mRNA_Ecto-sp13_S_contig5946.16497.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI) HSP 1 Score: 623 bits (1606), Expect = 5.180e-218 Identity = 313/371 (84.37%), Postives = 318/371 (85.71%), Query Frame = 1
Query: 4 VVGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXX-VYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALEPTPLPPRSQDDRTNTGSGGITAAGNGSKEAAEVRESCRVMAARLSELDPMHGRFYEFVEKGGTVIGGQQMRGSAREADR 1113
VVGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRI DA SRQ GSD G +YEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHC VAERMGL AREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADD DSC DSERYEN+LRAEAATLGELIEVE RCKWAEVALLLVSQRLANALEP P PPR+QD +TAAGNGS EA EVRESCR MAARLSELDPMHGRFYEFVEKGGTV+GGQQMRGSAREADR
Sbjct: 29 VVGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIEDAHSRQGGSDDGDKAAEEISSGTLLSPSVQEQQKKKIYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGTDSCSDSERYENILRAEAATLGELIEVEVRCKWAEVALLLVSQRLANALEPRPQPPRAQDXXXXXXXXXVTAAGNGSTEAGEVRESCRGMAARLSELDPMHGRFYEFVEKGGTVMGGQQMRGSAREADR 399
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA) HSP 1 Score: 236 bits (601), Expect = 3.610e-68 Identity = 129/334 (38.62%), Postives = 172/334 (51.50%), Query Frame = 1
Query: 64 LLGKLLRLHPDYYSMWNFRKEAVLAEL------SRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDR-WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALEPTPLPPRSQDDRTNTGSGGITAAGNGSKEAAEVRESCRVMAARLSELDPMHGRFYE 1044
++ K++R++PDYYSMWN+RKEA L L +++G R V E+ELAL+ KRNPK Y AWHH +W LERG D +GG +A +L LC FL LD RNFHC V E+ GL A E+F FTT+KI +NFSNYSAFH+RSK+LP + E G L+ EL++ H A FTEP DQS WWYH FL+ WA ++ ++Y +L+ E + EL+ VE RCKWA V L + LA + T E E+ R + L ++DPMH +Y+
Sbjct: 55 VVDKVVRVNPDYYSMWNYRKEAALPILEAAEGQAKVGVQERRAQ----------------------------VVEQELALAAAAFKRNPKCYSAWHHRRWVLERGADAIGGEAAYRRELELCRQFLLLDSRNFHCWAYRGWVVEQAGLSAEEDFAFTTEKILENFSNYSAFHYRSKLLPAVAEARGAGGVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWAAEALHGTEHHDKYPELLQKEVDCIRELLFVEERCKWALVTLHHLLCALARTAQDT--------------------------EGVELMAEARSLVTTLVDVDPMHKSYYD 334
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: A4SAM5_OSTLU (Geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4SAM5_OSTLU) HSP 1 Score: 162 bits (409), Expect = 1.570e-41 Identity = 99/261 (37.93%), Postives = 135/261 (51.72%), Query Frame = 1
Query: 73 KLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLG-----GRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVAL 840
KLL L P+ + WN+R+E + A R GDA + G D G XXXXX + +EL +S ++ NPKSYP+W+H KW L R ++ G R L + LCA L D RNFHC VAE++G EE +T KI+ NFSNYSA+H+RS +L E G + L E +L +A +TEP DQS W YH W A + D++ E++L E T E+ ++E CKW +AL
Sbjct: 6 KLLGLCPEILTAWNYRRETIEA---RTGDAATTSEGGDEGEXXXXXDW----------------WSDELRVSETALRNNPKSYPSWYHRKWVLRRMIEAFGTEEGKARETLEREAKLCADMLNADDRNFHCWAYRRFVAEKLGRGVDEELQYTLTKIENNFSNYSAWHYRSAIL----ESRGAADAETLEREFELASNAFYTEPEDQSAWMYHR----WLTSRARAIEDAKDRESLLERERQTCREVSDLEPTCKWPLLAL 239
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: UPI000C78249F (geranylgeranyl transferase type-2 subunit alpha-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78249F) HSP 1 Score: 162 bits (410), Expect = 1.150e-39 Identity = 85/234 (36.32%), Postives = 131/234 (55.98%), Query Frame = 1
Query: 7 VGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLL 708
