prot_Ecto-sp13_S_contig11936.1650.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11936.1650.1
Unique Nameprot_Ecto-sp13_S_contig11936.1650.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length85
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11936.1650.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.680e-41
Identity = 72/83 (86.75%), Postives = 73/83 (87.95%), Query Frame = 0 
Query:    1 MSWCSLKTRIRWATASIRWRLAGRRNTSPQDGPRRPSLKMFLQGSTGVCGVDGRPVVMVRRSPESSTILGRQLSFNCPRYITV 83
            MSWCSL TRIRWATA IRWRL GRRNTS      RPSLK+FLQGSTGVCGVDGRPVVMVRR PESSTILGRQLSFNCPRYITV
Sbjct:  134 MSWCSLTTRIRWATACIRWRLGGRRNTS------RPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILGRQLSFNCPRYITV 210
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BLAST of mRNA_Ecto-sp13_S_contig11936.1650.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 8.730e-36
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 0 
Query:    4 CSLKTRIRWATASIRWRLAGRRNTSPQDGPRRPSLKMFLQGSTGVCGVDGRPVVMVRRSPESSTILGRQL 73
            C LKT IRWATA IRWRLAGRRNT PQDGPRRPSL+MFLQGSTGVCGVDGRPVVMVR  PESSTILGRQL
Sbjct:   61 CVLKTGIRWATAYIRWRLAGRRNTPPQDGPRRPSLRMFLQGSTGVCGVDGRPVVMVRGLPESSTILGRQL 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11936.1650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L574_9PHAE1.680e-4186.75PKD_channel domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JES1_9PHAE8.730e-3690.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11936contigEcto-sp13_S_contig11936:620..1640 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11936.1650.1mRNA_Ecto-sp13_S_contig11936.1650.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11936 584..2053 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11936.1650.1 ID=prot_Ecto-sp13_S_contig11936.1650.1|Name=mRNA_Ecto-sp13_S_contig11936.1650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MSWCSLKTRIRWATASIRWRLAGRRNTSPQDGPRRPSLKMFLQGSTGVCG
VDGRPVVMVRRSPESSTILGRQLSFNCPRYITVG*
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