mRNA_Ecto-sp13_S_contig5949.16498.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5949.16498.1
Unique NamemRNA_Ecto-sp13_S_contig5949.16498.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5949.16498.1 vs. uniprot
Match: D8LK92_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK92_ECTSI)

HSP 1 Score: 623 bits (1607), Expect = 1.220e-202
Identity = 475/590 (80.51%), Postives = 486/590 (82.37%), Query Frame = 1 
Query:    1 PKVGAPPPPSKMFGRRAR-PLAVLDVPRMAQHPPPRLLLEDLEVFDLPGIAGGGVRNPYVVFSSDPKHLVKASPAGKPPKTTVKKKTLRAKWNKFTFQLAISDPVLLRHSHVSLVVMDKERGRKSKGEVIGVANLSLAEVLWINNSPPASANARSXXXXXXXXXXXXXXXXXXXXSLPRRRRSLSPDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKIGAAASAGEEASSISSSQQRRGTGMPRHRSHSSLPWGFFRHHNGGLSYREDGDSGHNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SDVTSVGCEGQDVACASAAXXXXXXXXXXPGVSPTSTTGTCSRALGGCEPSAGTTTDSKEGSAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQRLGPMFDIPLVKSGLHRGRISGRCTLVLGPGTGVNLLRLGSFRALGPGGVASVGGVGLAGLSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKLRDRASEGGENMGNKAPPGLASKSMSDRVLGKSRRMRSDGGGSGRDSTPAGCVCM 1755
            P+VGAPP P+KMFGRRAR PLAVLDVPRMAQHPPPRLLLEDLEVFDL GIAGGGVRNPYVVFSSDPKHLVKASPAGKPPKTTVKKKTLRAKWN++ FQLAISDPVLLR SHVSLVVMDKERGRKSKGEVIGVANLSLAEVLWINN PPASANARSXXXXXXXXXXXXXXXXXXX SLP RRRSLSPDRA                                KIG AASAGEE SS+SSSQQRRGTGMPRHRSHSSLPWGFFRH NGGLSYREDGDSGHNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    SD+TSVGCEGQDVA  SAA          PGVSPTSTTGT SRALGGCEPSAGTT DSKEGSA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EQRLGPMFDIPLVKSGLHRGRISGRCTLVLG GTGVNLLRLGS RALGPGGVASVGGVG+AGLSDG                                  AAKLRDRASEGGENMGNKAPPGLA+KS+SDRV  KSRR+RSD GG GRDS PAGCVCM
Sbjct:  372 PEVGAPPLPNKMFGRRARMPLAVLDVPRMAQHPPPRLLLEDLEVFDLQGIAGGGVRNPYVVFSSDPKHLVKASPAGKPPKTTVKKKTLRAKWNRYAFQLAISDPVLLRQSHVSLVVMDKERGRKSKGEVIGVANLSLAEVLWINNGPPASANARSXXXXXXXXXXXXXXXXXXXSSLPLRRRSLSPDRARHSNGTRERSSSLEGHGRGGGDGSSGVGGQDSKIGEAASAGEETSSLSSSQQRRGTGMPRHRSHSSLPWGFFRHQNGGLSYREDGDSGHNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDMTSVGCEGQDVAGTSAAARAAAA----PGVSPTSTTGTSSRALGGCEPSAGTTADSKEGSAYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EQRLGPMFDIPLVKSGLHRGRISGRCTLVLGSGTGVNLLRLGSVRALGPGGVASVGGVGVAGLSDGDGSSGGA---------------------------AAKLRDRASEGGENMGNKAPPGLAAKSVSDRVFSKSRRLRSDSGGGGRDSAPAGCVCM 929
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5949.16498.1 vs. uniprot
Match: A0A6H5KKF7_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF7_9PHAE)

HSP 1 Score: 593 bits (1528), Expect = 1.030e-189
Identity = 500/704 (71.02%), Postives = 510/704 (72.44%), Query Frame = 1 
Query:    1 PKVGAPPPPSKMFGRRAR-PLAVLDVPRMAQHPPPRLLLEDLEVFDLPGIAGGGVRNPYVVFSSDPKHLVKASPAGKPPKTTVKKKTLRAKWNKFTFQLAISDPVLLRHSHVSLVVMDKERGRKSKGEVIGVANLSLAEVLWINNSPPASANARSXXXXXXXXXXXXXXXXXXXXSLPRRRRSLSPDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKIGAAASAGEEASSISSSQQRRGTGMPRHRSHSSLPWGFFRHHNGGLSYREDGDSGHNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------SDVTSVGCEGQDVACASAAXXXXXXXXXXPGVSPTSTTGTCSRALGGCEPSAGTTTDSKEGSAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQRLGPMFDIPLVKSGLHRGRISGRCTLVLGPGTGVNLLRLGSFRALGPGGVASVGGVGLAGLSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------AAKLRDRASEGGENMGNKAPPGLASKSMSDRVLGKSRRMRSDGGGSGRDSTPAGCVCM 1755
            P+VGAPPPPSKMFGRR+R PLAVLDV RMAQ PPPRLLLEDLEVFDL GIAGGGVRNPYVVFSSDPKHLVKASPAGKPPKTTVKKKTLRAKWNK++FQLAISDPVLLRHSHVSLVVMDKERGR SKGEVIGVANLSLAEVLWINNSPPASANAR XXXXXXXXXXXXXXXXXXX SL  RRRSLSPDRA                                KIG AASAGEEASS+SSSQQRRGTGMPRHRS SSLPWGFFRHH+GGLSYREDGDSGHNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            SDVTSVGCEGQDVA ASAAXXXXXXXXXXPGVSPTSTTGTCSRALGGCEPSAGTTTDSKEGSAHXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXX EQRLGPMFDIPLVKSGLHRGRISGRCTL+LGPGTGVNLLRLGS RALGPGGVASVGGVG+AGLSDGXXXXXXXXXXXXXXXXX               XX                                                                                                          AAKLRDRASEGGENMGNKAPPGLAS S+SDRVL K RR+RSD GGSGRDSTPA CVCM
Sbjct:  324 PEVGAPPPPSKMFGRRSRMPLAVLDVSRMAQPPPPRLLLEDLEVFDLLGIAGGGVRNPYVVFSSDPKHLVKASPAGKPPKTTVKKKTLRAKWNKYSFQLAISDPVLLRHSHVSLVVMDKERGRNSKGEVIGVANLSLAEVLWINNSPPASANARXXXXXXXXXXXXXXXXXXXXSSLSLRRRSLSPDRAHRSNSTRERFSSLEGHGRGSGDGASGVGGRDNKIGEAASAGEEASSLSSSQQRRGTGMPRHRSLSSLPWGFFRHHSGGLSYREDGDSGHNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDVTSVGCEGQDVAGASAAXXXXXXXXXXPGVSPTSTTGTCSRALGGCEPSAGTTTDSKEGSAHXXXXXXXXXXXXXXXXFFHNLAGHHLXXXXXXXXXXXXXXXXXXXXXAEQRLGPMFDIPLVKSGLHRGRISGRCTLLLGPGTGVNLLRLGSVRALGPGGVASVGGVGVAGLSDGXXXXXXXXXXXXXXXXXGDLYGSPSPNDLRAAXXXXXXXXXXXCARGLGRLFSVARRGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRDIRKGGSRGRQSGGXGEVESRRGAGGRAATFSPPATAAAAKLRDRASEGGENMGNKAPPGLASNSLSDRVLSKPRRLRSDRGGSGRDSTPAVCVCM 1027
