prot_Ecto-sp13_S_contig59509.16503.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig59509.16503.1
Unique Nameprot_Ecto-sp13_S_contig59509.16503.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length84
Homology
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A6H5KSN1_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSN1_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.210e-40
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0
Query:    7 LSPRQRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 79
            +    RYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK
Sbjct:   70 MEVEDRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 142          
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S2G621_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G621_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.360e-33
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 0
Query:   11 QRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKVLVLV 84
            +RY+GRGGVFESVD G  GGP +SVEGWILFVRNVHEEAQEDDI+DKFSE G V+N+HVNLDRRTGFVK   LV
Sbjct:   54 ERYDGRGGVFESVDAGGEGGPLQSVEGWILFVRNVHEEAQEDDILDKFSESGDVRNIHVNLDRRTGFVKGYALV 127          
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S3GV69_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV69_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.480e-31
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 0
Query:   12 RYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKVLVLV 84
            RY GRGGVFE++  GS  GP +S+EGWI+FV NVH+EAQEDDI+DKFSEYG VKN+HVNLDRRTGFVK   LV
Sbjct:   54 RYNGRGGVFENIQRGSGAGPLQSIEGWIVFVTNVHQEAQEDDILDKFSEYGTVKNIHVNLDRRTGFVKGYALV 126          
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S2DBP5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBP5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.860e-29
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0
Query:    7 LSPRQRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKVLVLV 84
            +    RY+GRGG+FESV+     GP  SVEGWILF+R VHEEAQEDDI+DKF E G V+N+HVNLDRRTGFVK   LV
Sbjct:   40 MDTEDRYDGRGGIFESVETADGVGPAESVEGWILFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALV 117          
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S2WG46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG46_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.290e-28
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 0
Query:    2 GPSCCLSPRQRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 79
            G    +   +RYEGRGGVF+S+  G   GP +SVEGWILFVR VHEEAQEDDI+DKF+++G V+N+ VNLDRRTGFVK
Sbjct:   42 GHVAAMDAEERYEGRGGVFDSI-AGDGPGPAKSVEGWILFVRGVHEEAQEDDILDKFADFGEVRNIAVNLDRRTGFVK 118          
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S2S198_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S198_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.920e-28
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 0
Query:    2 GPSCCLSPRQRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 79
            G    +   +RYEGRGGVF+S+  G   GP +SVEGWILFVR VHEEAQEDDI+DKF+++G V+N+ VNLDRRTGFVK
Sbjct:   42 GHVAAMDAEERYEGRGGVFDSI-AGDGPGPAKSVEGWILFVRGVHEEAQEDDILDKFADFGEVRNIAVNLDRRTGFVK 118          
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A0G4H5U6_9ALVE (RRM domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H5U6_9ALVE)

HSP 1 Score: 101 bits (251), Expect = 1.550e-25
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 0
Query:   11 QRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 79
            +RYEG+GGVFES+   ++G   +SVEGWI+ VR +HEEAQEDDI D FS YG +KNLH+NLDRRTGFVK
Sbjct:   39 ERYEGQGGVFESLSHDASGTAAKSVEGWIVIVRGLHEEAQEDDIHDSFSGYGEIKNLHLNLDRRTGFVK 107          
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A6S7ZUS5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S7ZUS5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.290e-25
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 0
Query:   14 EGRGG-VFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 79
            EGRGG  FES+D  S+ GP +SVEGWILFV NVHEEAQEDDI+D F E+G VKN+HVNLDRRTGFVK
Sbjct:   41 EGRGGGYFESID-DSSYGPVKSVEGWILFVSNVHEEAQEDDILDTFGEFGQVKNIHVNLDRRTGFVK 106          
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A1I7XVI5_9BILA (RNA-binding protein 8A n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7XVI5_9BILA)

HSP 1 Score: 99.8 bits (247), Expect = 5.780e-25
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 0
Query:   20 FESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKVLVLV 84
            +ESVD   A GPQRSVEGWI+FV NVHEEAQE+DI DKFSE+G +KN+H+NLDRRTGF+K   LV
Sbjct:   43 YESVDDSGASGPQRSVEGWIVFVTNVHEEAQEEDIYDKFSEFGEIKNVHLNLDRRTGFLKGYALV 107          
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S3JPB2_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPB2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.750e-25
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 0
Query:   14 EGRGG-VFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 79
            EGRGG  FES+D  S+ GP +SVEGWILFV NVHEEAQEDDI+D F E+G VKN+HVNLDRRTGFVK
Sbjct:   41 EGRGGGYFESID-DSSYGPVKSVEGWILFVSNVHEEAQEDDILDTFGEFGQVKNIHVNLDRRTGFVK 106          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSN1_9PHAE1.210e-4093.15RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2G621_9STRA1.360e-3379.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3GV69_9STRA3.480e-3173.97Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2DBP5_9STRA4.860e-2966.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WG46_9STRA2.290e-2865.38Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2S198_9STRA6.920e-2865.38Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A0G4H5U6_9ALVE1.550e-2568.12RRM domain-containing protein n=1 Tax=Chromera vel... [more]
A0A6S7ZUS5_9STRA4.290e-2576.12Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1I7XVI5_9BILA5.780e-2572.31RNA-binding protein 8A n=1 Tax=Steinernema glaseri... [more]
A0A7S3JPB2_9STRA7.750e-2576.12Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 9..84
e-value: 1.7E-12
score: 49.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 40..79
e-value: 6.2E-7
score: 29.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 38..80
score: 8.535
NoneNo IPR availablePANTHERPTHR45894FAMILY NOT NAMEDcoord: 17..84
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59509contigEcto-sp13_S_contig59509:548..799 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59509.16503.1mRNA_Ecto-sp13_S_contig59509.16503.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig59509 548..799 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig59509.16503.1 ID=prot_Ecto-sp13_S_contig59509.16503.1|Name=mRNA_Ecto-sp13_S_contig59509.16503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MGPSCCLSPRQRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQ
EDDIMDKFSEYGAVKNLHVNLDRRTGFVKVLVLV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf