mRNA_Ecto-sp13_S_contig59549.16509.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59549.16509.1
Unique NamemRNA_Ecto-sp13_S_contig59549.16509.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Match: A0A6H5K0B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B6_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.470e-35
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:   16 ALSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQVTRADI 231
            ALS HPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALC SNRYQVTR  I
Sbjct:  152 ALSGHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCGSNRYQVTREAI 223
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BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Match: D8LIA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA8_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.240e-35
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:   16 ALSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQVTRADI 231
            ALS HPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALC SNRYQVTR  I
Sbjct:  355 ALSGHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCGSNRYQVTREAI 426
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BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Match: A0A0P1ADX8_PLAHL (Low quality protein: nitrogen permease regulator 3-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADX8_PLAHL)

HSP 1 Score: 67.4 bits (163), Expect = 2.650e-11
Identity = 31/80 (38.75%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 TNHQSALSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV-TRADIDL 237
            T+  S LS+ P D + Q++ ++E  +P K+ +++A+ +++ + Q+ RLA HLV+WG GR++DAL   N YQV  +AD+ +
Sbjct:  346 TDKNSILSKLPIDHARQLRLLVETVNPLKSFQDIAHDTDMPIHQIFRLAAHLVYWGYGRIVDALTLYNIYQVHAKADLHI 425
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BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Match: H3HC47_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HC47_PHYRM)

HSP 1 Score: 64.3 bits (155), Expect = 3.200e-10
Identity = 30/76 (39.47%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:   13 SALSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQVT-RADIDL 237
            S L++ PAD + Q++ ++E  +P K+ ++LA  + + + Q+ RLA HLV+WG GR++DA+   N YQV  +AD+ +
Sbjct:  343 SILNKLPADHARQLRDLVEAVNPLKSFQDLALETGVPIHQVFRLAAHLVYWGFGRIVDAITLYNIYQVNAKADLHI 418
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BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Match: A0A3M6VKD0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKD0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.020e-10
Identity = 28/80 (35.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 TNHQSALSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV-TRADIDL 237
            ++  + L++ PAD + Q++ ++E  +P K+ +++A  + + + Q+ RL+ HLV+WG GR++DA+   N YQV T+AD+ +
Sbjct:  358 SDKSNILNKLPADHARQLRDLVEAVNPLKSFQDIALETGVPIHQVFRLSAHLVYWGFGRIVDAITLYNIYQVNTKADLHI 437
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BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Match: A0A6A4CTC0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4CTC0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 8.310e-10
Identity = 29/80 (36.25%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 TNHQSALSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV-TRADIDL 237
            T     L++ PAD + Q++ ++E  +P K+ ++L   + + + Q+ RLA HLV+WG GR++DA+   N YQV ++AD+ +
Sbjct:  554 TGKDDILNKLPADHARQLRDLVEAVNPLKSFQDLVLEAGVPIHQVFRLAAHLVYWGFGRIVDAITLYNIYQVNSKADLHI 633
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BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Match: A0A2P4XQE6_9STRA (UPF0171 like protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQE6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.510e-9
Identity = 28/72 (38.89%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   19 LSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV-TRADI 231
            L++ PAD + Q++ ++E  +P K+ +++A  + + + Q+ RLA HLV+WG GR++DA+   N YQV ++AD+
Sbjct:  366 LNKLPADHARQLRDLVETVNPLKSFQDIALEAGVPIHQVFRLAAHLVYWGFGRIVDAITLYNIYQVNSKADL 437
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BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Match: M4BTZ0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTZ0_HYAAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.920e-9
Identity = 25/72 (34.72%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 TNHQSALSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV 216
            ++  + L++ PAD + Q++ ++E  +P K+ +++A  + + + Q+ RL+ HLV+WG GR++DA+   N YQV
Sbjct:  364 SDKSAILNKLPADHARQLRDLVEAVNPLKSFQDIALETSVPIHQVFRLSAHLVYWGYGRIVDAITLYNIYQV 435
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BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Match: UPI0014256D99 (GATOR complex protein NPRL3-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014256D99)

HSP 1 Score: 60.5 bits (145), Expect = 7.280e-9
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   13 SALSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRY 210
            S +   P D SP + R+I++A P K+L++L+  S+I LSQ+ +L  HLV+WG   VI  LC +N Y
Sbjct:  280 SLIMSLPPDCSPSLVRIIKLATPIKSLQQLSQDSDIALSQVFQLVGHLVYWGKATVIFPLCETNIY 345
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BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Match: A0A484EBP1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBP1_BRELC)

HSP 1 Score: 60.5 bits (145), Expect = 7.310e-9
Identity = 26/67 (38.81%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   19 LSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQVT 219
            L + P D + Q++ +++  +P K+ +++A  S + + Q+ RLA HLV+WG GR++DA+   N YQVT
Sbjct:  348 LQKLPVDHARQLEIVVKTVNPLKSFQDIALESSVPIHQVFRLAAHLVYWGFGRIVDAITLYNVYQVT 414
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59549.16509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K0B6_9PHAE1.470e-3594.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIA8_ECTSI2.240e-3594.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0P1ADX8_PLAHL2.650e-1138.75Low quality protein: nitrogen permease regulator 3... [more]
H3HC47_PHYRM3.200e-1039.47Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3M6VKD0_9STRA6.020e-1035.00Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A6A4CTC0_9STRA8.310e-1036.25Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A2P4XQE6_9STRA1.510e-938.89UPF0171 like protein (Fragment) n=1 Tax=Phytophtho... [more]
M4BTZ0_HYAAE3.920e-934.72Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
UPI0014256D997.280e-943.94GATOR complex protein NPRL3-like n=1 Tax=Anneissia... [more]
A0A484EBP1_BRELC7.310e-938.81Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59549contigEcto-sp13_S_contig59549:168..685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score137.5
Seed ortholog evalue2.7e-30
Seed eggNOG ortholog2880.D8LIA8
Preferred nameNPRL3
Model size237
KEGG koko:K20406
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001568,GO:0001944,GO:0003006,GO:0003205,GO:0003231,GO:0003279,GO:0003281,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005773,GO:0005774,GO:0005776,GO:0006950,GO:0006995,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007507,GO:0008150,GO:0008361,GO:0009267,GO:0009605,GO:0009653,GO:0009888,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010507,GO:0010508,GO:0010646,GO:0010648,GO:0010896,GO:0010898,GO:0014706,GO:0016020,GO:0016043,GO:0016239,GO:0016241,GO:0016242,GO:0019216,GO:0019222,GO:0019898,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0031090,GO:0031312,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0031929,GO:0032006,GO:0032007,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035239,GO:0035295,GO:0035556,GO:0035859,GO:0035904,GO:0035909,GO:0038202,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043562,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044754,GO:0045792,GO:0045834,GO:0048468,GO:0048477,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048731,GO:0048738,GO:0048844,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051128,GO:0051704,GO:0051716,GO:0060021,GO:0060537,GO:0060840,GO:0061700,GO:0065007,GO:0065008,GO:0071496,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0090066,GO:0090207,GO:0090208,GO:0097042,GO:0098588,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1904262,GO:1904766,GO:1990130,GO:1990928,GO:2000785
Exons2
EggNOG free text desc.TORC1 signaling
EggNOG OGsKOG3830@1,KOG3830@2759
Cds size237
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463827.457105-CDS-Ecto-sp13_S_contig59549:167..2721681463827.457105-CDS-Ecto-sp13_S_contig59549:167..272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59549 168..272 -
1681463827.4684362-CDS-Ecto-sp13_S_contig59549:553..6851681463827.4684362-CDS-Ecto-sp13_S_contig59549:553..685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59549 554..685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59549.16509.1prot_Ecto-sp13_S_contig59549.16509.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59549 168..685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59549.16509.1

>prot_Ecto-sp13_S_contig59549.16509.1 ID=prot_Ecto-sp13_S_contig59549.16509.1|Name=mRNA_Ecto-sp13_S_contig59549.16509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
TNHQSALSEHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLAR
HLVFWGSGRVIDALCSSNRYQVTRADIDL
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mRNA from alignment at Ecto-sp13_S_contig59549:168..685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59549.16509.1 ID=mRNA_Ecto-sp13_S_contig59549.16509.1|Name=mRNA_Ecto-sp13_S_contig59549.16509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59549:168..685- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAATCACCAAAGCGCTTTGTCGGAACACCCGGCAGACGGTTCTCCCCA
GATCAAGCGCATGATCGAAATCGCGGACCCCCACAAGACGCTGGAAGAGC
TGGCCTACACGAGCGAGATCGAGCTGTCTCAGGTGTGCGACGGATTTTCC
TTCTCGGCAGGGTTGTTGCTGCTCTTGCTTGTGTGTTGTGTGCCAGAGAC
CCACCAACTTAGTAAAATACTTAGGACGAGCCGATCAAATCCTGTTGCTA
CCCTTTACCATACAGCAGTAGAATAGTTCCCTACATTTACGCATAATTTC
CTACGTTTACACCCGCCCGCAAGACAAATTCCGAAGACGCGACGACAAAA
AAAATTATTTTTCCAAAATTGGCAGTGGTTCATCACGCGGCAACCGATTT
CCTTGGCGTGCAGATGCTTCGTTTGGCACGGCACCTTGTGTTCTGGGGGT
CCGGGCGGGTGATCGACGCTCTCTGCAGCAGTAATCGGTACCAGGTGACT
CGCGCTGATATCGACTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59549:168..685-

>mRNA_Ecto-sp13_S_contig59549.16509.1 ID=mRNA_Ecto-sp13_S_contig59549.16509.1|Name=mRNA_Ecto-sp13_S_contig59549.16509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59549:168..685- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAATCACCAAAGCGCTTTGTCGGAACACCCGGCAGACGGTTCTCCCCA
GATCAAGCGCATGATCGAAATCGCGGACCCCCACAAGACGCTGGAAGAGC
TGGCCTACACGAGCGAGATCGAGCTGTCTCAGATGCTTCGTTTGGCACGG
CACCTTGTGTTCTGGGGGTCCGGGCGGGTGATCGACGCTCTCTGCAGCAG
TAATCGGTACCAGGTGACTCGCGCTGATATCGACTTG
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