mRNA_Ecto-sp13_S_contig5958.16516.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Match: D7FLL8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL8_ECTSI) HSP 1 Score: 972 bits (2512), Expect = 0.000e+0 Identity = 526/593 (88.70%), Postives = 537/593 (90.56%), Query Frame = 2
Query: 182 MLRFYNFSPPLPAGYSRSVRKRCAIAAFTTANEMTTMGLNKGGIFCLRGGSDEGDTLQVGGEEENVKRETPTATRASAADSEDDAWPGAEAEGAPFGGVALVTERSTATGGSKDRVSYSVLADGTLEVGLAAERKEPRFRASTAPSPPPHLTTIPPTSRENTTVANTSAGPRRVLRGVRRHAGDLKTGVVEATKEVARETRAAAAAAGACVARAGVAVRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSSSGSRVWGWYAVLTLLHLLANYAAMRTLALRSLSPTRVSLLVTEYLGQALGSTEGRSGTRGSEQDEHDGEXXXXXXXXXXXXXEERKGPALDWMGRRRNQGSAPESVAVLSPFTAARRERILMFPGWFRALKPWGDFLQIHVGVPVRALVREADDLLWLTSLYHDERSMVGVQVSYKPLGAR 1960
M+ NFSPPLPAGYSR VRKRCAIAAFTTANEMTTMG KGG+FCLRGGSDEGD L VGGEEE VKRETPTATRASAADSE +AWPGAE EG PFGGVALVTERSTATGGSKDR + ASTAPSPPPHL TIPP SRENT VAN SA PRRVL+GVRR AGDLKTG+VEATKEVARETRAAAAAAGACVARAGVAVRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGS+SGSRVWGWYAVLTL+HLLANYAAMRTLALRSL+PTR SLLVTEYLGQALGSTEGRSGTRGSEQ XXXXXXXXXXX EERKGPALDWMGR R+QGS PESVAVLSPF AARRERIL+ PGWFRALKPWGDFLQIHVGVPVRALV EADDLLWLTSLYHDERSMVGVQVSYKPLGAR
Sbjct: 1 MMPSCNFSPPLPAGYSRGVRKRCAIAAFTTANEMTTMGHKKGGVFCLRGGSDEGDALHVGGEEEKVKRETPTATRASAADSEGEAWPGAEEEGTPFGGVALVTERSTATGGSKDR----------------------QLPASTAPSPPPHLPTIPPPSRENTAVANASAEPRRVLQGVRRCAGDLKTGLVEATKEVARETRAAAAAAGACVARAGVAVRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEYLGQALGSTEGRSGTRGSEQXXXXXXXXXXXXXXXXXGGEERKGPALDWMGRIRDQGSPPESVAVLSPFAAARRERILVLPGWFRALKPWGDFLQIHVGVPVRALVGEADDLLWLTSLYHDERSMVGVQVSYKPLGAR 571
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Match: W7U3D2_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3D2_9STRA) HSP 1 Score: 264 bits (674), Expect = 1.950e-76 Identity = 162/382 (42.41%), Postives = 212/382 (55.50%), Query Frame = 2
Query: 845 LMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSSSGSRVWGWYAVLTLLHLLANYAAMRTLALRSLSPTRVSLLVTEYLGQALGSTEGRSGTRGSEQDEHDGEXXXXXXXXXXXXXEERKGPALDWMGRRRNQGSAPESVAVLSPFTAARRERILMFPGWFRALKPWGDFLQ--------------------IHVGVPVRALVREADDLLWLTSLYHDERSMVGV 1930
L FLP G+P SV PEY+RY+ W+++QDLS++LRG+LATQA+LEG+GVGR G+TPLAATLQW+ RDGASM+ GL+FTS S NFGVN K+WRLFAD DIG+ L+MLAPL F + FL IC+ASV K+ CG+A GA+ I EH A NN+A++ AK GAQHT SL GLG +WFAR + S RVW Y +LT++HL ANYAAMR LA S++ R+++L+T + E+ +VLSP ARRE I++ G +R K W Q I +GV V+ L R A+ L L L+ E+ M+ +
Sbjct: 136 LHTVFLPVGFPSSVAPEYLRYQQWNVVQDLSTYLRGILATQAILEGVGVGREGATPLAATLQWITRDGASMMSGLVFTSFLSTNFGVNAKSWRLFADFMVDIGITLDMLAPL--FPKN--FLLCICLASVCKSLCGIAAGASNGNIVEHMARTNNLAEVLAKGGAQHTAVSLFGLGFGMWFARVAN----QSPRRVWTAYTLLTVIHLTANYAAMRVLAFTSINRRRLNVLLTAFR----------------------------------------------------------ENASVLSPAEVARRETIIVDVGRWRPPKLWTALFQKGKRRATAELAKDAHAPIWNIRLGVRVKDLTRFAEGLTELQRLFSQEQYMLNM 451
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Match: A0A7S0EV14_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EV14_9CRYP) HSP 1 Score: 248 bits (633), Expect = 1.160e-71 Identity = 130/233 (55.79%), Postives = 176/233 (75.54%), Query Frame = 2
Query: 854 TFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSSSGSRVWGWYAVLTLLHLLANYAAMRTLALRSLSPTRVSLLVTEYL 1552
TFLP+GYP S+ EY +Y+ +++LQDL+S+LRG+L+TQ +LEGMGVG+AG T LAAT+QWMARDG+SM+GGLLFT+ AS++FG++IK WRLFAD ND+ L L+MLAP A+ E FL +IC++SVFKA CGV+ GA AAI +HWA NIAD+GAK GAQHT+ S+L L L FA+A + SS +W + VLT +H+ A Y+ MRTLALR L+ +++ ++ + L
Sbjct: 65 TFLPSGYPASLPDEYTKYQAYNLLQDLTSNLRGILSTQKILEGMGVGKAGVTSLAATMQWMARDGSSMLGGLLFTAFASSSFGIHIKRWRLFADLINDVALLLDMLAP--AYPE--LFLPIICLSSVFKAMCGVSAGACNAAIVQHWATRGNIADVGAKTGAQHTIVSVLALPLGFLFAQAAN----SSLQSLWASFVVLTSIHVWACYSMMRTLALRILTRSQLDRILPKLL 289
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Match: A0A482SIE4_9ARCH (RUS1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIE4_9ARCH) HSP 1 Score: 234 bits (598), Expect = 5.600e-66 Identity = 124/235 (52.77%), Postives = 167/235 (71.06%), Query Frame = 2
Query: 851 NTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAID-NNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSSSGSRVWGWYAVLTLLHLLANYAAMRTLALRSLSPTRVSLLVTEYL 1552
TFLP GYP +V EY Y+ W+++QDL S+LRG++AT AVL GMGVGRA T + AT+ W+ RDGAS+IGGLLFTS++S NF NIK WRLFAD+ N++G+ L+ML P FL L+C+ S KA CGVA GAT AAI+ HW N+ADI AKN AQHTV SL GL +S+ FA+ + G+ S +R+W Y++LT++H+++NY AMR LALR+L+ R +++ +L
Sbjct: 100 QTFLPLGYPKTVPAEYTAYQAWNVIQDLCSYLRGIMATNAVLAGMGVGRADITSIQATILWVLRDGASLIGGLLFTSLSSYNFVQNIKFWRLFADSINNVGITLDMLTPYFPLH----FLPLVCVGSTCKALCGVAAGATNAAISMHWGEKYGNVADILAKNNAQHTVVSLCGLAVSLPFAQ---MAGTISPARLWTIYSILTVVHMVSNYMAMRVLALRTLNRVRFHMILDTFL 327
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Match: A0A813KE75_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KE75_POLGL) HSP 1 Score: 230 bits (586), Expect = 1.220e-64 Identity = 119/247 (48.18%), Postives = 167/247 (67.61%), Query Frame = 2
Query: 833 VRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSSSGSRVWGWYAVLTLLHLLANYAAMRTLALRSLSPTRVSLLVTEYLGQALGST 1573
++ L FLP GYP SV EY Y+ WD +Q + S+LRGVLATQA+L G+GVG+ G+T LAAT+ W+ +DG+ M+GGL F + S F VN+KTWRLFAD +N++GL L++LAP+ G FL +IC+A+VFKA CGV+ GAT AA+T H+A+ +N+AD+ AK G+Q T +L+GL WFA + S + VW + +LTLLH ANY +R+L L +LSP+R+ LL ++ S+
Sbjct: 73 LKASLAGAFLPVGYPHSVSKEYFSYQAWDTVQAMCSYLRGVLATQALLRGVGVGKEGATALAATIIWVLKDGSGMVGGLGFATFCSVGFDVNVKTWRLFADVANNVGLTLDLLAPM----AGDYFLLVICVANVFKAMCGVSAGATKAALTAHFALRDNMADVQAKEGSQETAVTLMGLIAGSWFAMVAN----ESPATVWTAFVLLTLLHTFANYTGVRSLLLPTLSPSRLWLLCCAWVDSKQASS 311