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5949.16498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LK92_ECTSI1.220e-20280.51C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KKF7_9PHAE1.030e-18971.02C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5949contigEcto-sp13_S_contig5949:547..6620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score623.2
Seed ortholog evalue1.2e-175
Seed eggNOG ortholog2880.D8LK92
Preferred nameINPP5E
Model size3770
KEGG rclassRC00005,RC00078,RC00482
KEGG koko:K07151,ko:K20278
KEGG ReactionR04216,R04404,R05976,R09827
KEGG Pathwayko00510,ko00513,ko00562,ko01100,ko04070,ko04141,map00510,map00513,map00562,map01100,map04070,map04141
KEGG ModuleM00072
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.phosphatidylinositol dephosphorylation
EggNOG OGsCOG5411@1,KOG0565@2759
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-16_002520.1
EC2.4.99.18,3.1.3.36
Cds size1725
COG Functional cat.T
CAZyGT66
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5949.16498.1prot_Ecto-sp13_S_contig5949.16498.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5949 580..4608 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463826.3167455-UTR-Ecto-sp13_S_contig5949:546..5791681463826.3167455-UTR-Ecto-sp13_S_contig5949:546..579Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5949 547..579 +
1681463826.3739812-UTR-Ecto-sp13_S_contig5949:4608..66201681463826.3739812-UTR-Ecto-sp13_S_contig5949:4608..6620Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5949 4609..6620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463826.3280559-CDS-Ecto-sp13_S_contig5949:579..6961681463826.3280559-CDS-Ecto-sp13_S_contig5949:579..696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5949 580..696 +
1681463826.3391697-CDS-Ecto-sp13_S_contig5949:1215..13341681463826.3391697-CDS-Ecto-sp13_S_contig5949:1215..1334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5949 1216..1334 +
1681463826.3478727-CDS-Ecto-sp13_S_contig5949:2186..23391681463826.3478727-CDS-Ecto-sp13_S_contig5949:2186..2339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5949 2187..2339 +
1681463826.3565366-CDS-Ecto-sp13_S_contig5949:2957..40541681463826.3565366-CDS-Ecto-sp13_S_contig5949:2957..4054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5949 2958..4054 +