+G + +RA G++D + + G++L+ +PD ++WN RKE +L ++ +G + + G G + EL L+ C+ NPKSY AWHH W LE ++ R +LALC FL+LD RNFHC VA++ G+ ++E +FT +KI++NFSNYSA+H+RSK+LP + + + + ELDL +A FT+PAD S W+YH +LL
Sbjct: 32 MGVLLSRRAEGKLDDQQLVISGQVLQGNPDISTLWNIRKEILLHYIN-LGTQKEKDVGE---GEKGQEEVDCGKEENVPMHDQDEMLSSELDLTQQCLIANPKSYGAWHHRTWCLEHMINPDWSR-----ELALCRKFLKLDERNFHCWDYRKWVADKAGVKPQQELEFTLEKIEENFSNYSAWHYRSKLLPLLNPDTSSIQEDQVHKELDLVQNAAFTDPADSSAWFYHTWLL 256
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: UPI000644DC6F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DC6F) HSP 1 Score: 156 bits (395), Expect = 4.070e-39 Identity = 95/277 (34.30%), Postives = 140/277 (50.54%), Query Frame = 1
Query: 61 QLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLA-NALEPTPL 888
Q+ K+L ++P+YY++WN+R++ L + + Q+ +Y E+ +CI+R KSY W+H KW + + + +L LC+ L+LD RNFHC V E+ GLP +E+ +TT KI+QNFSNYSA+H RS ++P M E ++ L +E +L +A+FTEP DQS W YH +L+ A CD Y+ V AE + ELIE+E CKW LL + L +A E PL
Sbjct: 50 QVTKKVLEINPEYYTVWNYRRD-TLVYFATVKPNEDMQT----------------------------LYAAEMKFIEECIQRFTKSYWVWYHRKW-----ISVRQDKCDWERELKLCSKLLDLDLRNFHCWSYRRFVGEKSGLPLEKEYAYTTTKIEQNFSNYSAWHQRSALIPLMNTEP-QQLFEKLKEEFELVRNAVFTEPKDQSSWIYHKWLV--GTMKAIPGCD---YKEVFNAEVEAINELIEIEPDCKWPIYTLLTLKLDLGCDATELRPL 286
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: A0A0M0JE27_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE27_9EUKA) HSP 1 Score: 157 bits (398), Expect = 5.310e-39 Identity = 97/289 (33.56%), Postives = 139/289 (48.10%), Query Frame = 1
Query: 13 AIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAG--DLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDR----WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRL 861
A +RA DA + + K++ +PD+ +MWNFR+E VL + D +R++ E AL+ +C+ NPKSYP W+H +W L L G +L L A L LD RNFHC V G+ A E FTT KI+ NFSNYSA+H+RSK+LP + AG + +L +EL+L +A FT P D S W+YH +L+ A + +E ++RAE + EL+E+E CKW A + + L
Sbjct: 32 AAMERRAAKVYDAASLEAVAKVVTENPDFATMWNFRRE-VLGHMFPDADVAARKAAC----------------------------LAEFALTQECLGINPKSYPVWYHREWVL------LWGECEWQWPVELKLTAKLLALDDRNFHCWTYRRNVVRVAGVTAEAELAFTTTKIQANFSNYSAWHYRSKLLPAVHASAGAEGAAQLGAVLRNELELVRNAFFTAPEDSSAWFYHRWLIAQLAPGAAAALPPAEFEALVRAELQMVDELLELEPECKWPLAAAAFLGRTL 285
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: UPI000CEFEA1D (geranylgeranyl transferase type-2 subunit alpha-like n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=UPI000CEFEA1D) HSP 1 Score: 152 bits (385), Expect = 3.510e-38 Identity = 87/235 (37.02%), Postives = 121/235 (51.49%), Query Frame = 1
Query: 13 AIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRM---VEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLL 708
AI KR TGQ+D E +L ++L ++PD+ ++WNFR+E +L L G QS G EL+ C++ NPKSY WHH W +E A +L LCA FLE+D RNFHC V +R + A +E FT I +NFSNYS++H+RS++LPR+ + G +L EL+L +A FT+P DQS W+YH +LL
Sbjct: 34 AIFEKRKTGQLDKEALELTNQILGVNPDFATLWNFRRE-ILLRLEPEGSPEEMQSLCRG----------------------------ELSFLESCLRVNPKSYGTWHHRCWVMEHV-----PHPDWARELELCAKFLEIDERNFHCWDYRRFVVQRAQVSAADELHFTDRLITRNFSNYSSWHYRSRLLPRLHPDPRQPGRPTEAVLLKELELVQNAFFTDPNDQSAWFYHRWLL 234
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: A0A821PVZ3_9NEOB (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821PVZ3_9NEOB) HSP 1 Score: 152 bits (383), Expect = 5.810e-38 Identity = 83/236 (35.17%), Postives = 124/236 (52.54%), Query Frame = 1
Query: 22 HKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRM---VEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAD 720
+KR GQ+D E ++ ++L L+PD+ S+WN R+E LA S D R +Y EL+ +C++ NPKSY W+H W ++ + A +L LC FLE+D RNFHC VA+ +P +E ++T+D I +NFSNYS++H+RSK+LP++ + G +L EL+L +A FT+P DQS W+YH +LL AD
Sbjct: 37 NKRKGGQLDKEALEITAQILALNPDFASLWNLRREVFLALGSDRSDEEMRS-----------------------------LYLSELSFLQNCLRVNPKSYGTWYHRCWIMKHMPE-----PDWARELTLCNQFLEIDERNFHCWGYRRFVAQSFHVPPSDELEYTSDLITKNFSNYSSWHYRSKLLPQIHPDPQHLGRATENVLLSELELVQNAFFTDPNDQSAWFYHRWLLGRAD 238
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: H3GF34_PHYRM (Geranylgeranyl transferase type-2 subunit alpha n=6 Tax=Phytophthora TaxID=4783 RepID=H3GF34_PHYRM) HSP 1 Score: 152 bits (385), Expect = 1.190e-37 Identity = 100/331 (30.21%), Postives = 152/331 (45.92%), Query Frame = 1
Query: 64 LLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALEPTPLPPRSQDDRTNTGSGGITAAGNGSKEAAEVRESCRVMAARLSELDPMHGRFYEFVEK 1056
L LL L+P+++ +W++R++ + A R D + + + + EL L++D ++RNPKSY AW +W +++GL + L ++ LC LELD RNFHC V + G+ ++ FTT KI+QNFSNYSA H RS LP + +L DE+ L A+FTEP DQS W+Y+ +LLT + +S L+++ LGEL+E+E KW V + + RL E + K++ E+ E R LDP H R+YE + K
Sbjct: 54 LTSHLLLLNPEFHVVWSYRRQVIDALAKRAQDPAAERH---------------------------EMAKTELKLTLDALQRNPKSYSAWFQRRWIVDQGL------ADLKKEIGLCDKLLELDERNFHCWNYRRHVCKLAGVAEEDQLAFTTQKIEQNFSNYSALHHRSITLPEPLTA------DVLFDEIGLVQQAVFTEPDDQSAWFYYRWLLTSMVELVESSAGDA--VGFLKSQVQWLGELLEMETEAKWVVVTVADLHSRLGAITE-------------------VHGWEESKKQSVELYE-------RAIALDPDHRRYYEDMMK 317
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: A0A8K1CD87_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD87_PYTOL) HSP 1 Score: 152 bits (383), Expect = 2.590e-37 Identity = 97/338 (28.70%), Postives = 162/338 (47.93%), Query Frame = 1
Query: 28 RATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALEPTPLPPRSQDDRTNTGSGGITAAGNGSKEAAEVRESCRVMAARLSELDPMHGRFY 1041
RA + A L +L L+P+++ +W +R+E +L+ L + + + ++ + + EL L+ + I+R+PKSY +W +W +++GL L ++ALC L+LD RNFHC V + G+ +E F T KI+QNFSNYSA H RS LP+ + ++L DE+ + A+FTEP DQS W+Y+ +L+T D S + L ++ L EL+E+E KW V L + +RL+ A +++D+ + A++ +E RV +L +DP H ++Y
Sbjct: 42 RAQRVLAAHLLPLTSHVLLLNPEFHVIWGYRREILLSLLDKHAQSATEEA-----------------------MTPEEIAKTELKLTFEAIQRHPKSYSSWFQRQWIVDKGLC-----PDLKKEIALCNRLLDLDERNFHCWNYRRHVCQLAGVSREDELAFATLKIEQNFSNYSALHHRSITLPKPLTR------EILHDEIGIVQQAVFTEPDDQSAWFYYRWLVTSMLDVVQS--EPSEAVEFLDSQIQWLLELLEMESEAKWVLVTLADLQRRLSVA--------QTEDEAS----------------ASQAKEQSRVYYKQLLSVDPDHAQYY 319 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5946.16497.1 >prot_Ecto-sp13_S_contig5946.16497.1 ID=prot_Ecto-sp13_S_contig5946.16497.1|Name=mRNA_Ecto-sp13_S_contig5946.16497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=358bp MDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGback to top mRNA from alignment at Ecto-sp13_S_contig5946:2808..7019- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5946.16497.1 ID=mRNA_Ecto-sp13_S_contig5946.16497.1|Name=mRNA_Ecto-sp13_S_contig5946.16497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5946:2808..7019- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5946:2808..7019- >mRNA_Ecto-sp13_S_contig5946.16497.1 ID=mRNA_Ecto-sp13_S_contig5946.16497.1|Name=mRNA_Ecto-sp13_S_contig5946.16497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5946:2808..7019- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |