13_S_contig596:5465..55991681463828.2732952-CDS-Ecto-sp13_S_contig596:5465..5599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig596 5466..5599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig596.16518.1

>prot_Ecto-sp13_S_contig596.16518.1 ID=prot_Ecto-sp13_S_contig596.16518.1|Name=mRNA_Ecto-sp13_S_contig596.16518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=324bp
MSFPGPEAEEQTLHTFFGKHIPGGETSKLRPACTFVQQFIAQELCGTIAN
DPTFDELWMHFQGILGGIFGKQDATKGPETGPTSRICGSTTFENSWMFAT
TSFYSLSGLSDALKPTRAGGSSSSNSNSRRRNRQGDPRLCGMEPMAVSLL
SLLLARPPESSPPDTKNLFSVLLEPHKVWYSFTCTSPPMPPHTLAFLRHE
GLPGLVLFENSRLYTHCLSSPPSLFPQGRMPHHAVRFQEVPGGGLVGGGA
AAEVVRAAPDLNLSALELYLFSFAWYALSSYEDFYHGLEGPGRLTVPHRT
HHSMEPAFRQERVALGWRRWVCVG
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mRNA from alignment at Ecto-sp13_S_contig596:604..5599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig596.16518.1 ID=mRNA_Ecto-sp13_S_contig596.16518.1|Name=mRNA_Ecto-sp13_S_contig596.16518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig596:604..5599- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTTCCCTGGTCCCGAAGCCGAGGAACAAACGCTCCACACTTTCTT
TGGCAAGCACATCCCTGGAGGAGAGACATCGAAGCTACGCCCCGCTTGCA
CCTTTGTGCAGCAGTTTATCGCACAGGAGCTGTGGTGGGTACCTGTACGC
GACCGTCGACATATTATAGTGCTTGCTACAGCAGTAGTCCCATCACACAG
CGTTGCTTTGGCCCTTGTTGGCGATGACCTGCATACATCACCAAACATGC
GGCAGGCCGGGTCTGTGCCCGTTTGGCCATTTTCGTGCCGTAGGCAGCCG
GTTACAGTAGTTTAGACTACGGGTGAAGAACCAGTTGGTGCTGCCCGCGA
GCGGATGCTCTCCAGCTATTGAATGCGGAAATTTTTCCCTCCTACTACAA
CCGATTGGCTTTGACGGAATTTGTACGCCCTGCAGTTGGCGTGGCACGGA
ACGGTATGTGTCTGTGTCTCGCGTGCGTTTTCGCCACAACTCTCAGCAGG
AGGCAGGGAGGCAGCTCACGCATCGTTTGTCGTTTGTGTTCTTACGCGAG
CCAAAACACCACATCAAGACTTGGGTGCAGAAATGTATAGTGCAGTACGA
TTCCTGTGCGAGCTTGAGGGCATTATCTGTCTCCAGCATGAGCTCGTCGT
CTCACTGCGGTATTGCTATTGCAATTGATCGTCAAGGCGGCAAGGGATCG
GTGCCGTCCTGGCGTGTGCAGACTGCAACCTCCCTGCTGACTTCACCCGA
CAGTTGATGCTGACCACAAAGGCCCGGCGGGACATCCATGCTTTTGGAAG
CTGTAGCGTGTCAGAATTGCGAACCAGCGATAGGAGTGGGAATCACGACG
AATTGATTGTGTACCAGATACCTCACACCACTCCAAGCGACGATGATGGT
GTACAAATTGCGCTGGGTGCGTACCACCACCTCGCATTTCTCTCCGCCAC
TTCGACCCCGCTGTGCCCTCTTCCTTCCCTTCCCTTGCCGTGGTGTTTTC
ATATATTTCTTTTTCAGTGGAACGATCGCCAACGATCCGACTTTCGATGA
GCTGTGGATGCACTTTCAGGGGATTTTGGGCGGGATTTTCGGGAAGCAGG
ATGCGACGAAAGGCCCCGAGACCGGCCCCACTTCTCGCATCTGCGGGAGC
ACGACTTTCGAAAACAGCTGGATGTTCGCCACGTGAGTTTTTCGTTTACG
AAAGGGCTAACGAAAGCAAGCAATGGCAAACGTGTTTATGCGCTCGGGGC
TCGAACATAATATCTGCCTGAGACATTTTCAACTGCGAGATCATGTGTAG
GTGCTAACTCGGCGTGAACGGTTTCCCTAGAGTAGTCGTAGTCGTAGCTG
GTACAGAAACTTAGCGGCGCGGACGAACCCCAAAGTTGGATGCGTGTTGT
TGCGGTCCTCAGGGCTTGCAGCGCGATGTGTGTGGTTTCCGCTGCGGTCA
TTATGTGAAGGGGTGAGACCACTGCATTGTGCGAACAAACAAGCTGGGGG
TGCAGAACACGGCCTCGTCAAGGACGCCGGCCTCCTGCCATCGCCTGATC
GTGCGGCGTCGATGGTCCGCTCAACACTGGCCGAGTGTGCCATGGCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTGCCTCTC
GTTCTCTCTTTGCCTCTCTTTCTCTTGGCCGCTTGTCGATGTCATCGTCC
TCCTACATGTAGTTTGCGTTGGCCTACCGTTATCTAACGTACCACTTGAT
TGAGGAAGCTGCATGAGGGCAGGCACCGCTTCCGCCGTTTCCGTCGATGT
TGTCGGGGATCATCCAGTGGCAGGTTGCCTCTCTCTCGTCTAAATCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCGTCTAAATGTCTTTCTCTCTCTCATC
CAGCACCTCATTCTACAGCCTTTCCGGCCTGTCCGACGCCCTGAAACCAA
CGCGCGCTGGAGGGTCGAGTAGCAGGTGAGGCCAAAGAGGGGGCGCGGCG
AAGGAGGAGGGGAAGGGGGTTGTACCATCGGATTTTTGTTGCCGATCCAC
TCGAGCATCTGCCAACCGTCCTCCTCGGGGGGACCGACGAGGGTGGTGCC
ACAGATATTCAGTTATTGTTCGAGAGCAAATCTGTGAATTCATGTTGCAC
GGGCGGGGGGTCGGGTTCGTTGTCATTCGTGGTATTATCGTCCAACCACC
AGCTGTTCGCCTTGGATGGCTTTGATCTACGTATGGATAGTAGGGGGGGT
ATTTTGTCCAGTTGTTGTTGAGATGCCGGTGGTACTCCTGCTGTGTGTGC
CAGTCTCGTCCGTCCATGATATACAGGCATCTCCGGCGATGCCTTGTGTG
TCCGCCTTGAAGAAGACTCCTGCACTTACCTACGCCGAGATTGCGTCTTG
ACCGCATCGGAGCTCGCTTTCATTGCTCGATATTGCCCGCAACTTCACTT
GTCCTTGTGTTGGTGCGATGGAACTGCTGTCGCGCGGCAACCAACATCAG
CAGCAACAGCAACAGCAGGAGGAGGAATAGGCAGGGCGATCCGAGATTGT
GCGGCATGGAACCCATGGCGGTTTCGCTCCTGTCGCTCCTGCTGGCTCGC
CCCCCGGAGTCGTCTCCTCCTGACACCAAGAATCTCTTCAGCGTGCTTCT
GTGAGTACGCAGCATGGCGTACCTGGTATCTTCACTACCACGTCAAGCCG
TGGCAAGAAGGAGCCTTTTCGGCCTCTTTTGGCACCCTCCACATTCCAGA
TTAAAACTGAAACATGTTTCGCTATTTTTTCTCTTGTTCGAGTGGTCCAG
AAACGGCGCTCCACACCAATAGCGAAGAAAGCGCCGACCCTAACCCAGGA
GTCCCGCAGAATCATTGAAGTAAATAGGGATTGGGGGGGTCCGCGGCACG
ACTAGAAACATTGGCACAAAATGTCTTTCTTGGTTTTGTTACGCGCGATG
CCAACATGAACCGAGATCCTCCCTTCGGCGTGCACGCAAATCCAACGCCG
TCTGCTGTGGTGAGGGTTAACGTTAGTTCGGGCCCCTCCTCGTGAGGGTG
ACTTCGAGATACAGCTTAGAGCGACAATCATTTTGACCGTTCGAGCTCCA
GGCAAGTTTTGGCTTTGATGCATTTTGCTTGAAAACGAGACGCTCTCGTT
GAAGGCCCGCCACATCGCTTGCAAGTTGGATGATGGGTGTTGGGTATTGG
CGTGCTTTGGCGGTGTTTGCCTTTGCGGTGCATGCAGCCGTGAAGAAGCA
ACACCTCGCGGTCGAAGTTTCCTACCCTTTCGTACAAGTACGCGATTGCT
AATGCTTGCACACACCTTTGAGAACGAATGCCTCGCACCCCCCGGTCACC
AGAAAACAACGGAAGTTACCATTATCTCCATCTTGACGACGTTGCCATGC
TCGCCTCGCTTTCCGGCGTGCTCACTTTCTGTTTTTGTCGGCGTTGACAG
AGAGCCACATAAAGTGTGGTACTCCTTCACGTGTACGAGCCCACCCATGC
CGCCGCATACTCTGGCCTTTCTGAGGCACGAGGGTCTGCCTGGGCTGGTC
TTGTTCGAAAACTCTCGGCTCTACACGCACTGCCTTTCGAGCCCACCTAG
GTACAGTACGCCTGCTGTGGGTGTTTGTCATGGGGGGGTCAGCGTTCCAA
GGAGAAGAGAGAGGGCGTGGGGCGCTCAGTCCTTGCGTCCCTTCGGCTTG
AAGCCGTTGGCTGCGCATCTTATCTCCCTTGGGGGCATCGGGATCCCCGT
TCCGAGGACCGTTCTCAGGACCGTTCTCATATCTGGGTCATGCCGTGATT
TTCAGCTTTGTGGCTGCTCGTGATGCCATTGCGAGGTTGCTGTTTTGCGA