1681463826.3651178-CDS-Ecto-sp13_S_contig5949:4369..46081681463826.3651178-CDS-Ecto-sp13_S_contig5949:4369..4608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5949 4370..4608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5949.16498.1

>prot_Ecto-sp13_S_contig5949.16498.1 ID=prot_Ecto-sp13_S_contig5949.16498.1|Name=mRNA_Ecto-sp13_S_contig5949.16498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=575bp
MFGRRARPLAVLDVPRMAQHPPPRLLLEDLEVFDLPGIAGGGVRNPYVVF
SSDPKHLVKASPAGKPPKTTVKKKTLRAKWNKFTFQLAISDPVLLRHSHV
SLVVMDKERGRKSKGEVIGVANLSLAEVLWINNSPPASANARSSSFSSAA
AAASAAASSRRRSSLPRRRRSLSPDRARRSNSTHERSSSLEDHGRGSSDG
SCGVGGQDKKIGAAASAGEEASSISSSQQRRGTGMPRHRSHSSLPWGFFR
HHNGGLSYREDGDSGHNTAAVAAAACGDGGGGGLRDHHHHHHHHRRASSG
SGGGSDVTSVGCEGQDVACASAAARATAAAAAAPGVSPTSTTGTCSRALG
GCEPSAGTTTDSKEGSAHGGGTGGGGGGGFNRRSSFFHNLAGHHLHHLHH
HQDEQDGRAAAAAAAAEQRLGPMFDIPLVKSGLHRGRISGRCTLVLGPGT
GVNLLRLGSFRALGPGGVASVGGVGLAGLSDGGGSSGGGMYRGGGVESRR
GAGGRAATFPPPATAAAAKLRDRASEGGENMGNKAPPGLASKSMSDRVLG
KSRRMRSDGGGSGRDSTPAGCVCM*
back to top

mRNA from alignment at Ecto-sp13_S_contig5949:547..6620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5949.16498.1 ID=mRNA_Ecto-sp13_S_contig5949.16498.1|Name=mRNA_Ecto-sp13_S_contig5949.16498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5949:547..6620+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAAAGGTCGGCGCGCCGCCTCCGCCCAGCAAGATGTTCGGCCGGCGCGC
GAGGCCGCTTGCGGTGCTTGACGTCCCGCGGATGGCGCAGCACCCCCCTC
CGCGGCTGCTGCTGGAAGACCTTGAGGTTTTCGATCTGCCGGGGATTGCG
GTGAGATGGGGGGGGGGGGGGGGGGGGCAGGGAAACGCATGGAATGGAAG
AGAGAGAGGGCGGGGAGAGATAGAGAGACGGGCAGACGGTGAGGGGGAAC
GGGGGCGACGAGAGGGACACATGAAAAGGAAGGAAGGGGAGAGGGAGAGG
GAGAGAGAGAGAGACAGAGCGGGGGAGGGGGGGAGAGATATACCGTATAC
CGTACAGGTAGGGCACCACCCTGAGGACGTTATGTTGAGTGTGGTAACCG
GCGTCGCTTTTCTGTGCTCTAAGGACAGTTTGGACTCGCCCTTGTTCGCC
CCCATCACAACGCTGTTTTTTTTGTTGTTGCTTTTCTCGTCATCTAGAAG
CTACCGATCAATATGCTTAACTTCTCTGCGTGGAGGACTTACCTGATCAT
GCGTCATCGCCGTTGCGTATGCTGTTGCCGCTGGCCTCTGCCACCTTGTG
TCGCCTTTCCCCGACTTTTGTAACGCTGCACCGCTGCACGCTACTTCTCG
AACCTGTTTGCCGCGAAAGGGCGGCGGGGTCAGAAACCCGTACGTCGTCT
TCTCCTCCGACCCTAAGCACCTAGTGAAGGCCTCTCCCGCTGGAAAGCCG
CCGAAAACGACGGTGAAAAAGAAGACCCTCAGAGCCAAGTGAGAGGAAGA
GAGAAGGAAGAAAAAATGCCGCATTATGCGTTCAATCGTCTAGGCCAAGC
ATTTGGTGTAATGCACACGCGTCATGATTTTGTCGTTCTCCTGTAGGAAA
GAAAATACCGGAGGCCGCGTTATGCGTTTCGCCGTCCAGGCTAAGCTCTC
GACCCTCTAAAAGACCAAAGGTCGCATTATGCTTTTTGCCGAACGCGCTA
TGCTTTCGGCCCTTTGGTGTGTATGCACACGCACCTTGTTTTTTTTCTCC
CGCAAGGACTGACTGAAAGTTCCGATAGGGAGCGGGGGGCGTACATAAGT
AAACGCATGCCGTTTTCGTTGTAGACCATAGACCTCGTATTCCTACAATG
CCGGGGTGGCAGTTGGGGGCGGCGCTGGAGACCACCGCGCGCCACACAGC
CTTTTGAGTGCCTTCGCCAGTGTACACTCCTGTTGTGGCGTCGTGGTCGG
TTCCGTGTCACGGTCCCGTCCGGTGCGAGGGTTGCTTAACCGTTATGAGC
AGGGAACGGGGTCCTGCACTGCTGTCGAACCAAGCTCTGGTTGTCCGTGC
CCCGACGGCATGGCGATTTCTTCGAGGAACCGTGACCCGCGTGTTGCCGG
AATAGATGTTTTTTGTTGTTTGTCTTCACATGGTGAACTTGTCCGGTCTC
CGCTCAGTACTTTCTAATGTCCGTACTGGTACAACTGATGCGGACGTCTT
TCGCGGTCACAAACCAACTACCGGAGGGAGACGGTACACCTTTCTAGACC
TAAAAAAAAATAAGAATAGGAATGGACCCAGCAAAACACAATCCAACCGC
GAAAATATCCCGTCCGATCATGTCTACAAAAACAAAAAAGGTGGAATAAG
TTTACGTTCCAGCTGGCTATCTCGGACCCGGTGCTCCTCCGGCACTCGCA
CGTGAGCCTGGTGGTGATGGACAAGGAGAGAGGCCGCAAGAGCAAAGGCG
AGGTCATCGGTGTCGCCAATCTGTCTCTCGCGGAGGTCCTCTGGTGAGAG
CCAATTTTTGAGAAAATGTAGATACATCCGATCACGGAAAGACTTCCCGT
TCGAGGTATGACTACAGAGTAGTAGCAGGCGAGGGGTGTGTGTTGAAGTC
TTTGCAGTGAGGGGGAGAAAATACGGGCTGGATGGCTTGCTGTTGGTCGT
TTGGTCGGTTACCGCAGCCTCCGTGGTAGTGGTGTTGAGCGTGGTGGTCA
TCGTGATGCTTCCGTCGGCGCCACAGCGGCGGCCTTGCGTTGGCGGAGTT
GCAGATATTTGTGTGTCTGAGTTCGTTTGCCGGATCGTCGATATTGATGC
GAATGCCACAGTGTTGTGCCAGAAGCACAAAGGACGATGCAAGTGGTAAG
CGTAGCGTGTGGTTTTTTTAACCGCAGTGACACCCGACTGCCTTCATGAG
GAGGATTGATGCATCGTACAACATTTTTTGCATGCCATGCGATGTTACCG
GTAAGCTAGCTCACGACCATGGGGCCGCGTTGTCGCTTTGAGTTTTCCGT
CCACTGTCAGCAGCTCCCCGACCCCCCTCCACGACCACATCCATTTGTAT
CATTGTCACCCCCATCTTCGGCGTTTGACTGCCCGCCCGACAACGCCTGG
ACGACTACCAGGATCAACAACAGCCCACCGGCTTCCGCGAACGCAAGGAG
CTCCAGCTTTTCTTCCGCCGCTGCGGCTGCCTCCGCCGCCGCCTCATCTC
GCCGAAGATCGTCGCTACCGCGCCGCCGCCGCTCCTTGTCGCCGGACCGC
GCGCGCCGCAGCAACAGCACCCACGAGCGCTCCTCGTCGTTGGAAGACCA
TGGCCGCGGCAGCAGTGACGGCAGCTGCGGGGTTGGTGGCCAAGACAAAA
AGATAGGAGCGGCCGCCTCCGCGGGGGAGGAGGCGTCGTCGATCTCGTCC
TCTCAGCAGCGGCGGGGAACCGGGATGCCCCGTCACCGGTCCCACTCCTC
CCTCCCGTGGGGCTTCTTCCGCCACCACAACGGAGGCTTGTCCTACCGCG
AGGATGGGGACAGCGGCCACAACACAGCAGCCGTCGCTGCTGCTGCTTGC
GGAGACGGCGGCGGCGGCGGCCTGCGAGATCACCACCACCACCACCATCA
CCATCGGCGCGCCAGCAGCGGCAGCGGTGGCGGGAGCGACGTCACGAGCG
TCGGGTGCGAGGGCCAGGATGTCGCCTGTGCCTCGGCGGCAGCGCGAGCA
ACAGCGGCAGCAGCAGCGGCACCGGGAGTGTCGCCGACGTCGACGACGGG
GACCTGCTCTCGCGCGCTGGGCGGCTGCGAACCATCCGCGGGAACAACGA
CGGACTCGAAAGAAGGGTCGGCGCACGGAGGCGGAACCGGCGGCGGCGGC
GGGGGCGGCTTCAACCGCCGTAGCTCGTTCTTCCACAACCTCGCCGGCCA
CCACCTCCACCACCTCCACCACCACCAAGACGAGCAAGACGGGCGGGCGG
CGGCGGCAGCGGCAGCAGCAGAACAGCGGTTGGGACCGATGTTCGACATA
CCGCTGGTGAAGAGCGGCCTCCACCGCGGGCGAATCAGCGGCCGGTGCAC
GCTGGTGCTCGGGCCTGGCACCGGCGTGAACCTCCTGCGACTAGGAAGCT
TCCGAGCGCTGGGCCCGGGGGGAGTCGCGAGTGTTGGAGGCGTTGGCCTC
GCCGGGCTGAGCGATGGCGGCGGCAGCAGCGGCGGGGGTATGTACAGAGG
CGGCGGCGGTGGCCGCAGCGGCGATTTGTGCGGATCTCCGTCGCCGATCG
AATTAAGAGCGGCTGCGGCGGCGGCCCGCGGCGGCGGTGGCGGTTGTGCG
AGAGGCCTCGCCCGATTCTTTCCGGTCGGGCGGAGAGGGCGGGAGCGTGC
GCGCAGCAACAGCGCCGGTAGCAGCAGGAGTCGCAGCCGAAGCAGCAGCA
GCAGTAGCAGCAGCAGTAGCAGCAGCGGCAGCAGGAGGAGAAGGAGCAGC
CGAGGCAGGGGCCGCACGAGCGACATCCGCAAGGGGGGCAGTAGGGGCCG
GCAGAGCGGCGGCGGCGGTGAAGTTGAAAGCCGTCGGGGGGCGGGGGGTC
GAGCCGCCACTTTTCCGCCTCCGGCAACGGCAGCGGCGGCGAAATTGCGG
GACCGCGCTAGCGAGGGGGGGGAGAATATGGGGAACAAGGCGCCGCCGGG
GCTGGCTTCCAAGAGTATGTCGGACCGGGTGCTCGGCAAGTCGCGTCGCA
TGCGCAGCGACGGCGGGGGCAGCGGCCGGGATTCCACCCCCGCTGGTTGT
GTCTGTATGTAGCTTAGCTGGTTTCGGCCCTGGGGACTGCTCCAACAGCA
TCTTGACGGCTTTTGTTGTTGTTGTTTTGTTCAGTGCTTGGCATTGGTGG
GTTGATACAAGCCGCCGCCATGTTTTGAATCTGTTGTGTTAAGGCGTGCT
CGCTCAGTGCTCGCGCTTGAGGGTGCCCTTCGCACCTCTTTTTTTTTTCA
AGAAGTTGGTGGCCTCTTGGGGACTACCGCTGCGAGCAAAGGAGCGAGCG
AGAGAGCTGTGTGGCGACTTTCTGAAGGCAAGGCATGCGCCCACAGTTTG
AAGGCAGGGCGGCAAGCGGTGTGTGCGACTTGCTGTTGTCGGGGCTGCAT
TCGCAGTGGTGTTGAGTTTTTGGTTCGTTCAATCGAGAGGGGTGCAGACA
CACATGCTTGCGTATCGTTTACATCACGACGCCCTCTCTCTCTCTCTCTC
TGTCTCTCTCTCTCATGTTTTGTTTGCAGCACCCGGAGCTCTCCTAGCGA
TGAAACCTGGTCGCCACTTAACCGTTGCGTGTTGTGCTGGCGCTGGCTTT
TTTTTTGTGCGTGTTTTGCGCCAGAGGGTGTTCAACTCTACTAGATACCA
TTTTTTTTAGTGTGGTTTTGTGTTCGCTTTTTTCCTTTCGCAGGTCGTGT
TGTGTGTGCGTCTTTGTGCCGATGCCGGCGGAAATATGGGTAGGGACTTT
TTTGCCAAAGCTCGTATTGGGTCCCTGTTGCAATGACATCGTTACCCACG
AGTTGACCGACCTATGCGCGCCCCTCCCGCGCATTTTGCGTGCCCCCCCC
CCCGGATCGGTGACTCGTTATTCGAATAGATAGAGAAAATGAGGGTGATA
TATTTGTGTTGCCGGAACCCCTTGGAGTGCACGTAGGATCGCCCCGCGAG
CGGATGGTGGCTTGTTCAACTTGTTGTCTAGAGGAGACAAAGGAGGATGG
ATGCGCTTGCGTGTTTGCCCTTTCTTGTGCAGAGTATGTGCAAGAACGGT
CGGTTTTCCTACGGTTTCTTGTTTTTGGGTAAACGATATAAGTGTTTGTG
AGTGAGCGTGCCGTAATTAGTTTTTTTTGTGGACCCCCCGCCCCCCCGCC
GGGAATTCCACACTCCTCCTGCGAACCCCCCTCCATCCTTCTTTTGAAGG
AAACTTTGCGAGGGGTTCTGCCGTCATGTCGCGATTTGTGCTAGAGAAAG
ACATGTGTAAGCTTTGTTGAAATATTCTCTGGAGCGCAGTCTAAATTATA
ACTTGGAATGGTATTTTTGTTATGTGGGTACTATTTTCATGTCGGAGCCC
GTTTGCTTGTCGTTTTGTCCTTTGACTTTACCTGTGTTGCGTATACGGTT
CGTGTTGAAGCGCATGTTCGCAGCTATCTGTGTGGTTCCGACCCTGACAG
CAATGTAGATTTATTCGTGGTCGTTGGTCTTTCGGTCGTCGCTAGTGTCT
TGTATGTCTACACTGTACGTTCATGCCTTCAGGGACGGGTGGAGGTTTTT
AGACAATGGCGGAAGTTTCGTGGAAATAGAAAACATGGTGCGTAAGGTTT
TTGCTTCGCTGCTGTTGGCCGACACCGAAGCCTGAGAGAGGATGCGTCAT
TTGGTGAGGAGGCTGGCTATGTGTTAAGCGCAGGTTTGTTTTCGTTGAAA
GGGCACTCGATCAACCAGCGGAGCGAGCAGCTGATGGTGCCTGAAAGGTG
GTGGTTATGTAGCTGCGAGACCCTCAAGAGCACACAATGCCTTTTATGTA