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Match: L1IND8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IND8_GUITC) HSP 1 Score: 215 bits (547), Expect = 1.260e-60 Identity = 107/170 (62.94%), Postives = 137/170 (80.59%), Query Frame = 2
Query: 854 TFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLL 1363
TFLP+GYP S+ EY +Y+ +++LQDLSS+LRG+L+TQ +LEGMGVG+AG T LAAT+QWMARDG+SM+GGLLFT+ AS++FG++IK WRLFAD ND+ L L+MLAP A+ + FL +IC++SVFKA CGVA GA AI +HWA NIAD+GAK GAQHT S+L
Sbjct: 129 TFLPSGYPASLPDEYTKYQAFNLLQDLSSNLRGILSTQKILEGMGVGKAGVTSLAATMQWMARDGSSMLGGLLFTAFASSSFGIDIKRWRLFADLINDVALLLDMLAP--AYPD--LFLPIICLSSVFKAMCGVAAGACNTAIVQHWAARGNIADVGAKTGAQHTFVSVL 294
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Match: W4FX85_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FX85_9STRA) HSP 1 Score: 207 bits (528), Expect = 3.230e-58 Identity = 113/236 (47.88%), Postives = 153/236 (64.83%), Query Frame = 2
Query: 845 LMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPL-PAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSSSGSRVWGWYAVLTLLHLLANYAAMRTLALRSLSPTRVSLLVTEY 1549
L + FLP GYP SV EY+ ++ WD Q + S+LRGVLATQ+VLE +GVG+ TPLAA LQW+ RDG+ M+GGL F V F N+K WRL+AD ND GL L+MLAP P + ++CI+SV KA CGVA GAT +++T H+A +N+ADI AK G+Q T +++GL ++FA AV+ S S VW + VLTL H++ANY A+ L + +L+ R L + Y
Sbjct: 71 LFDMFLPFGYPDSVSHEYLTFQLWDTCQAMCSYLRGVLATQSVLESVGVGKDSVTPLAAALQWVMRDGSGMLGGLFFAYVVGPKFDANVKFWRLYADVINDFGLTLDMLAPFFPLY-----VTEILCISSVCKAMCGVAAGATRSSLTAHFAKHDNMADIAAKEGSQETFVNMVGLVCGMYFANAVN----QSRSTVWLAFLVLTLFHVIANYKAVSALCIPTLNVQRAFLAIRRY 297
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Match: W4FV94_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FV94_9STRA) HSP 1 Score: 208 bits (529), Expect = 6.860e-57 Identity = 118/253 (46.64%), Postives = 159/253 (62.85%), Query Frame = 2
Query: 845 LMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPL-PAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSSSGSRVWGWYAVLTLLHLLANYAAMRTLALRSLSPTRVSLLVTEYLGQALGSTEGRSGTRGS 1600
L + FLP GYP SV EY+ ++ WD Q + S+LRGVLATQ+VLE +GVG+ TPLAA LQW+ RDG+ M+GGL F V F N+K WRL+AD ND GL L+MLAP P + ++CI+SV KA CGVA GAT +++T H+A +N+ADI AK G+Q T +++GL ++FA AV+ S S VW + VLTL H++ANY A+ L + +L+ R L + Y RSGT+ S
Sbjct: 71 LFDMFLPFGYPDSVSHEYLTFQLWDTCQAMCSYLRGVLATQSVLESVGVGKDSVTPLAAALQWVMRDGSGMLGGLFFAYVVGPKFDANVKFWRLYADVINDFGLTLDMLAPFFPLY-----VTEILCISSVCKAMCGVAAGATRSSLTAHFAKHDNMADIAAKEGSQETFVNMVGLVCGMYFANAVN----QSRSTVWLAFLVLTLFHVIANYKAVSALCIPTLNVQRAFLAIRRY----------RSGTKQS 304
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Match: A0A067CAR1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAR1_SAPPC) HSP 1 Score: 208 bits (529), Expect = 9.910e-57 Identity = 111/243 (45.68%), Postives = 160/243 (65.84%), Query Frame = 2
Query: 830 AVRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFL-RLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSSSGSRVWGWYAVLTLLHLLANYAAMRTLALRSLSPTRVSLLVTEYLG 1555
A+R L + FLPAGYP SV +Y+ ++ WD Q + S+LRGVLATQ+VLE +GVG TPLAA LQW+ RDG+ M+GGL F F N+K WRL+AD ND+GL L+MLAP R++ +++C++SV KA CGVA GAT +++T H+A +N+ADI AK G+Q T +LLGL ++FA V+ S + VW + +LT +H++ANY A+ +L + +L+ R +L + + G
Sbjct: 68 AIRSELFDMFLPAGYPSSVTEDYLPFQLWDTCQAMCSYLRGVLATQSVLESVGVGNEAITPLAAALQWVMRDGSGMLGGLFFAYGVGPKFDANVKFWRLYADVINDVGLTLDMLAPFAP-----RYVTQILCVSSVCKAMCGVAAGATRSSLTAHFAKADNMADIAAKEGSQETFVTLLGLLTGMYFANLVN----QSRASVWVAFLLLTAIHVVANYKAVTSLCIPTLNQARATLAIRSFRG 301
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Match: A0A2D4BID4_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BID4_PYTIN) HSP 1 Score: 209 bits (531), Expect = 1.150e-56 Identity = 110/238 (46.22%), Postives = 155/238 (65.13%), Query Frame = 2
Query: 845 LMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSSSGSRVWGWYAVLTLLHLLANYAAMRTLALRSLSPTRVSLLVTEYLGQ 1558
L FLPAGYP SV +Y+ ++CWD +Q + S+LRGVLATQ+VL+ +GVG +TPLAA LQW+ RDG+ M+GGL F +F N+K WRLFAD ND+GL L+MLAP + L+C++S+ K CGVA GAT +++ H+A +N+AD AK G+Q T L GL + ++FA AV+ +S VW +A+LT+LH+ ANY A+ L + +L+ R +L+ YL Q
Sbjct: 98 LQEMFLPAGYPDSVSEDYLAFQCWDTIQAMCSYLRGVLATQSVLQSVGVGDENATPLAAALQWVLRDGSGMLGGLAFAYGVGPHFDSNVKRWRLFADVINDVGLTLDMLAP---YCPAVFVTELLCVSSICKTMCGVAAGATRSSLMTHFAKRDNMADCAAKEGSQETAVKLAGLVVGMYFASAVNASPAS----VWVAFALLTVLHVYANYNAVAGLCIPTLNRQRADILIRRYLQQ 328 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5958.16516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5958.16516.1 >prot_Ecto-sp13_S_contig5958.16516.1 ID=prot_Ecto-sp13_S_contig5958.16516.1|Name=mRNA_Ecto-sp13_S_contig5958.16516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=636bp MLVSMIQPVYNWLGTGVLAFSSPRRTLAEGQSGTSCPTTCSSMLRFYNFSback to top mRNA from alignment at Ecto-sp13_S_contig5958:1637..8180+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5958.16516.1 ID=mRNA_Ecto-sp13_S_contig5958.16516.1|Name=mRNA_Ecto-sp13_S_contig5958.16516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6544bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5958:1637..8180+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5958:1637..8180+ >mRNA_Ecto-sp13_S_contig5958.16516.1 ID=mRNA_Ecto-sp13_S_contig5958.16516.1|Name=mRNA_Ecto-sp13_S_contig5958.16516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1908bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5958:1637..8180+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |