mRNA_Ecto-sp13_S_contig5946.16497.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5946.16497.1
Unique NamemRNA_Ecto-sp13_S_contig5946.16497.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI)

HSP 1 Score: 623 bits (1606), Expect = 5.180e-218
Identity = 313/371 (84.37%), Postives = 318/371 (85.71%), Query Frame = 1
Query:    4 VVGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXX-VYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALEPTPLPPRSQDDRTNTGSGGITAAGNGSKEAAEVRESCRVMAARLSELDPMHGRFYEFVEKGGTVIGGQQMRGSAREADR 1113
            VVGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRI DA SRQ GSD G                        +YEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHC      VAERMGL AREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADD  DSC DSERYEN+LRAEAATLGELIEVE RCKWAEVALLLVSQRLANALEP P PPR+QD         +TAAGNGS EA EVRESCR MAARLSELDPMHGRFYEFVEKGGTV+GGQQMRGSAREADR
Sbjct:   29 VVGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIEDAHSRQGGSDDGDKAAEEISSGTLLSPSVQEQQKKKIYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGTDSCSDSERYENILRAEAATLGELIEVEVRCKWAEVALLLVSQRLANALEPRPQPPRAQDXXXXXXXXXVTAAGNGSTEAGEVRESCRGMAARLSELDPMHGRFYEFVEKGGTVMGGQQMRGSAREADR 399          
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA)

HSP 1 Score: 236 bits (601), Expect = 3.610e-68
Identity = 129/334 (38.62%), Postives = 172/334 (51.50%), Query Frame = 1
Query:   64 LLGKLLRLHPDYYSMWNFRKEAVLAEL------SRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDR-WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALEPTPLPPRSQDDRTNTGSGGITAAGNGSKEAAEVRESCRVMAARLSELDPMHGRFYE 1044
            ++ K++R++PDYYSMWN+RKEA L  L      +++G    R                              V E+ELAL+    KRNPK Y AWHH +W LERG D +GG +A   +L LC  FL LD RNFHC      V E+ GL A E+F FTT+KI +NFSNYSAFH+RSK+LP + E  G      L+  EL++ H A FTEP DQS WWYH FL+ WA ++       ++Y  +L+ E   + EL+ VE RCKWA V L  +   LA   + T                          E  E+    R +   L ++DPMH  +Y+
Sbjct:   55 VVDKVVRVNPDYYSMWNYRKEAALPILEAAEGQAKVGVQERRAQ----------------------------VVEQELALAAAAFKRNPKCYSAWHHRRWVLERGADAIGGEAAYRRELELCRQFLLLDSRNFHCWAYRGWVVEQAGLSAEEDFAFTTEKILENFSNYSAFHYRSKLLPAVAEARGAGGVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWAAEALHGTEHHDKYPELLQKEVDCIRELLFVEERCKWALVTLHHLLCALARTAQDT--------------------------EGVELMAEARSLVTTLVDVDPMHKSYYD 334          
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: A4SAM5_OSTLU (Geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4SAM5_OSTLU)

HSP 1 Score: 162 bits (409), Expect = 1.570e-41
Identity = 99/261 (37.93%), Postives = 135/261 (51.72%), Query Frame = 1
Query:   73 KLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLG-----GRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVAL 840
            KLL L P+  + WN+R+E + A   R GDA +   G D G XXXXX                  + +EL +S   ++ NPKSYP+W+H KW L R ++  G      R  L  +  LCA  L  D RNFHC      VAE++G    EE  +T  KI+ NFSNYSA+H+RS +L    E  G    + L  E +L  +A +TEP DQS W YH     W    A +  D++  E++L  E  T  E+ ++E  CKW  +AL
Sbjct:    6 KLLGLCPEILTAWNYRRETIEA---RTGDAATTSEGGDEGEXXXXXDW----------------WSDELRVSETALRNNPKSYPSWYHRKWVLRRMIEAFGTEEGKARETLEREAKLCADMLNADDRNFHCWAYRRFVAEKLGRGVDEELQYTLTKIENNFSNYSAWHYRSAIL----ESRGAADAETLEREFELASNAFYTEPEDQSAWMYHR----WLTSRARAIEDAKDRESLLERERQTCREVSDLEPTCKWPLLAL 239          
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: UPI000C78249F (geranylgeranyl transferase type-2 subunit alpha-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78249F)

HSP 1 Score: 162 bits (410), Expect = 1.150e-39
Identity = 85/234 (36.32%), Postives = 131/234 (55.98%), Query Frame = 1
Query:    7 VGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLL 708
            +G +  +RA G++D +   + G++L+ +PD  ++WN RKE +L  ++ +G  + +  G    G                      +   EL L+  C+  NPKSY AWHH  W LE  ++    R     +LALC  FL+LD RNFHC      VA++ G+  ++E +FT +KI++NFSNYSA+H+RSK+LP +  +    +   +  ELDL  +A FT+PAD S W+YH +LL
Sbjct:   32 MGVLLSRRAEGKLDDQQLVISGQVLQGNPDISTLWNIRKEILLHYIN-LGTQKEKDVGE---GEKGQEEVDCGKEENVPMHDQDEMLSSELDLTQQCLIANPKSYGAWHHRTWCLEHMINPDWSR-----ELALCRKFLKLDERNFHCWDYRKWVADKAGVKPQQELEFTLEKIEENFSNYSAWHYRSKLLPLLNPDTSSIQEDQVHKELDLVQNAAFTDPADSSAWFYHTWLL 256          
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: UPI000644DC6F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DC6F)

HSP 1 Score: 156 bits (395), Expect = 4.070e-39
Identity = 95/277 (34.30%), Postives = 140/277 (50.54%), Query Frame = 1
Query:   61 QLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLA-NALEPTPL 888
            Q+  K+L ++P+YY++WN+R++  L   + +      Q+                            +Y  E+    +CI+R  KSY  W+H KW     + +   +     +L LC+  L+LD RNFHC      V E+ GLP  +E+ +TT KI+QNFSNYSA+H RS ++P M  E     ++ L +E +L  +A+FTEP DQS W YH +L+      A   CD   Y+ V  AE   + ELIE+E  CKW    LL +   L  +A E  PL
Sbjct:   50 QVTKKVLEINPEYYTVWNYRRD-TLVYFATVKPNEDMQT----------------------------LYAAEMKFIEECIQRFTKSYWVWYHRKW-----ISVRQDKCDWERELKLCSKLLDLDLRNFHCWSYRRFVGEKSGLPLEKEYAYTTTKIEQNFSNYSAWHQRSALIPLMNTEP-QQLFEKLKEEFELVRNAVFTEPKDQSSWIYHKWLV--GTMKAIPGCD---YKEVFNAEVEAINELIEIEPDCKWPIYTLLTLKLDLGCDATELRPL 286          
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: A0A0M0JE27_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE27_9EUKA)

HSP 1 Score: 157 bits (398), Expect = 5.310e-39
Identity = 97/289 (33.56%), Postives = 139/289 (48.10%), Query Frame = 1
Query:   13 AIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAG--DLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDR----WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRL 861
            A   +RA    DA   + + K++  +PD+ +MWNFR+E VL  +    D  +R++                                E AL+ +C+  NPKSYP W+H +W L      L G        +L L A  L LD RNFHC      V    G+ A  E  FTT KI+ NFSNYSA+H+RSK+LP +   AG +       +L +EL+L  +A FT P D S W+YH +L+      A +      +E ++RAE   + EL+E+E  CKW   A   + + L
Sbjct:   32 AAMERRAAKVYDAASLEAVAKVVTENPDFATMWNFRRE-VLGHMFPDADVAARKAAC----------------------------LAEFALTQECLGINPKSYPVWYHREWVL------LWGECEWQWPVELKLTAKLLALDDRNFHCWTYRRNVVRVAGVTAEAELAFTTTKIQANFSNYSAWHYRSKLLPAVHASAGAEGAAQLGAVLRNELELVRNAFFTAPEDSSAWFYHRWLIAQLAPGAAAALPPAEFEALVRAELQMVDELLELEPECKWPLAAAAFLGRTL 285          
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: UPI000CEFEA1D (geranylgeranyl transferase type-2 subunit alpha-like n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=UPI000CEFEA1D)

HSP 1 Score: 152 bits (385), Expect = 3.510e-38
Identity = 87/235 (37.02%), Postives = 121/235 (51.49%), Query Frame = 1
Query:   13 AIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRM---VEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLL 708
            AI  KR TGQ+D E  +L  ++L ++PD+ ++WNFR+E +L  L   G     QS   G                            EL+    C++ NPKSY  WHH  W +E            A +L LCA FLE+D RNFHC      V +R  + A +E  FT   I +NFSNYS++H+RS++LPR+     + G     +L  EL+L  +A FT+P DQS W+YH +LL
Sbjct:   34 AIFEKRKTGQLDKEALELTNQILGVNPDFATLWNFRRE-ILLRLEPEGSPEEMQSLCRG----------------------------ELSFLESCLRVNPKSYGTWHHRCWVMEHV-----PHPDWARELELCAKFLEIDERNFHCWDYRRFVVQRAQVSAADELHFTDRLITRNFSNYSSWHYRSRLLPRLHPDPRQPGRPTEAVLLKELELVQNAFFTDPNDQSAWFYHRWLL 234          
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: A0A821PVZ3_9NEOB (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821PVZ3_9NEOB)

HSP 1 Score: 152 bits (383), Expect = 5.810e-38
Identity = 83/236 (35.17%), Postives = 124/236 (52.54%), Query Frame = 1
Query:   22 HKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRM---VEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAD 720
            +KR  GQ+D E  ++  ++L L+PD+ S+WN R+E  LA  S   D   R                              +Y  EL+   +C++ NPKSY  W+H  W ++   +        A +L LC  FLE+D RNFHC      VA+   +P  +E ++T+D I +NFSNYS++H+RSK+LP++    +  G     +L  EL+L  +A FT+P DQS W+YH +LL  AD
Sbjct:   37 NKRKGGQLDKEALEITAQILALNPDFASLWNLRREVFLALGSDRSDEEMRS-----------------------------LYLSELSFLQNCLRVNPKSYGTWYHRCWIMKHMPE-----PDWARELTLCNQFLEIDERNFHCWGYRRFVAQSFHVPPSDELEYTSDLITKNFSNYSSWHYRSKLLPQIHPDPQHLGRATENVLLSELELVQNAFFTDPNDQSAWFYHRWLLGRAD 238          
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: H3GF34_PHYRM (Geranylgeranyl transferase type-2 subunit alpha n=6 Tax=Phytophthora TaxID=4783 RepID=H3GF34_PHYRM)

HSP 1 Score: 152 bits (385), Expect = 1.190e-37
Identity = 100/331 (30.21%), Postives = 152/331 (45.92%), Query Frame = 1
Query:   64 LLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALEPTPLPPRSQDDRTNTGSGGITAAGNGSKEAAEVRESCRVMAARLSELDPMHGRFYEFVEK 1056
            L   LL L+P+++ +W++R++ + A   R  D  + +                             + + EL L++D ++RNPKSY AW   +W +++GL      + L  ++ LC   LELD RNFHC      V +  G+   ++  FTT KI+QNFSNYSA H RS  LP  +         +L DE+ L   A+FTEP DQS W+Y+ +LLT   +  +S          L+++   LGEL+E+E   KW  V +  +  RL    E                   +       K++ E+ E       R   LDP H R+YE + K
Sbjct:   54 LTSHLLLLNPEFHVVWSYRRQVIDALAKRAQDPAAERH---------------------------EMAKTELKLTLDALQRNPKSYSAWFQRRWIVDQGL------ADLKKEIGLCDKLLELDERNFHCWNYRRHVCKLAGVAEEDQLAFTTQKIEQNFSNYSALHHRSITLPEPLTA------DVLFDEIGLVQQAVFTEPDDQSAWFYYRWLLTSMVELVESSAGDA--VGFLKSQVQWLGELLEMETEAKWVVVTVADLHSRLGAITE-------------------VHGWEESKKQSVELYE-------RAIALDPDHRRYYEDMMK 317          
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Match: A0A8K1CD87_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD87_PYTOL)

HSP 1 Score: 152 bits (383), Expect = 2.590e-37
Identity = 97/338 (28.70%), Postives = 162/338 (47.93%), Query Frame = 1
Query:   28 RATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGGGXXXXXXXXXXXXXXXXXXXXXXVYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCXXXXXXVAERMGLPAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLGELIEVEGRCKWAEVALLLVSQRLANALEPTPLPPRSQDDRTNTGSGGITAAGNGSKEAAEVRESCRVMAARLSELDPMHGRFY 1041
            RA   + A    L   +L L+P+++ +W +R+E +L+ L +   + + ++                            + + EL L+ + I+R+PKSY +W   +W +++GL        L  ++ALC   L+LD RNFHC      V +  G+   +E  F T KI+QNFSNYSA H RS  LP+ +        ++L DE+ +   A+FTEP DQS W+Y+ +L+T   D   S  +       L ++   L EL+E+E   KW  V L  + +RL+ A        +++D+ +                A++ +E  RV   +L  +DP H ++Y
Sbjct:   42 RAQRVLAAHLLPLTSHVLLLNPEFHVIWGYRREILLSLLDKHAQSATEEA-----------------------MTPEEIAKTELKLTFEAIQRHPKSYSSWFQRQWIVDKGLC-----PDLKKEIALCNRLLDLDERNFHCWNYRRHVCQLAGVSREDELAFATLKIEQNFSNYSALHHRSITLPKPLTR------EILHDEIGIVQQAVFTEPDDQSAWFYYRWLVTSMLDVVQS--EPSEAVEFLDSQIQWLLELLEMESEAKWVLVTLADLQRRLSVA--------QTEDEAS----------------ASQAKEQSRVYYKQLLSVDPDHAQYY 319          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5946.16497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK31_ECTSI5.180e-21884.37Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A835Z1Z5_9STRA3.610e-6838.62Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A4SAM5_OSTLU1.570e-4137.93Geranylgeranyl transferase type-2 subunit alpha n=... [more]
UPI000C78249F1.150e-3936.32geranylgeranyl transferase type-2 subunit alpha-li... [more]
UPI000644DC6F4.070e-3934.30hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0M0JE27_9EUKA5.310e-3933.56Geranylgeranyl transferase type-2 subunit alpha n=... [more]
UPI000CEFEA1D3.510e-3837.02geranylgeranyl transferase type-2 subunit alpha-li... [more]
A0A821PVZ3_9NEOB5.810e-3835.17Geranylgeranyl transferase type-2 subunit alpha n=... [more]
H3GF34_PHYRM1.190e-3730.21Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A8K1CD87_PYTOL2.590e-3728.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5946contigEcto-sp13_S_contig5946:2808..7019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score602.4
Seed ortholog evalue1.3e-169
Seed eggNOG ortholog2880.D8LK31
Preferred nameRABGGTA
Model size2042
KEGG koko:K14050,ko:K20306
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0009987,GO:0010035,GO:0010038,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0022607,GO:0031267,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0042579,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
Exons6
EggNOG free text desc.protein geranylgeranylation
EggNOG OGsCOG5536@1,KOG0529@2759
Ec32 ortholog descriptionProtein prenyltransferase, alpha subunit
Ec32 orthologEc-06_007980.1
EC2.5.1.60
Cds size1074
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5946.16497.1prot_Ecto-sp13_S_contig5946.16497.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5946 3734..6977 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463826.2132592-UTR-Ecto-sp13_S_contig5946:2807..37331681463826.2132592-UTR-Ecto-sp13_S_contig5946:2807..3733Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5946 2808..3733 -
1681463826.290855-UTR-Ecto-sp13_S_contig5946:6977..70191681463826.290855-UTR-Ecto-sp13_S_contig5946:6977..7019Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5946 6978..7019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463826.2277927-CDS-Ecto-sp13_S_contig5946:3733..40271681463826.2277927-CDS-Ecto-sp13_S_contig5946:3733..4027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5946 3734..4027 -
1681463826.2390215-CDS-Ecto-sp13_S_contig5946:4517..46881681463826.2390215-CDS-Ecto-sp13_S_contig5946:4517..4688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5946 4518..4688 -
1681463826.2496254-CDS-Ecto-sp13_S_contig5946:5236..53531681463826.2496254-CDS-Ecto-sp13_S_contig5946:5236..5353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5946 5237..5353 -
1681463826.2639132-CDS-Ecto-sp13_S_contig5946:5588..57421681463826.2639132-CDS-Ecto-sp13_S_contig5946:5588..5742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5946 5589..5742 -
1681463826.2730227-CDS-Ecto-sp13_S_contig5946:6117..63561681463826.2730227-CDS-Ecto-sp13_S_contig5946:6117..6356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5946 6118..6356 -
1681463826.281952-CDS-Ecto-sp13_S_contig5946:6878..69771681463826.281952-CDS-Ecto-sp13_S_contig5946:6878..6977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5946 6879..6977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5946.16497.1

>prot_Ecto-sp13_S_contig5946.16497.1 ID=prot_Ecto-sp13_S_contig5946.16497.1|Name=mRNA_Ecto-sp13_S_contig5946.16497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=358bp
MDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIGDARSRQSGSDGG
GKVAEESSSGTLSPSAEEQQQKKVYEEELALSVDCIKRNPKSYPAWHHHK
WALERGLDLLGGRSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLP
AREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDL
THDAMFTEPADQSVWWYHHFLLTWADDSADSCCDSERYENVLRAEAATLG
ELIEVEGRCKWAEVALLLVSQRLANALEPTPLPPRSQDDRTNTGSGGITA
AGNGSKEAAEVRESCRVMAARLSELDPMHGRFYEFVEKGGTVIGGQQMRG
SAREADR*
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mRNA from alignment at Ecto-sp13_S_contig5946:2808..7019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5946.16497.1 ID=mRNA_Ecto-sp13_S_contig5946.16497.1|Name=mRNA_Ecto-sp13_S_contig5946.16497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5946:2808..7019- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTCGGTGCCATCCGCCACAAGAGGGCGACTGGGCAGATGGATGC GGAGTACAAGCAGCTCCTCGGGAAGCTCCTGCGCCTGCATCCAGACTACT ATTCCATGTGGAACTTCCGCAAGGAAGCGGTTCTGGCGGAGGTGAAAGAA GACCGGCAGGGGGGGGGGGGGGAGGTCGTTGGGGATAGATAGGAGAGGAA GGCAGGTGTAGACAGAACGGGACGCTCCCGGCCGGAGGGATCGGGAGATA TGAAGGGGGGAAGAGTGGAATGTATGAAGGAGAGTGTGAGGAAGAAAGAG ACGTTGTTGAGGGAGGGAGAGTCAAAGACAAACAGACAGAGATGAGCTAT CACGCAGACAAGGAACCACCGAATGGAAGTTTGAGGGTTGTCAACTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTCTATCCCTCTCT CTCTCTCTCAGCATCTCTCTCGGCTCTCTCGCTGCTTTCCCTTCCTCACC ATTCTTCTAGGCCCAACTAGTAGCCACACGTTCTAGCTACACCCACCGCT GCACCCCATCTCCTTTCGCGTTTGACCTTCCCCGTCAACATGCCCCAATC CCTTATCCACACAACACCGACGGCGGGCCCCTCCCACCTACCAACACTGC GATACGTGCACAGCTCTCTCGAATAGGAGACGCACGTAGCAGGCAAAGCG GGAGCGACGGCGGGGGTAAGGTGGCGGAGGAGAGCAGCAGCGGCACATTG TCGCCGTCTGCCGAGGAGCAGCAGCAGAAGAAGGTGTACGAGGAGGAGCT CGCGCTGAGCGTGGACTGCATTAAGCGCAATCCCAAGTCGTACCCGGCAT GGCACCACCACAAGTGGGCCTTGGAGAGAGGGTTGGACTTGTTGGGAGGG AGGTAAGGAAGGGGGGAGGGGGAGGGGGGGGCGGGGGGGGGCATCCCTGT GTGTGAAAGTGGAACGGGTGGGTTTTTGACGGATTCGTCAGGCGAGAGAG GTGGCGTCTATGGAAGAGAGGCGCCGGCCGTACGAATCCCACCGCAACAA TGCGGCAGTGCGTGGCCATTCCGAAGAGAGTGAAACGATGTAGAATGTGT TGCCACTCGTAGATTTGACGGACGAGGCCCCTTGCTCAGTGGCGCGGCCT TAGTCACGCACTTGTAGTTGTTCGTTCGTCTCTCGGCCTATATTCGGCTG GGATCCCCCCCTTCATCCGCCTCAACTTACTTCCAATACGTTTCACGGAG CGTGCCACCGTTTGTTACTCACGAAAGGTCGGCGCTTGCGGGGGATCTGG CTCTGTGCGCCACATTCTTGGAGCTGGACGGCAGAAATTTCCACTGCTGG GCGCATCGCATGTGGGTTGCGGAGCGGATGGGCCTCCCCGCGCGGGAAGA GTTCGACTTCACCACCGACAAAATAAAGCAGGTGAGGAAGGAGGCCGCAG GCAGGCAGACTCGTTGCCGCAAGCAGCAACTCGAGCAGTCCGAGAACGCG ACGGGTAGCGAGATCGACGACACACGCAATGTTGGTGGGTGTTCGTTGCT GTTCGAGCAAGGTAACAGTTCGGCCATCGAACTCACTTCTCGTTCTGACC TTGGCACATACCCCCCCCCCTCTGGTTCCCCACCGCCAACCCTCCCTGCT CACCGCGGCGGAACAGAACTTTAGCAACTACAGCGCGTTCCACTTCCGGA GTAAGGTTCTGCCGAGGATGGTGGAGGAGGCCGGCCACGACCGGTGGCAG CTGTTGTCCGACGAGCTAGATCTCACGCATGACGTGAGCGTTCTTGGCTT GTTACGCTACGCTGCAACAACAAACTGTACCTGTTCGAATCAGACGTTAC TGTACCTCGCATTTGCGGTTGTTTTTCTTTGGTGAGCCTGGTGCTCTTCA TTGGATACCTTCGTTCGATGTGTCTTGCAAGTGTTCGTGCAACGAGAGTG GGCATGGCTGCACGCCTGGTGTGTTTGTGTGTGTGCGTGTTTATTGTTTG CATCGACCATGCGAATCGGCCGACCGATGAAAAGACGTCAGCCTCAGTGC GGTTGAAAATACAAAACAGTTCTGAATGCCATGAAACTGGTGTGTGTGTG CGGGGGGGGTTACGTGTCATGTGTGATTTTTTTAAAGAACGGGCATCGAC CGGGCTACCGGTTGACCAATGAAAAAGGACGCCTGTCTTATGGTGTGTTG CGAGAGGGTGTGGCTTGTGTGTTGCGCTCCGCGTATTTTTAGCGAGTGCA TCGGGCAGGGGGTTCGCCCATTGAACCCAAAGTATCGCAACAAAGGATCC GACCTCCCCCTACGCGAACACTACACGACAGGCAATGTTCACGGAGCCGG CAGACCAGAGCGTCTGGTGGTACCACCACTTCCTCCTCACGTGGGCGGAC GACAGCGCCGACAGCTGCTGCGACTCGGAACGTTACGAGAACGTTCTCCG CGCGGAGGCGGCCACTCTGGGGGAGCTGATAGAGGTGGAGGGTCGGTGCA AGGTGCGTGTGTGTTTGCTCGCGCTTTTCTTTCGGTGCAGTAGTCTTGGT GCTGCCACGGGGGTGGGGGGCTTCTTCGAGGGTTGTAGGTTTAGCGTTCT GCGGCCGGTAGTTTGACTTGGAAGGCGTCTGTCGGCGGGGGGGCGGGAAC GGGGGCAGACCCGCCAGTCTTGCCTGAACTGGCGACGAACATCGGATCCA CTAGTCCTACCACAGCAGCAGTATAATTGAAGTATAATAGCAGCATCGGA ACAAGCGCTCAGAACGGCGGTGGTAGTACCCCCCCCCGCCCCCGTTTTCA CCTGTCTCCTTCCCGCCGCTGGTGCCAGCTCCTAAGTAAGTCCTCCGTGA TTAATTCTCGTATTTTGAATTATTGGTACTGCTTTAACCGTCTGTGATGA TTGTTTATCGTTGTAACACCTCCTATCGCCTTTTCTCTCGCCTGATCAAC GTCGCTCGCTGCTGTGCTACGCTCTGACCCCACTTCGAGCAGTGGGCCGA GGTCGCGCTCCTCCTGGTCTCCCAACGGCTCGCAAACGCCCTCGAACCAA CGCCACTACCGCCGCGAAGCCAGGACGACCGGACTAACACCGGCAGCGGA GGCATTACTGCGGCAGGGAACGGCAGCAAAGAGGCCGCCGAGGTCCGAGA GAGCTGCCGCGTCATGGCGGCACGTCTGTCAGAGCTGGACCCGATGCACG GCCGCTTCTACGAGTTTGTGGAGAAGGGCGGGACGGTGATCGGGGGACAG CAGATGCGAGGCTCGGCGCGCGAGGCAGACAGATAGGGGCTGGCATGACT AAGCGGCCGTTGCGCTTTAAGAAGGAATGGTATCCGGAGGGTGATCGGGG AGTGAGTTGTGCAAGGAAGATTGCGGAGACGGCAGGCGGTAAACGCAAGA AGCCCTACGGCTTTCAGAGTAGAAGCTGAGTAGGTGGTGAAGTCGATTTG ATTTGGGGTTTGCATGGATGGGCGCAAAGCGCCCACTGGACAACTCGAGC GGTTTGCTATCCTGCGGAATGAAACTGAGAAACTGCCTCGTTCAAGAACA CCACGGCTATTTGTCATTCGTTGGTCGCTTCCATTGGCCCTGAGACTGAA TGGATTTCACTCGTCGATCAAGAGAACGTCGTCCCGTTAAGGGCGTTGGG GATGGCGGACCCGAGGCTCTACCGAGCAGTAGAACCCGTGTCAAACTCGC ATGAGGAGGAGGACGGAGGCGACACTGTGGTGCGTGCCGTTGAAGGTGCA TCGGGTCTAGGGGCTCGTCCTGAGCAAGGCTTCAGAGAGTCCTTCATCCC GATACCCGGTGGACGCAGTGAAGCGGGGGAAGATTATGCAGCAGCGGCAT TTGGAGGACACTGCGGGGTACAGGGAAGAACGGGGGGAGAAGTTCGTCTA CCTTGCAATATCGGGGGCGGAAAGGGCCGCTGCGAGACGACACGCCTTTT GGTGGGGATCACCTGCTTTCCCTCTCTCTTTCCTTCCCGCGCAGCTATAT AGTCCAGTGTTCGGACAGTTGGGGTCGACTTCACCACGTCTCATATGAGA TTTGTGGATCGACCGGAGGGAGGAGCGCGCGCCTCGCTACCGTTTTGCGA GCCACAAAACGTTCCGCTATAGGGGACAGGACATAAGATTTAGGAGACGG TACGGGCGCAGTGCCGTGTCTTTCTCAACAACGACCCGGCCCGTACCAGT CTTGACCAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5946:2808..7019-

>mRNA_Ecto-sp13_S_contig5946.16497.1 ID=mRNA_Ecto-sp13_S_contig5946.16497.1|Name=mRNA_Ecto-sp13_S_contig5946.16497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5946:2808..7019- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGCGGAGTACAAGCAGCTCCTCGGGAAGCTCCTGCGCCTGCATCC
AGACTACTATTCCATGTGGAACTTCCGCAAGGAAGCGGTTCTGGCGGAGC
TCTCTCGAATAGGAGACGCACGTAGCAGGCAAAGCGGGAGCGACGGCGGG
GGTAAGGTGGCGGAGGAGAGCAGCAGCGGCACATTGTCGCCGTCTGCCGA
GGAGCAGCAGCAGAAGAAGGTGTACGAGGAGGAGCTCGCGCTGAGCGTGG
ACTGCATTAAGCGCAATCCCAAGTCGTACCCGGCATGGCACCACCACAAG
TGGGCCTTGGAGAGAGGGTTGGACTTGTTGGGAGGGAGGTCGGCGCTTGC
GGGGGATCTGGCTCTGTGCGCCACATTCTTGGAGCTGGACGGCAGAAATT
TCCACTGCTGGGCGCATCGCATGTGGGTTGCGGAGCGGATGGGCCTCCCC
GCGCGGGAAGAGTTCGACTTCACCACCGACAAAATAAAGCAGAACTTTAG
CAACTACAGCGCGTTCCACTTCCGGAGTAAGGTTCTGCCGAGGATGGTGG
AGGAGGCCGGCCACGACCGGTGGCAGCTGTTGTCCGACGAGCTAGATCTC
ACGCATGACGCAATGTTCACGGAGCCGGCAGACCAGAGCGTCTGGTGGTA
CCACCACTTCCTCCTCACGTGGGCGGACGACAGCGCCGACAGCTGCTGCG
ACTCGGAACGTTACGAGAACGTTCTCCGCGCGGAGGCGGCCACTCTGGGG
GAGCTGATAGAGGTGGAGGGTCGGTGCAAGTGGGCCGAGGTCGCGCTCCT
CCTGGTCTCCCAACGGCTCGCAAACGCCCTCGAACCAACGCCACTACCGC
CGCGAAGCCAGGACGACCGGACTAACACCGGCAGCGGAGGCATTACTGCG
GCAGGGAACGGCAGCAAAGAGGCCGCCGAGGTCCGAGAGAGCTGCCGCGT
CATGGCGGCACGTCTGTCAGAGCTGGACCCGATGCACGGCCGCTTCTACG
AGTTTGTGGAGAAGGGCGGGACGGTGATCGGGGGACAGCAGATGCGAGGC
TCGGCGCGCGAGGCAGACAGATAG
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