mRNA_Ecto-sp13_S_contig59509.16503.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59509.16503.1
Unique NamemRNA_Ecto-sp13_S_contig59509.16503.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A6H5KSN1_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSN1_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.210e-40
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:   19 LSPRQRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 237
            +    RYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK
Sbjct:   70 MEVEDRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S2G621_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G621_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.360e-33
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:   31 QRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKVLVLV 252
            +RY+GRGGVFESVD G  GGP +SVEGWILFVRNVHEEAQEDDI+DKFSE G V+N+HVNLDRRTGFVK   LV
Sbjct:   54 ERYDGRGGVFESVDAGGEGGPLQSVEGWILFVRNVHEEAQEDDILDKFSESGDVRNIHVNLDRRTGFVKGYALV 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S3GV69_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV69_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.480e-31
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   34 RYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKVLVLV 252
            RY GRGGVFE++  GS  GP +S+EGWI+FV NVH+EAQEDDI+DKFSEYG VKN+HVNLDRRTGFVK   LV
Sbjct:   54 RYNGRGGVFENIQRGSGAGPLQSIEGWIVFVTNVHQEAQEDDILDKFSEYGTVKNIHVNLDRRTGFVKGYALV 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S2DBP5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBP5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.860e-29
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   19 LSPRQRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKVLVLV 252
            +    RY+GRGG+FESV+     GP  SVEGWILF+R VHEEAQEDDI+DKF E G V+N+HVNLDRRTGFVK   LV
Sbjct:   40 MDTEDRYDGRGGIFESVETADGVGPAESVEGWILFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALV 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S2WG46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG46_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.290e-28
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    4 GPSCCLSPRQRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 237
            G    +   +RYEGRGGVF+S+  G   GP +SVEGWILFVR VHEEAQEDDI+DKF+++G V+N+ VNLDRRTGFVK
Sbjct:   42 GHVAAMDAEERYEGRGGVFDSI-AGDGPGPAKSVEGWILFVRGVHEEAQEDDILDKFADFGEVRNIAVNLDRRTGFVK 118
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S2S198_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S198_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.920e-28
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    4 GPSCCLSPRQRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 237
            G    +   +RYEGRGGVF+S+  G   GP +SVEGWILFVR VHEEAQEDDI+DKF+++G V+N+ VNLDRRTGFVK
Sbjct:   42 GHVAAMDAEERYEGRGGVFDSI-AGDGPGPAKSVEGWILFVRGVHEEAQEDDILDKFADFGEVRNIAVNLDRRTGFVK 118
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A0G4H5U6_9ALVE (RRM domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H5U6_9ALVE)

HSP 1 Score: 101 bits (251), Expect = 1.550e-25
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   31 QRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 237
            +RYEG+GGVFES+   ++G   +SVEGWI+ VR +HEEAQEDDI D FS YG +KNLH+NLDRRTGFVK
Sbjct:   39 ERYEGQGGVFESLSHDASGTAAKSVEGWIVIVRGLHEEAQEDDIHDSFSGYGEIKNLHLNLDRRTGFVK 107
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A6S7ZUS5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S7ZUS5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.290e-25
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   40 EGRGG-VFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 237
            EGRGG  FES+D  S+ GP +SVEGWILFV NVHEEAQEDDI+D F E+G VKN+HVNLDRRTGFVK
Sbjct:   41 EGRGGGYFESID-DSSYGPVKSVEGWILFVSNVHEEAQEDDILDTFGEFGQVKNIHVNLDRRTGFVK 106
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A1I7XVI5_9BILA (RNA-binding protein 8A n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7XVI5_9BILA)

HSP 1 Score: 99.8 bits (247), Expect = 5.780e-25
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   58 FESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKVLVLV 252
            +ESVD   A GPQRSVEGWI+FV NVHEEAQE+DI DKFSE+G +KN+H+NLDRRTGF+K   LV
Sbjct:   43 YESVDDSGASGPQRSVEGWIVFVTNVHEEAQEEDIYDKFSEFGEIKNVHLNLDRRTGFLKGYALV 107
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Match: A0A7S3JPB2_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPB2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.750e-25
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   40 EGRGG-VFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVK 237
            EGRGG  FES+D  S+ GP +SVEGWILFV NVHEEAQEDDI+D F E+G VKN+HVNLDRRTGFVK
Sbjct:   41 EGRGGGYFESID-DSSYGPVKSVEGWILFVSNVHEEAQEDDILDTFGEFGQVKNIHVNLDRRTGFVK 106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59509.16503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSN1_9PHAE1.210e-4093.15RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2G621_9STRA1.360e-3379.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3GV69_9STRA3.480e-3173.97Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2DBP5_9STRA4.860e-2966.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WG46_9STRA2.290e-2865.38Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2S198_9STRA6.920e-2865.38Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A0G4H5U6_9ALVE1.550e-2568.12RRM domain-containing protein n=1 Tax=Chromera vel... [more]
A0A6S7ZUS5_9STRA4.290e-2576.12Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1I7XVI5_9BILA5.780e-2572.31RNA-binding protein 8A n=1 Tax=Steinernema glaseri... [more]
A0A7S3JPB2_9STRA7.750e-2576.12Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59509contigEcto-sp13_S_contig59509:548..799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score142.1
Seed ortholog evalue1.2e-31
Seed eggNOG ortholog2880.D7FPG0
Preferred nameRBM8A
Model size252
KEGG koko:K03037,ko:K12876
KEGG Pathwayko03013,ko03015,ko03040,ko03050,ko05169,map03013,map03015,map03040,map03050,map05169
KEGG ModuleM00341,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000184,GO:0000226,GO:0000335,GO:0000337,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000578,GO:0000956,GO:0001709,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007294,GO:0007308,GO:0007309,GO:0007310,GO:0007314,GO:0007315,GO:0007316,GO:0007317,GO:0007350,GO:0007351,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0008298,GO:0008358,GO:0008380,GO:0008595,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009892,GO:0009893,GO:0009948,GO:0009950,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010467,GO:0010468,GO:0010528,GO:0010529,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019094,GO:0019219,GO:0019222,GO:0019439,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030425,GO:0030706,GO:0030716,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035282,GO:0036477,GO:0038127,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044703,GO:0045165,GO:0045184,GO:0045292,GO:0045451,GO:0045595,GO:0045910,GO:0045934,GO:0045995,GO:0046483,GO:0046595,GO:0046700,GO:0046907,GO:0048024,GO:0048468,GO:0048469,GO:0048477,GO:0048518,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051053,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051252,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051663,GO:0051704,GO:0051716,GO:0060255,GO:0060281,GO:0060284,GO:0060341,GO:0060810,GO:0060811,GO:0065007,GO:0070013,GO:0070727,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0120025,GO:0120038,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902875,GO:1903311,GO:1903429,GO:1904580,GO:1905879,GO:1990904,GO:2000026,GO:2000241
Exons1
EggNOG free text desc.establishment of pole plasm mRNA localization
EggNOG OGsKOG0130@1,KOG0130@2759
Cds size252
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463826.9268157-CDS-Ecto-sp13_S_contig59509:547..7991681463826.9268157-CDS-Ecto-sp13_S_contig59509:547..799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59509 548..799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59509.16503.1prot_Ecto-sp13_S_contig59509.16503.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59509 548..799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59509.16503.1

>prot_Ecto-sp13_S_contig59509.16503.1 ID=prot_Ecto-sp13_S_contig59509.16503.1|Name=mRNA_Ecto-sp13_S_contig59509.16503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MGPSCCLSPRQRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQ
EDDIMDKFSEYGAVKNLHVNLDRRTGFVKVLVLV
back to top

mRNA from alignment at Ecto-sp13_S_contig59509:548..799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59509.16503.1 ID=mRNA_Ecto-sp13_S_contig59509.16503.1|Name=mRNA_Ecto-sp13_S_contig59509.16503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59509:548..799+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCCTTCTTGCTGTCTCTCGCCGCGACAAAGATACGAGGGTCGAGG
AGGCGTTTTCGAGTCCGTGGACGTTGGCTCAGCCGGCGGCCCACAGCGCA
GCGTCGAGGGCTGGATCCTGTTCGTGCGCAACGTGCACGAGGAGGCTCAG
GAGGACGACATCATGGACAAGTTCTCCGAGTACGGGGCGGTGAAGAACCT
GCACGTCAACCTCGACAGGCGCACGGGTTTCGTCAAGGTGCTGGTGTTGG
TT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59509:548..799+

>mRNA_Ecto-sp13_S_contig59509.16503.1 ID=mRNA_Ecto-sp13_S_contig59509.16503.1|Name=mRNA_Ecto-sp13_S_contig59509.16503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59509:548..799+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCCTTCTTGCTGTCTCTCGCCGCGACAAAGATACGAGGGTCGAGG
AGGCGTTTTCGAGTCCGTGGACGTTGGCTCAGCCGGCGGCCCACAGCGCA
GCGTCGAGGGCTGGATCCTGTTCGTGCGCAACGTGCACGAGGAGGCTCAG
GAGGACGACATCATGGACAAGTTCTCCGAGTACGGGGCGGTGAAGAACCT
GCACGTCAACCTCGACAGGCGCACGGGTTTCGTCAAGGTGCTGGTGTTGG
TT
back to top