mRNA_Ecto-sp13_S_contig5956.16513.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5956.16513.1
Unique NamemRNA_Ecto-sp13_S_contig5956.16513.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5956.16513.1 vs. uniprot
Match: A0A6H5JX01_9PHAE (DUF155 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX01_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.940e-47
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = -3 
Query:    2 ATWAWATPPAPRPLGGIGGASFSRLQRGDYRSEGEQPSTERNGSRRRQRPLGEAARQDSFRTNRMPKRGGRKRLRRNLDRPAAARRRRIKIRVS 283
            ATWAWA PPAPRPLGGIGGAS+SRLQRGDYRSEGEQPSTERNGSRRRQ PLGEAARQDSFRTNRMPKRGGRKRLRRNLDRPAAARRRRIKIRVS
Sbjct:   62 ATWAWAIPPAPRPLGGIGGASYSRLQRGDYRSEGEQPSTERNGSRRRQHPLGEAARQDSFRTNRMPKRGGRKRLRRNLDRPAAARRRRIKIRVS 155
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BLAST of mRNA_Ecto-sp13_S_contig5956.16513.1 vs. uniprot
Match: D8LTX9_ECTSI (DUF155 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTX9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.020e-5
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -3 
Query:    2 MPKRGGRKRLRRNLDRPAAARRRRIKIRVS 91
            MPKRGGRKRLRRNLDRPAAARRRRIKIRVS
Sbjct:    1 MPKRGGRKRLRRNLDRPAAARRRRIKIRVS 30
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5956.16513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JX01_9PHAE1.940e-4796.81DUF155 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LTX9_ECTSI1.020e-5100.00DUF155 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5956contigEcto-sp13_S_contig5956:6095..6563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size471
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463827.6398046-CDS-Ecto-sp13_S_contig5956:6094..65621681463827.6398046-CDS-Ecto-sp13_S_contig5956:6094..6562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5956 6095..6562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5956.16513.1prot_Ecto-sp13_S_contig5956.16513.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5956 6095..6562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5956.16513.1

>prot_Ecto-sp13_S_contig5956.16513.1 ID=prot_Ecto-sp13_S_contig5956.16513.1|Name=mRNA_Ecto-sp13_S_contig5956.16513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
RTRGSLSDGGEPRRAGPGCAGGACDPRAWACGSCGTSPVGRPPPGGAADG
GSRYARWKAARLRCGSPPSAAGKTRHRRCRLAGAVPAGSPMPMSLLLSYL
RQRLLYLSSVAAAVGRRRAAVGRPRGRCVCRRLGASRSRTSRSLPLPRPP
LREEAC
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mRNA from alignment at Ecto-sp13_S_contig5956:6095..6563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5956.16513.1 ID=mRNA_Ecto-sp13_S_contig5956.16513.1|Name=mRNA_Ecto-sp13_S_contig5956.16513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=469bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5956:6095..6563+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACACGCGGATCTTTATCCGACGGCGGCGAGCCGCGGCGGGCCGGTCC
AGGTTGCGCCGGAGGCGCTTGCGACCCCCGCGCTTGGGCATGCGGTTCGT
GCGGAACGAGTCCTGTCGGGCGGCCTCCCCCAGGGGGCGCTGCCGACGGC
GGCTCCCGTTACGCTCGGTGGAAGGCTGCTCGCCTTCGCTGCGGTAGTCC
CCCCTCTGCAGCCGGGAAAACGAGGCACCGCCGATGCCGCCTAGCGGGCG
CGGTGCCGGCGGGGTCGCCCATGCCCATGTCGCTGCTGCTGAGCTATTTG
CGGCAGCGGCTCCTCTACTTGAGCTCGGTTGCTGCTGCCGTCGGCCGCCG
CCGAGCCGCCGTTGGTCGTCCCCGCGGGCGGTGCGTTTGCCGCCGGTTAG
GGGCGAGCCGATCGCGGACGAGTCGGAGTCTTCCTCTTCCTCGCCCGCCT
CTACGAGAAGAGGCGTGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5956:6095..6563+

>mRNA_Ecto-sp13_S_contig5956.16513.1 ID=mRNA_Ecto-sp13_S_contig5956.16513.1|Name=mRNA_Ecto-sp13_S_contig5956.16513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5956:6095..6563+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACACGCGGATCTTTATCCGACGGCGGCGAGCCGCGGCGGGCCGGTCC
AGGTTGCGCCGGAGGCGCTTGCGACCCCCGCGCTTGGGCATGCGGTTCGT
GCGGAACGAGTCCTGTCGGGCGGCCTCCCCCAGGGGGCGCTGCCGACGGC
GGCTCCCGTTACGCTCGGTGGAAGGCTGCTCGCCTTCGCTGCGGTAGTCC
CCCCTCTGCAGCCGGGAAAACGAGGCACCGCCGATGCCGCCTAGCGGGCG
CGGTGCCGGCGGGGTCGCCCATGCCCATGTCGCTGCTGCTGAGCTATTTG
CGGCAGCGGCTCCTCTACTTGAGCTCGGTTGCTGCTGCCGTCGGCCGCCG
CCGAGCCGCCGTTGGTCGTCCCCGCGGGCGGTGCGTTTGCCGCCGGTTAG
GGGCGAGCCGATCGCGGACGAGTCGGAGTCTTCCTCTTCCTCGCCCGCCT
CTACGAGAAGAGGCGTGC
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