mRNA_Ecto-sp13_S_contig5945.16495.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5945.16495.1
Unique NamemRNA_Ecto-sp13_S_contig5945.16495.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5945.16495.1 vs. uniprot
Match: D7FZ24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ24_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.080e-7
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:   84 MRSRASCEDRSAEKDIGVLLHTQQLSPPVGHAGS 185
            MR+RAS  +RSAEK   VLLHTQQLSPPVGH  S
Sbjct:    1 MRARASGRERSAEKYTSVLLHTQQLSPPVGHERS 34
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5945.16495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ24_ECTSI2.080e-773.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5945contigEcto-sp13_S_contig5945:4725..4909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size185
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_004360.1
Cds size102
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463826.112069-UTR-Ecto-sp13_S_contig5945:4724..48071681463826.112069-UTR-Ecto-sp13_S_contig5945:4724..4807Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5945 4725..4807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463826.1231701-CDS-Ecto-sp13_S_contig5945:4807..49091681463826.1231701-CDS-Ecto-sp13_S_contig5945:4807..4909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5945 4808..4909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5945.16495.1prot_Ecto-sp13_S_contig5945.16495.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5945 4808..4909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5945.16495.1

>prot_Ecto-sp13_S_contig5945.16495.1 ID=prot_Ecto-sp13_S_contig5945.16495.1|Name=mRNA_Ecto-sp13_S_contig5945.16495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
MRSRASCEDRSAEKDIGVLLHTQQLSPPVGHAGS
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mRNA from alignment at Ecto-sp13_S_contig5945:4725..4909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5945.16495.1 ID=mRNA_Ecto-sp13_S_contig5945.16495.1|Name=mRNA_Ecto-sp13_S_contig5945.16495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5945:4725..4909+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGCGGTCGAATGTGGTTGCTGTTCTCTGTGCTATGTTGTTTGGTGAA
TTGTAACCGCTTTAGGTCAGGCCCAAAAAAATAATGAGATCGAGAGCGAG
CTGTGAAGACAGGAGTGCAGAGAAAGACATCGGTGTACTTCTGCACACGC
AACAGCTATCTCCACCTGTAGGCCATGCGGGGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5945:4725..4909+

>mRNA_Ecto-sp13_S_contig5945.16495.1 ID=mRNA_Ecto-sp13_S_contig5945.16495.1|Name=mRNA_Ecto-sp13_S_contig5945.16495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5945:4725..4909+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGATCGAGAGCGAGCTGTGAAGACAGGAGTGCAGAGAAAGACATCGG
TGTACTTCTGCACACGCAACAGCTATCTCCACCTGTAGGCCATGCGGGGA
GC
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