CAGAGTTTTTCATCAAATGCGTCGGGGATCGTGTTGCGAATGCCACTCCG
TGGTGGTATGTTAAATCCCTTCATACCAGGTAGGCTTTATCATCTTCGAT
GATTTGGCCATTGTTGGGATTACGTTTGTACTTTTATGGCTGCTTCGTCT
TGTACTTGGCCGTAGAAGACAGGTGGCGTACACGTCACAAATCCCTGGTG
ATTTTCTTCAATTTTTATGGCCCGATTACTCTGCAGCGAATGCAGTAAGG
ATGCGGGAAATGATGGCGATGGAACGGTGTCGTCGACATCTTTCCGACAA
CGCTTGATCTGATTTGCCATCCTCTTGCCCATGGACGTTTTTTTGTCGTG
TGGTATCTTTGCAACCTGTGGGTAAACACCTGCTGTATTCATATGTTATG
ACCCGAGCGACCGTTGTCCCCACTTCTACCGTCGCCTTTTTCTCTCCAAT
TTTTCAGCTTGTTCCCGCAGGGGCGGATGCCTCACCACGCCGTGAGGTTC
CAGGAGGTTCCAGGAGGCGGCCTTGTGGGGGGAGGGGCAGCTGCCGAGGT
CGTGAGGGCGGCGCCCGACCTCAACCTGTCTGCTCTAGAACTGTACCTGT
TTTCCTTCGCCTGGGTACGGACTAGTTGTATGGCTTCGCCGGTTTCGTTG
TTTGTGTCTCGTGTGTCGTTCAAAGGCCAGAACAGATTCGAAGAGGAAGA
GAGTTCTCTGTTTCTTGTCCAAGCTGATCAGATATGTACCTTCCTGGACA
TGAGTAGTCCACTTCTTCTGCCGTTGAGTTAAACGCCTGGGCAAGCCGAT
AGTAGGTTCGCAGCCTGTTGAGTTTTTTGTTGTCTCACCCACAACCACTG
CTGTTGCTTGCCCAGAAAAGGGCATCAGAGTTGACACTGACTGTCCGCGA
GCGTTGGCGGCAACTCCAGGGGTCGCCCTCATAATGACCCACATGCACTA
CGCTTAGCACACGCGGCTGGCTCTTCTTCCCGGTGTTATTTTGCTGCAGT
ACGCCCTCTCCTCTTACGAAGACTTCTACCACGGTCTCGAGGGGCCCGGG
CGACTAACCGTGCCCCACCGAACTCACCACTCAATGGAGCCCGCGTTTCG
GCAGGAGAGAGTGGCTCTGGGATGGCGCAGGTGGGTGTGCGTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig596:604..5599-

>mRNA_Ecto-sp13_S_contig596.16518.1 ID=mRNA_Ecto-sp13_S_contig596.16518.1|Name=mRNA_Ecto-sp13_S_contig596.16518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig596:604..5599- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTTCCCTGGTCCCGAAGCCGAGGAACAAACGCTCCACACTTTCTT
TGGCAAGCACATCCCTGGAGGAGAGACATCGAAGCTACGCCCCGCTTGCA
CCTTTGTGCAGCAGTTTATCGCACAGGAGCTGTGTGGAACGATCGCCAAC
GATCCGACTTTCGATGAGCTGTGGATGCACTTTCAGGGGATTTTGGGCGG
GATTTTCGGGAAGCAGGATGCGACGAAAGGCCCCGAGACCGGCCCCACTT
CTCGCATCTGCGGGAGCACGACTTTCGAAAACAGCTGGATGTTCGCCACC
ACCTCATTCTACAGCCTTTCCGGCCTGTCCGACGCCCTGAAACCAACGCG
CGCTGGAGGGTCGAGTAGCAGCAACAGCAACAGCAGGAGGAGGAATAGGC
AGGGCGATCCGAGATTGTGCGGCATGGAACCCATGGCGGTTTCGCTCCTG
TCGCTCCTGCTGGCTCGCCCCCCGGAGTCGTCTCCTCCTGACACCAAGAA
TCTCTTCAGCGTGCTTCTAGAGCCACATAAAGTGTGGTACTCCTTCACGT
GTACGAGCCCACCCATGCCGCCGCATACTCTGGCCTTTCTGAGGCACGAG
GGTCTGCCTGGGCTGGTCTTGTTCGAAAACTCTCGGCTCTACACGCACTG
CCTTTCGAGCCCACCTAGCTTGTTCCCGCAGGGGCGGATGCCTCACCACG
CCGTGAGGTTCCAGGAGGTTCCAGGAGGCGGCCTTGTGGGGGGAGGGGCA
GCTGCCGAGGTCGTGAGGGCGGCGCCCGACCTCAACCTGTCTGCTCTAGA
ACTGTACCTGTTTTCCTTCGCCTGGTACGCCCTCTCCTCTTACGAAGACT
TCTACCACGGTCTCGAGGGGCCCGGGCGACTAACCGTGCCCCACCGAACT
CACCACTCAATGGAGCCCGCGTTTCGGCAGGAGAGAGTGGCTCTGGGATG
GCGCAGGTGGGTGTGCGTGGGG
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