TGTAGTGTCAGGCCGTGCGCGCAGCGATTAGGTGTGCCGATGCGCGCACA
GCATCAACCGACATTGATTTCCTATGTGGCGGTTTTGCATCTCTTTTTTA
TTCCAGTCTGTGGTAGTACTTTTTCTTGGTCGTGGGGAAGCAGGTCGTTA
GCTCATCCCATCGGTTCCTCTGACGGTGATGTAAGTATGTACCGTACGCC
ATCATACATAGTTCGCGTGCAACATCCGTACATGAAAAACGAAAAAAATT
GTTGGCCCCTAGCTACGTGGATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5949:547..6620+

>mRNA_Ecto-sp13_S_contig5949.16498.1 ID=mRNA_Ecto-sp13_S_contig5949.16498.1|Name=mRNA_Ecto-sp13_S_contig5949.16498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1725bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5949:547..6620+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGCCGGCGCGCGAGGCCGCTTGCGGTGCTTGACGTCCCGCGGAT
GGCGCAGCACCCCCCTCCGCGGCTGCTGCTGGAAGACCTTGAGGTTTTCG
ATCTGCCGGGGATTGCGGGCGGCGGGGTCAGAAACCCGTACGTCGTCTTC
TCCTCCGACCCTAAGCACCTAGTGAAGGCCTCTCCCGCTGGAAAGCCGCC
GAAAACGACGGTGAAAAAGAAGACCCTCAGAGCCAAGTGGAATAAGTTTA
CGTTCCAGCTGGCTATCTCGGACCCGGTGCTCCTCCGGCACTCGCACGTG
AGCCTGGTGGTGATGGACAAGGAGAGAGGCCGCAAGAGCAAAGGCGAGGT
CATCGGTGTCGCCAATCTGTCTCTCGCGGAGGTCCTCTGGATCAACAACA
GCCCACCGGCTTCCGCGAACGCAAGGAGCTCCAGCTTTTCTTCCGCCGCT
GCGGCTGCCTCCGCCGCCGCCTCATCTCGCCGAAGATCGTCGCTACCGCG
CCGCCGCCGCTCCTTGTCGCCGGACCGCGCGCGCCGCAGCAACAGCACCC
ACGAGCGCTCCTCGTCGTTGGAAGACCATGGCCGCGGCAGCAGTGACGGC
AGCTGCGGGGTTGGTGGCCAAGACAAAAAGATAGGAGCGGCCGCCTCCGC
GGGGGAGGAGGCGTCGTCGATCTCGTCCTCTCAGCAGCGGCGGGGAACCG
GGATGCCCCGTCACCGGTCCCACTCCTCCCTCCCGTGGGGCTTCTTCCGC
CACCACAACGGAGGCTTGTCCTACCGCGAGGATGGGGACAGCGGCCACAA
CACAGCAGCCGTCGCTGCTGCTGCTTGCGGAGACGGCGGCGGCGGCGGCC
TGCGAGATCACCACCACCACCACCATCACCATCGGCGCGCCAGCAGCGGC
AGCGGTGGCGGGAGCGACGTCACGAGCGTCGGGTGCGAGGGCCAGGATGT
CGCCTGTGCCTCGGCGGCAGCGCGAGCAACAGCGGCAGCAGCAGCGGCAC
CGGGAGTGTCGCCGACGTCGACGACGGGGACCTGCTCTCGCGCGCTGGGC
GGCTGCGAACCATCCGCGGGAACAACGACGGACTCGAAAGAAGGGTCGGC
GCACGGAGGCGGAACCGGCGGCGGCGGCGGGGGCGGCTTCAACCGCCGTA
GCTCGTTCTTCCACAACCTCGCCGGCCACCACCTCCACCACCTCCACCAC
CACCAAGACGAGCAAGACGGGCGGGCGGCGGCGGCAGCGGCAGCAGCAGA
ACAGCGGTTGGGACCGATGTTCGACATACCGCTGGTGAAGAGCGGCCTCC
ACCGCGGGCGAATCAGCGGCCGGTGCACGCTGGTGCTCGGGCCTGGCACC
GGCGTGAACCTCCTGCGACTAGGAAGCTTCCGAGCGCTGGGCCCGGGGGG
AGTCGCGAGTGTTGGAGGCGTTGGCCTCGCCGGGCTGAGCGATGGCGGCG
GCAGCAGCGGCGGGGGTATGTACAGAGGCGGCGGCGTTGAAAGCCGTCGG
GGGGCGGGGGGTCGAGCCGCCACTTTTCCGCCTCCGGCAACGGCAGCGGC
GGCGAAATTGCGGGACCGCGCTAGCGAGGGGGGGGAGAATATGGGGAACA
AGGCGCCGCCGGGGCTGGCTTCCAAGAGTATGTCGGACCGGGTGCTCGGC
AAGTCGCGTCGCATGCGCAGCGACGGCGGGGGCAGCGGCCGGGATTCCAC
CCCCGCTGGTTGTGTCTGTATGTAG
back to top