mRNA_Ecto-sp13_S_contig5956.16512.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5956.16512.1
Unique NamemRNA_Ecto-sp13_S_contig5956.16512.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Match: A0A6H5JX01_9PHAE (DUF155 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX01_9PHAE)

HSP 1 Score: 578 bits (1489), Expect = 1.190e-200
Identity = 301/314 (95.86%), Postives = 304/314 (96.82%), Query Frame = 1
Query:    1 MDSLYIDVIHSTTDLRGGLRKARELERPAWEADEYADEEDGYRDGYDQEQXXXXGTGXXXXXXXXEDGGDDAVTRHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFVEVAIELVWNVIIKDVLRLVGGSDR 942
            MDSLYIDVIHSTTDLRGGLRKARELERPAWE DEYAD E+GY DGYDQEQ    GTG  XXXXX EDGGDDAVTRHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFM+GKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVII+YLIFVEVAIELVWNVIIKDVLRLVGGSDR
Sbjct:  264 MDSLYIDVIHSTTDLRGGLRKARELERPAWETDEYADGEEGYGDGYDQEQEEVDGTGVGXXXXX-EDGGDDAVTRHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMMGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIVYLIFVEVAIELVWNVIIKDVLRLVGGSDR 576          
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Match: D8LTX9_ECTSI (DUF155 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTX9_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 1.270e-114
Identity = 193/204 (94.61%), Postives = 193/204 (94.61%), Query Frame = 1
Query:    1 MDSLYIDVIHSTTDLRGGLRKARELERPAWEADEYADEEDGYRDGYDQEQXXXXGTGXXXXXXXX--EDGGDDAVTRHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIG 606
            MDSLYIDVIHSTTDLRGGLRKARELERPAWEADE AD EDGY DGYDQ  XXXX   XXXXXXXX  ED GDDAVTRHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIG
Sbjct:  112 MDSLYIDVIHSTTDLRGGLRKARELERPAWEADESADGEDGYGDGYDQXXXXXXXXXXXXXXXXXXXEDEGDDAVTRHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIG 315          
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Match: A0A835ZB52_9STRA (DUF155 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB52_9STRA)

HSP 1 Score: 265 bits (676), Expect = 6.570e-80
Identity = 155/317 (48.90%), Postives = 195/317 (61.51%), Query Frame = 1
Query:    4 DSLYIDVIHSTTDLRGGLRKARELERPAWEADEYADEEDGYRD-----GYDQEQXXXXGTGXXXXXXXXEDGGDDAVTRH--KDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGG-KRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFVEVAIELVWNVIIKDVLRLVG 930
            D LY DVIHSTTD    L +    +    E DE A++     D       D+E+                     AV  H  KD+   PYG ++FWG + AEE ++LS + +F VG VSE+EL QS DDMTF +   G  K    +K DE+ L T    EKL+YS +LAQSAKLFVFEERL NIIE T  YP+ L  TGKI LT++Q+ +L+GRVL E+NEVNLHSD+LD PE+FWE   WEP Y+ LC YLD+PLR+  +NKRL +LRELLDVL  Q TN HA RLEV++          ELVWNV ++D++ LVG
Sbjct:  155 DVLYSDVIHSTTDKL--LTEEPAEDYATKEGDENAEDSQAETDRESKYARDREREHERSQHSLL-----------AVPSHIGKDMFILPYGCIIFWGFTPAEELKLLSEIRKFAVGPVSESELEQSQDDMTFCFVDAGDDKESRVIKADELVLSTDSALEKLSYSFALAQSAKLFVFEERLGNIIEQTRVYPEELKLTGKIQLTQMQMNKLIGRVLVERNEVNLHSDVLDKPEFFWETQTWEPEYQRLCTYLDMPLRLVVINKRLDVLRELLDVLHNQVTNTHAIRLEVVV----------ELVWNVGVRDIMHLVG 448          
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Match: A0A4D9D3S6_9STRA (DUF155 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3S6_9STRA)

HSP 1 Score: 227 bits (578), Expect = 3.130e-64
Identity = 122/232 (52.59%), Postives = 157/232 (67.67%), Query Frame = 1
Query:  229 KDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFVEVAIELVWNVIIKDVLRL 924
            K I  FPYG  VFWGC++ EE+  +S LT F V  VS+ E  +S+DD  + Y          + + EITL + DP EKLA S SLAQSAKLFVFE+R+D  I +T   P  LA  GK  ++  +I +L G+V  E+NE+NLHSDILDTPE+FWE D WEP Y  LC YLD+P RV+ LNKRL ILRELL+VL TQ  N+H+T+LE+I+I LI VEV ++ V  + + D+L L
Sbjct:  339 KHIFCFPYGCTVFWGCTKEEEERFISMLTPFAVELVSDMEREESYDDFAYFYGS-----SPQILHYEITLTSNDPEEKLALSFSLAQSAKLFVFEDRVDGTITSTKHIPIHLAEFGKTNVSRKEISKLTGKVFLERNEINLHSDILDTPEWFWEADLWEPRYVGLCKYLDLPNRVNILNKRLDILRELLNVLETQLDNSHSTKLELIVIALIIVEVVLQ-VLEIALNDLLHL 564          
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Match: A0A7S2S7I6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7I6_9STRA)

HSP 1 Score: 208 bits (530), Expect = 6.020e-60
Identity = 110/234 (47.01%), Postives = 151/234 (64.53%), Query Frame = 1
Query:  223 RHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTR-FMVGKVSETELAQSFDDMTFVYRHRGGKRG--------VPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFVEVAIELVWN 897
            RHKDI+FFP+G VVFWGC   EE  VLS L+  F     +E EL +S D M F Y       G          +  D++ L +  P EKLA S +LAQSAKLFVFE RLD  I +  + P+ LA +G + LT  ++ R++G++   + +VNLHSDILD PE+ WE + WEP++  LC+YLDI  RV+ LNKRL ++RELLDVL TQ  + +++RLE I+I LI +E+  E++W+
Sbjct:   73 RHKDIIFFPFGCVVFWGCDHEEELGVLSFLSSAFSESLSTEAELQESHDTMAFTYNSNSAGPGNFAATTPRTRVLGDKVHLVSWHPLEKLAVSFALAQSAKLFVFEARLDVTINSVKRIPEELAESGSVSLTRNELSRMMGKLFIARTQVNLHSDILDEPEFLWEYEDWEPSFHKLCSYLDIDHRVELLNKRLDLIRELLDVLDTQLESKNSSRLEWIVIILIIIEILFEVLWD 306          
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Match: A0A3F2RCQ5_9STRA (DUF155 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RCQ5_9STRA)

HSP 1 Score: 204 bits (518), Expect = 4.410e-59
