mRNA_Ecto-sp13_S_contig11936.1650.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11936.1650.1
Unique NamemRNA_Ecto-sp13_S_contig11936.1650.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11936.1650.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.110e-48
Identity = 84/95 (88.42%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:    1 DTIFQSFIAFVGMSWCSLKTRIRWATASIRWRLAGRRNTSPQDGPRRPSLKMFLQGSTGVCGVDGRPVVMVRRSPESSTILGRQLSFNCPRYITV 285
            DTIFQSFIAFVGMSWCSL TRIRWATA IRWRL GRRNTS      RPSLK+FLQGSTGVCGVDGRPVVMVRR PESSTILGRQLSFNCPRYITV
Sbjct:  122 DTIFQSFIAFVGMSWCSLTTRIRWATACIRWRLGGRRNTS------RPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILGRQLSFNCPRYITV 210
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BLAST of mRNA_Ecto-sp13_S_contig11936.1650.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 9.030e-40
Identity = 84/146 (57.53%), Postives = 89/146 (60.96%), Query Frame = 1 
Query:    1 DTIFQSFIAFVGMSW--------------------CSLKTRIRWATASIRWRLAGRRNTSPQDGPRRPSLKMFLQGSTGVCGVDGRPVVMVRRSPESSTILGRQL------SFNCPRYITVG*I**GRETRVDLVRRWHSPDPRRL 360
            DTI  SFIAFVGMSW                    C LKT IRWATA IRWRLAGRRNT PQDGPRRPSL+MFLQGSTGVCGVDGRPVVMVR  PESSTILGRQL      +F  P  +       GR  R  +V  W      R+
Sbjct:   26 DTILPSFIAFVGMSWWVLHSRQTARQPEQILTSVSCVLKTGIRWATAYIRWRLAGRRNTPPQDGPRRPSLRMFLQGSTGVCGVDGRPVVMVRGLPESSTILGRQLPAALIEAFPVPARVA------GRLVR-KIVHEWVFRSDERI 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11936.1650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L574_9PHAE1.110e-4888.42PKD_channel domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JES1_9PHAE9.030e-4057.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11936contigEcto-sp13_S_contig11936:584..2053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size704
Hectar predicted targeting categorymitochondrion
Exons2
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462631.8299832-UTR-Ecto-sp13_S_contig11936:583..6191681462631.8299832-UTR-Ecto-sp13_S_contig11936:583..619Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11936 584..619 +
1681462631.8575773-UTR-Ecto-sp13_S_contig11936:1640..20531681462631.8575773-UTR-Ecto-sp13_S_contig11936:1640..2053Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11936 1641..2053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462631.839927-CDS-Ecto-sp13_S_contig11936:619..6271681462631.839927-CDS-Ecto-sp13_S_contig11936:619..627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11936 620..627 +
1681462631.8488042-CDS-Ecto-sp13_S_contig11936:1393..16401681462631.8488042-CDS-Ecto-sp13_S_contig11936:1393..1640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11936 1394..1640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11936.1650.1prot_Ecto-sp13_S_contig11936.1650.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11936 620..1640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11936.1650.1

>prot_Ecto-sp13_S_contig11936.1650.1 ID=prot_Ecto-sp13_S_contig11936.1650.1|Name=mRNA_Ecto-sp13_S_contig11936.1650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MSWCSLKTRIRWATASIRWRLAGRRNTSPQDGPRRPSLKMFLQGSTGVCG
VDGRPVVMVRRSPESSTILGRQLSFNCPRYITVG*
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mRNA from alignment at Ecto-sp13_S_contig11936:584..2053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11936.1650.1 ID=mRNA_Ecto-sp13_S_contig11936.1650.1|Name=mRNA_Ecto-sp13_S_contig11936.1650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1470bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11936:584..2053+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACACCATATTCCAGTCGTTCATCGCCTTCGTCGGCATGTCTTGGTGGGT
ACCGCACTCACGGCAAACGGCTCGACAAACCAGAGCAGATCCTAGCCTCA
GTTCGTGCGTGTGATACGTGTCTGCTGGTTTCTCGACGACGTCAACTCCC
CTCGCCGGGAGCACCCTTCTCAGGATGTTTGAAGGGAGGAGAGTAGCCCG
CTAACCCAAAGCTAGCAGATTTTCTATGATTTCCTCACTTTTCTGAGTAG
GTGAACAACCGCGGGTGCCAAGTTGTTGAGTGTGAAATAATGCGCGCTCG
TAAGCTCTGCGGACGGAATGACCTGTGGAGCCCACCACAGATGATTCGAC
GTTCAACGCCGACGGTCTCTTCTGGTTTTCCTATCCAAATGGAAATGCTG
CGCTAGAGAGGCATGGCAGGACGCTTTAAGGAAAAGTGGGCGCGGAACAT
GCTGAATAAACGTGACGGACGGCAAACACGAACTACTTCGAAGTAGAAAA
CACTCAACGCGGCCGAGTACCTCGTGTCCTGATTGCAGTTCGAGAGGACA
CAGAAGACATGCCCCCCTTGATATATTGCGAAGACGTCTTTATCCATGGC
TACGCCCTCACGCACACCGATGCAGAACCTGTAAGTTATTCCCCCCTCCT
CACGCCGTAATGCCATGTTTACGGCGCCCACGTCGGGATCACTATCGTCC
CCTTATCTTGTTGAGATACGTGGTGATTTCCGTGCGAGGGCTGCATAGCT
CACGTACAAGCGACGTTCGCGTACGCACCATGAATGAGCCCTCTTCCCCG
TCGACGGCAGGTGTTCGTTGAAAACAAGAATACGCTGGGCCACCGCTTCC
ATCCGATGGCGTCTAGCGGGACGAAGAAATACGTCGCCTCAGGACGGTCC
TAGGCGTCCGTCGCTCAAGATGTTCCTGCAGGGCTCTACCGGGGTGTGCG
GGGTGGATGGGCGGCCCGTGGTGATGGTCCGGAGGTCGCCAGAGAGCTCG
ACGATACTGGGAAGGCAGCTGTCGTTCAACTGCCCGCGGTACATAACGGT
GGGTTGAATATGATAGGGTCGGGAGACGAGGGTGGACCTTGTTCGAAGGT
GGCATTCACCAGACCCTCGAAGACTTCATCAACCGCCGTGTCTGATTTTG
ACGGCAGCGAAGTTGACAATGGGGCAGTCCTCGGGCATGCAGCTTTTGTT
GCAAGCTTGGTGTGTTTTGTCAATCCCGATCGGACCGATCGGAGGGGGGG
GTTCGCGTGACGTGCAACGATTGCTTCGACCCCAAGTTCTCGAAAAGGTG
TCGGCTGGTTGTGGTTGCTGCCGAGCGTTTGGTATCGCTCATGTCCAGTC
ACCGCCAGTGTCAGCGGAAGCATGAGCCTGTTCAACCTCGGGAGAAGAAG
TCCGAAACGCACCTCGGCGTCCATCGACAACGGAGGGAATAGTTGTTGTC
GTTCGAAAGGTGGTGTTCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11936:584..2053+

>mRNA_Ecto-sp13_S_contig11936.1650.1 ID=mRNA_Ecto-sp13_S_contig11936.1650.1|Name=mRNA_Ecto-sp13_S_contig11936.1650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11936:584..2053+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTGGTGTTCGTTGAAAACAAGAATACGCTGGGCCACCGCTTCCAT
CCGATGGCGTCTAGCGGGACGAAGAAATACGTCGCCTCAGGACGGTCCTA
GGCGTCCGTCGCTCAAGATGTTCCTGCAGGGCTCTACCGGGGTGTGCGGG
GTGGATGGGCGGCCCGTGGTGATGGTCCGGAGGTCGCCAGAGAGCTCGAC
GATACTGGGAAGGCAGCTGTCGTTCAACTGCCCGCGGTACATAACGGTGG
GTTGA
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