Identity = 111/239 (46.44%), Postives = 158/239 (66.11%), Query Frame = 1
Query:  223 RHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFVEVAIELVWNVIIKDVLRLVGGSD 939
            + KD  +F  G  VFWG + AEE+  L  L  F VG V + E+    +DM ++Y    G   + + ND ITL +   +EKLA S ++AQS+KL VFEER+++ I  T   PQ LAATG I  ++  I +L+GR+  E+++VNL+SD+LD P++FWE+D +EP Y+ +  YL +  RV  LN RL ILRELLDVLS Q  + H T+LE+I+I+LI  EVA+++VWN++IKD+L     SD
Sbjct:   14 QQKDAFYFATGCAVFWGLTRAEEQAHLMALGTFSVGPVKQVEV----EDMDYMY----GDASI-ICNDAITLSSNRASEKLAVSFAMAQSSKLDVFEERVEDTIRETKHVPQNLAATGSIQYSQSDISKLIGRLFIERSDVNLNSDMLDEPDFFWEDDEYEPLYKKVMKYLSVDNRVQILNTRLDILRELLDVLSQQLAHQHDTKLEMIVIWLIVAEVAVQVVWNILIKDILGFFPHSD 243          
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Match: A0A2D4BKL3_PYTIN (DUF155 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKL3_PYTIN)

HSP 1 Score: 210 bits (535), Expect = 6.750e-59
Identity = 117/248 (47.18%), Postives = 159/248 (64.11%), Query Frame = 1
Query:  208 DDAVT----RHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFVEVAIELVWNVIIKDVLRLVGGSD 939
            DDA+     R KD+ +F  G  VFWG + AEE+  L  L  F VG V + E+    +DM + Y          + ND ITL +   +EKLA S ++AQSAKL VFEER++  I+ T   PQ LA TG I  ++  I +L+GR+  E+N+VNL+SD+LD P++FWE+D +EP Y+ +  YLD+  RV  LN RL ILRELLDVLS Q  + H T+LE I+I+LI  EVA++LVWN++IKD+L     SD
Sbjct:  233 DDALVPLAYRQKDVFYFGTGCTVFWGLTRAEEQAHLRALAAFSVGPVKQVEV----EDMDYTYGDVSR-----IVNDAITLSSNRASEKLAISFAMAQSAKLDVFEERVEETIQKTKHIPQNLATTGSIQYSQSDISKLIGRLFIERNDVNLNSDMLDEPDFFWEDDEYEPLYKKMMKYLDVDNRVAILNTRLDILRELLDVLSQQLAHQHDTKLEWIVIWLIVAEVAVQLVWNILIKDILGFFPNSD 471          
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Match: F0WJI1_9STRA (Uncharacterized protein AlNc14C122G6706 n=3 Tax=Albugo TaxID=65356 RepID=F0WJI1_9STRA)

HSP 1 Score: 207 bits (528), Expect = 6.600e-58
Identity = 111/232 (47.84%), Postives = 153/232 (65.95%), Query Frame = 1
Query:  223 RHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFVEVAIELVWNVIIKDVL 918
              KD+ +F  G  VFWG S AEE+E L  L  F +G V + E+    +DM +VY          + ND ITL +   +EKLA S ++AQSAKL VFEER++  I+ T   PQ LA TG I  ++  I +L+GR+  E+N+VNL+SD+LD P++FWE+D +EP Y+ +  YLD+  RV  LN RL ILRELLDVLS Q  + H T+LE I+I+LI  EV +++VWN++IKD+L
Sbjct:  243 EQKDVFYFATGCTVFWGLSRAEEQEHLRALISFSMGPVKQVEV----EDMDYVYGDSNR-----IVNDAITLSSNCASEKLAISFAMAQSAKLDVFEERVEETIQKTKHIPQNLATTGSIHYSQNDISKLIGRLFIERNDVNLNSDMLDEPDFFWEDDEYEPLYKKMMKYLDVDNRVQILNTRLDILRELLDVLSQQLAHQHDTKLEWIVIWLIVAEVVVQIVWNILIKDIL 465          
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Match: A0A8K1CNT9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNT9_PYTOL)

HSP 1 Score: 206 bits (525), Expect = 1.080e-57
Identity = 113/241 (46.89%), Postives = 157/241 (65.15%), Query Frame = 1
Query:  205 GDDAVT---RHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFVEVAIELVWNVIIKDVL 918
            G+D V    R KD+ +F  G  VFWG + AEE+  L  L  F VG V + E+    +DM + Y          + ND ITL++   +EKLA S ++AQSAKL VFEER++  I+ T   PQ LA TG I  ++  I +L+GR+   +N+VNL+SD+LD P++FWE+D +EP Y+ +  YLD+  RV  LN RL ILRELLDVLS Q  + H T+LE I+I+LI  EVA+++VWN++IKD+L
Sbjct:  207 GEDIVPLAYRQKDVFYFGTGCTVFWGLTRAEEQAHLRALMAFSVGPVKQVEV----EDMDYTYGESSR-----IFNDAITLESNRASEKLAISFAMAQSAKLDVFEERVEETIQKTKHIPQNLATTGSIQYSQSDISKLIGRLFIVRNDVNLNSDMLDEPDFFWEDDEYEPLYKKMMKYLDVDNRVQILNTRLDILRELLDVLSQQLAHQHDTKLEWIVIWLIVAEVAVQIVWNILIKDIL 438          
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Match: K3WZW5_GLOUD (DUF155 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZW5_GLOUD)

HSP 1 Score: 205 bits (522), Expect = 1.730e-57
Identity = 111/239 (46.44%), Postives = 154/239 (64.44%), Query Frame = 1
Query:  223 RHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFVEVAIELVWNVIIKDVLRLVGGSD 939
            R KD+ +F  G  VFWG +  EE+  L  L +F VG V + E+    +DM + Y          + ND ITL +   +EKLA S ++AQSAKL VFEER++  I+ T   PQ LA TG I  ++  I +L+GR+  E+++VNL+SD+LD P++FWE+D +EP Y+ +  YLD+  RV  LN RL ILRELLDVLS Q  + H T+LE I+I+LI  EV +++VWN+IIKD+L     SD
Sbjct:  195 RQKDVFYFATGCTVFWGLTRMEEQAHLRALLQFSVGPVKQIEV----EDMDYTYGD-----ATSIVNDAITLSSNLASEKLAISFAMAQSAKLDVFEERVEETIQQTKHIPQNLATTGSIQYSQGDISKLIGRLFIERSDVNLNSDMLDEPDFFWEDDEYEPLYKKMMRYLDVDNRVQILNTRLDILRELLDVLSQQLAHQHDTKLEWIVIWLIVAEVVVQIVWNIIIKDILGFFPRSD 424          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5956.16512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX01_9PHAE1.190e-20095.86DUF155 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LTX9_ECTSI1.270e-11494.61DUF155 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835ZB52_9STRA6.570e-8048.90DUF155 domain-containing protein n=1 Tax=Tribonema... [more]
A0A4D9D3S6_9STRA3.130e-6452.59DUF155 domain-containing protein n=2 Tax=Monodopsi... [more]
A0A7S2S7I6_9STRA6.020e-6047.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3F2RCQ5_9STRA4.410e-5946.44DUF155 domain-containing protein n=2 Tax=Phytophth... [more]
A0A2D4BKL3_PYTIN6.750e-5947.18DUF155 domain-containing protein n=1 Tax=Pythium i... [more]
F0WJI1_9STRA6.600e-5847.84Uncharacterized protein AlNc14C122G6706 n=3 Tax=Al... [more]
A0A8K1CNT9_PYTOL1.080e-5746.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WZW5_GLOUD1.730e-5746.44DUF155 domain-containing protein n=1 Tax=Globispor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5956contigEcto-sp13_S_contig5956:839..5768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score349.7
Seed ortholog evalue1.4e-93
Seed eggNOG ortholog2880.D8LTX9
Preferred nameRMD1
Model size1443
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0008150,GO:0008152,GO:0010467,GO:0012505,GO:0016020,GO:0031090,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0098588,GO:0098805,GO:0098852,GO:0140053
Exons7
EggNOG free text desc.PFAM Uncharacterised ACR, YagE family COG1723
EggNOG OGsCOG1723@1,KOG2861@2759
Ec32 ortholog descriptionProtein of unknown function DUF155
Ec32 orthologEc-12_003940.1
Cds size948
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5956.16512.1prot_Ecto-sp13_S_contig5956.16512.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5956 1334..5768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463827.6699572-UTR-Ecto-sp13_S_contig5956:838..13331681463827.6699572-UTR-Ecto-sp13_S_contig5956:838..1333Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5956 839..1333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463827.6839051-CDS-Ecto-sp13_S_contig5956:1333..15071681463827.6839051-CDS-Ecto-sp13_S_contig5956:1333..1507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5956 1334..1507 -
1681463827.6921294-CDS-Ecto-sp13_S_contig5956:2181..22891681463827.6921294-CDS-Ecto-sp13_S_contig5956:2181..2289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5956 2182..2289 -
1681463827.7044652-CDS-Ecto-sp13_S_contig5956:2568..26291681463827.7044652-CDS-Ecto-sp13_S_contig5956:2568..2629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5956 2569..2629 -
1681463827.7180283-CDS-Ecto-sp13_S_contig5956:3246..34221681463827.7180283-CDS-Ecto-sp13_S_contig5956:3246..3422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5956 3247..3422 -
1681463827.7314296-CDS-Ecto-sp13_S_contig5956:4340..43981681463827.7314296-CDS-Ecto-sp13_S_contig5956:4340..4398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5956 4341..4398 -
1681463827.742568-CDS-Ecto-sp13_S_contig5956:4797..48801681463827.742568-CDS-Ecto-sp13_S_contig5956:4797..4880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5956 4798..4880 -
1681463827.7533557-CDS-Ecto-sp13_S_contig5956:5480..57681681463827.7533557-CDS-Ecto-sp13_S_contig5956:5480..5768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5956 5481..5768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5956.16512.1

>prot_Ecto-sp13_S_contig5956.16512.1 ID=prot_Ecto-sp13_S_contig5956.16512.1|Name=mRNA_Ecto-sp13_S_contig5956.16512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp
MDSLYIDVIHSTTDLRGGLRKARELERPAWEADEYADEEDGYRDGYDQEQ
EDADGTGVGGGGGGGEDGGDDAVTRHKDIMFFPYGAVVFWGCSEAEEKEV
LSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQD
PAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQ
IGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLR
VDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFVEVAIELVWNV
IIKDVLRLVGGSDRG*
back to top

mRNA from alignment at Ecto-sp13_S_contig5956:839..5768-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5956.16512.1 ID=mRNA_Ecto-sp13_S_contig5956.16512.1|Name=mRNA_Ecto-sp13_S_contig5956.16512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5956:839..5768- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTCGCTCTACATCGACGTGATTCACTCGACCACCGACCTTCGGGG GGGGCTCCGGAAGGCTCGCGAGCTCGAACGGCCCGCTTGGGAAGCGGACG AGTACGCCGACGAGGAGGACGGCTACAGGGACGGCTACGACCAAGAGCAA GAGGACGCGGACGGCACCGGTGTCGGCGGCGGCGGCGGCGGCGGCGAGGA CGGAGGCGATGATGCCGTCACCCGCCACAAGGACATCATGTTCTTCCCGT ACGGCGCGGTGGTGTTCTGGGGGTGCTCGGAGGCCGAGGTGTGATCTGAA ACTCCACCGCAGCACAGTGGTAACGCGGCTCGGAAAGTGTGGCGGAGTGG TACACGGTGCAACGTACCACAGCAGAAGTAGCAAGCAGCACCCGTCCGGC GTTTGCGCTGCCGCAGGCGGCAGAGCAGTTGAGCACGCGTCTCGCTACGC GATGGCTGCGATTGCTTGGTTCACGGGAGGCGGTGGTTGTTAGGCCCTGA CCCCGCCGTCGCGCACTCCCTCTTGAGCACACGGCGCCTGGCTTCGTCAG GGCAACGGCAGGTCTTCCGTCGTTGTTTGAAACGGCTTTGTTGGCTGAGG CATATTTTCGTTTCGAGCACGCGGTGAAGTCGTTTTCTATCCCGGAATGG TGTGCAGATCTCCCGTTGCAGTGCGGTCCGCTTGTATTGTGACGGGTATC GGCAACGTAGCAAAGTCATTTTTTCATGGAGACCCTCGCCACACAATTTT CGCGTGGTTTTGCTTTCTTGCCACCTGTACCTCAAATTCACGGGACCTTG TGATCAACGCTGATAATCTTGGCCTCCAGGTTAAACCCCCCCAACTTGTT CTACCGCCCTCGCTTGCGTGTTCTGCCTCGGCTTGCAGGAGAAGGAAGTC CTGTCCAACCTCACCCGCTTCATGGTGGGGAAAGTGTCAGAGACGGAGCT CGCCCAATCCTTCGACGACATGTGCGTTCGTTCTCAGCAGTGTTTGCGGT TGCCGTGCTATTCTACGAACCCTATTCTACGGCCTCGTGGCTGCAAAGGA GACCTGTTGTGGCTGTTTCTTTTTTTGTCCCTCGTCGGATTCGGCACCAA TGCGTGTTCGTGTCTTCTTGCGTGTTCTTCTGTTCTCGCTAGTTATGCAT ACCTCTTTCTAGGTGTGTCTATTTCCAGCATGACGTCGGCAAAACGTGTG GCACCGTCTTGACCGAATGCAGTACCCCTCCACCCCGTCCTCTGACGAAG TGGTCCCGCGCCTTTCTCTCTCTCTCTCTCTCTCGCGCGCGCGCGCTCTC TCTCTCGCTCATGTTTCCTGCTTCGTCCTATGCATACATGGCATCGCTGT TGCTGTCTCTCCGGCGACAGGACTTTCGTTTACCGACACCGCGGCGGGAA AAGAGGCGTGCCTTTGAAAAACGACGAGGTGTGTCATTCTCTCTCGCACA CACACTTGTTTTTCGGTTGCCACTTTCGAGACATTCGGGAGGGAGTTGTT TGGGGCGGGATGGACATGTCTTGGAGACACGGCTTCAAGGTGGTCACTCG TAGTGAAAAACATACCACATACACAAGACCTTCTTTGGAGCGGTCCATAG ATCGAATGAACCACGAATGCACTCCACAATGTGCCACGCACAGACAGATG AAGTACACAAGCCAGCCTATTGTCGGCGCGATCACTCAAAAAGAACGTTT GCGTTGTTGAACGTGTTGGTGTCGATTGGTCGAGAAAGCTTCGTTCCCCG TACCCCTACGCACGTTTTGGGCCGGCATGCCGAACATACGCGTCCTGTCG GGTACAGGTGGCCATCCTCAGTCTTAAGTCTACGTTCGAGTGCATGCGAG TGTCGGGGCCCCGGCGTATCTCGTCTGGGGGGGCGGGGGAGGGGGGGAGT GAATCGGCGACTGCACCTGACTTTCGCGTCGCCGGGGGGTGGTTGTTAGG TTTTCTACACGTGTCTGTCTCGTGTTTGTCGGAGGAAACGCGATGAGTGA CCACCACCCTTGGGAACTCGTGCACCGTACGCGACCCTTTGGGCAGCAGC TGTTGAGGAGATGTCGTTCATTCTTCACTCTTGTGGGGCTGATACCCCGG TGATCTGGTGGCCATCAGAACATCCTCCTGTTTTGCCTGCATTGTTTATG CTCTTGAGGGTTGTCTCTGCCGTCGGAGGCGGCGTCGTCGCTGTGGTTGA TAACGCCGTCGTTCCGCTCTTGTCATTTGCCAGCCATTCAGTCGTTCTGC CTTGTGAGCGCACCGTACACTTATCTTTCTCGCTCTAGCTCTCGCTCTCG TTCATCTGTCCATCTGTCTCCATGTACAACACAACCAACGAGACAGATCA CCCTAGACACTCAAGACCCCGCCGAAAAGCTTGCGTACTCGTGCTCCCTG GCGCAGTCCGCCAAGCTGTTTGTGTTCGAGGAGCGGCTGGACAACATCAT TGAGACCACCGCCAAGTACCCGCAAGTCCTGGCCGCCACGGGAAAGATTC CGCTGACAGAAGTTCAAATAGGGTGAATCAAATCGTGGGGGGGGGGTTGG CATCGGCCGCGCTTACCGGCTGACCAATGGAAGGACGTCGGTCGTGTGGC ACAAGTTAAAATACGCGAACATGTGTGGCTGGTTATTCTAGATTTTTGAG TGTTTTGCTTGTTCTATGTAGCGGTGCGTGACGTACCCACCTACTTATTT ATTTGTTTTTTTGGTGGTTTTTCAGTGACTGCATCGATACGTGACACTGG ATTCCGTGTTTGTATGTTTTTTTCTATTTTGAGGCGTAGAGGGAAGAGAA TGCTGAACTCTTCTCGCATTGAGAATCGATGGAAACATGCCGAAGGAGGG GAGGGTAGAAAGGGGTCCTTCTGTGTGACCACGAGTTGGAGTAAACGGCA CTACAAGTTTTGTGAGCGCTGATTTGAATTGAGAACAATAAAAAAAAGAA ATTCAATCGGATCGTCTCGATTTTCTTTTTGTCACAGTCATCTCGCATTC GCTGGTTGTGATGAAGGGGTCCAGTGGATCGAGTCATGATTCGAGGAATA TCGTGAAAACCACGGGCGCAACGTAGACATTTGAGACTTGTCGTCCTCCC CGCCCGTCCTTGCCGCTCCCAATGCCGATGCAATAACAGGCGGTTGGTTG GACGAGTGCTCTGCGAACAAAATGAGGTCAACTTACACTCCGACATCCTG GTAAGTACCCTATCGTCACCCTTTCCAAGAAGCTAGTATCCAACACTCTT AGCACCCGGAAAGCGTCTCTTTGGCACGGACCCTTGGTTGAGTGCTACCT ACTTTGGGTTGTAGATTCTTAAACGGAACCCAGGAGATGGTGTCCTTTCC CTCCCCCCCCTCCCCCCAATACCCTTTCCTTCCGGGTTTTGGCTCGCGAG GATCTACGGCCTGACGACTGTTCCCGTGAAATAGATTTTGAGTACCTCTT GCCCCCCCCCTCTCGCCTGCATTATGTAGGACACGCCTGAGTATTTCTGG GAGGAGGACGCTTGGGAGCCAGCGTATGAGGCGCTGTGCGCCTACCTCGA CATTCCACTGAGGGTGGACAACCTCAACAAGAGGCTGGTGAGGATTGTAG TCTATTCGTGTGACATGGACGAGTGAGGGCGACTGGGGAGAGAGTACAGC AACCACGCTTGTGGCGTCCGCCTGTCGCCTTCGTCGGTGACGTGAGAAAA CCAACCAACCAACCAACCAAAGGCGCGCGCCTGTGTCGTTGGGTTTTTCT ATCGTGTTTTTATTCCCGGTTAGTGTGCTCGCGAACTTGGCCTGCTTCTT CTCTCCTTCTCTTCCTCTCTTCCTCTCTCCCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTACGGGTTGTGAGTTTCTGGGTCTCTCGACCGCTGTT TTTTTCTGTCTCGTTGAAACCACGCCATGCCTCGTTTCGCTGTCTCCCTC CACCTTTCCTTGCCCATGTCATTGCTTTGGTCTGTCGGCTGCACGCGTTT TTTTTTTCCCTACACTTTCCACTGTTGGTCTCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCTCCCCCCACGCCCCCGCCCCCCACCACCACNNNNNN NNNNTTCGCTGTCTCCTTCCTCCTTTCCTTTCCCCTGTCTTTTTTTTTTT CTGTCGGCTGCCCGCGTTTTTTTTTTCCCTACCCTTTCCCCTGTTGGTCC CCCCCCCCCGCCCCCGCTGTCTCTCTTCCGACGGCAACGACGACGCACAA CAACATCGCAGAGCATACTGAGGGAGCTGCTGGACGTTCTCTCGACCCAG AGCACGAACGCGCACGCGACGCGCCTGGAGGTGATCATCATCTACCTCAT CTTCGTGGAGGTGGCCATCGAGCTGGTCTGGAACGTGATCATCAAGGACG TGCTTCGCCTCGTGGGGGGCTCCGACAGGGGCTAAAAGAGTAAATAGCGT AGATACCGACGATCGGAGGCCGTGTGCCTTTCCGCGGGATGCGTTGGGAG AAAGAAAAACCCTGCTGAGGTTGGTGCGTGTGGTTGTTTGTTGCTATGTA CGCGTGTGCGTGATTAGTGTTCAAACTACACCGGTCAAGCAAAACACCTC CAAAGGCCATGATCTGGAATCCCGTGAGGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTTTGTGTGGCTTTTTTTTTCTGTTGTTCTCGTGGACCTCGCTA ATCGGGCGACCAATCAGAGCGCTTCTGTCAGCGTAGAAGATAAGGAAGGA CCCAAGAGGCCTCCGACAAGGGGGCGCCGCGGAGGAGAATGCGCGGCAGC CTCTAGCCTCTCACCTCTAGCGTCCGTATTGAAAGAGTGCTTGTAAAGCA AGAGGACACACCGCAAGTTAGTGCAATGCCTCCTGTGATACCTGAATCAA TCTCGTGGCGATGTACTTGTTTGCCAGTGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5956:839..5768-

>mRNA_Ecto-sp13_S_contig5956.16512.1 ID=mRNA_Ecto-sp13_S_contig5956.16512.1|Name=mRNA_Ecto-sp13_S_contig5956.16512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5956:839..5768- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTCGCTCTACATCGACGTGATTCACTCGACCACCGACCTTCGGGG
GGGGCTCCGGAAGGCTCGCGAGCTCGAACGGCCCGCTTGGGAAGCGGACG
AGTACGCCGACGAGGAGGACGGCTACAGGGACGGCTACGACCAAGAGCAA
GAGGACGCGGACGGCACCGGTGTCGGCGGCGGCGGCGGCGGCGGCGAGGA
CGGAGGCGATGATGCCGTCACCCGCCACAAGGACATCATGTTCTTCCCGT
ACGGCGCGGTGGTGTTCTGGGGGTGCTCGGAGGCCGAGGAGAAGGAAGTC
CTGTCCAACCTCACCCGCTTCATGGTGGGGAAAGTGTCAGAGACGGAGCT
CGCCCAATCCTTCGACGACATGACTTTCGTTTACCGACACCGCGGCGGGA
AAAGAGGCGTGCCTTTGAAAAACGACGAGATCACCCTAGACACTCAAGAC
CCCGCCGAAAAGCTTGCGTACTCGTGCTCCCTGGCGCAGTCCGCCAAGCT
GTTTGTGTTCGAGGAGCGGCTGGACAACATCATTGAGACCACCGCCAAGT
ACCCGCAAGTCCTGGCCGCCACGGGAAAGATTCCGCTGACAGAAGTTCAA
ATAGGGCGGTTGGTTGGACGAGTGCTCTGCGAACAAAATGAGGTCAACTT
ACACTCCGACATCCTGGACACGCCTGAGTATTTCTGGGAGGAGGACGCTT
GGGAGCCAGCGTATGAGGCGCTGTGCGCCTACCTCGACATTCCACTGAGG
GTGGACAACCTCAACAAGAGGCTGAGCATACTGAGGGAGCTGCTGGACGT
TCTCTCGACCCAGAGCACGAACGCGCACGCGACGCGCCTGGAGGTGATCA
TCATCTACCTCATCTTCGTGGAGGTGGCCATCGAGCTGGTCTGGAACGTG
ATCATCAAGGACGTGCTTCGCCTCGTGGGGGGCTCCGACAGGGGCTAA
back to top