mRNA_Ecto-sp13_S_contig5940.16491.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5940.16491.1
Unique NamemRNA_Ecto-sp13_S_contig5940.16491.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 8.970e-84
Identity = 232/401 (57.86%), Postives = 266/401 (66.33%), Query Frame = 1
Query:    1 GPNRISCLNALVVALDETCDGKRWYTSTKELQLASIEFCIACRKHQTLHLIVDTEIPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWDMPTAAELRKPLFAMTDVDCLEFGDDFEGSLEALAWPKRLKTIEFVATSGFNKPINLVQWPASLQRLEFGGSFFQSIEDAKFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELAKQVXXXXXXXXXXXXXXXXXXXEGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGVGRGGMIMRSEFNXXXXXXXXXXXXXXXXXXHKFRQSLQGLGTWMPNLESLRLLEWYVDSQNES-LLRRIEWPKGLLQLTVFKDSSLEDVEIPATVEVLRRYN 1200
            GP R  CL AL+VAL+ETCDGK WYTSTKELQLAS++FCIACR  QT+HL VD +IPRRLLA+ADAPPPHPKRLC TRVPRLR+RRVTW+MPTAA+LR P+FAMTD++ LEFGD F  SLEA+ WP+ L+T+EF   S F++ I LVQWP  LQ + FGG F Q IE  KFP              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXX    XXXXXXXXXX                               GM++ + F+                  H FRQSLQGLGTWMPNLE L LL ++     +S  LR IEWPKGL  LT+ + +S++ V+IP  V+VL  YN
Sbjct:   45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIERVKFPASLQQLIFRTSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGNRLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWCDEFAGN----------------------GMVIFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLLHYHGSGLGDSNFLREIEWPKGLRHLTLLEGTSIDGVDIPLAVQVLFAYN 423          
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 1.150e-71
Identity = 110/156 (70.51%), Postives = 129/156 (82.69%), Query Frame = 1
Query:   19 CLNALVVALDETCDGKRWYTSTKELQLASIEFCIACRKHQTLHLIVDTEIPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWDMPTAAELRKPLFAMTDVDCLEFGDDFEGSLEALAWPKRLKTIEFVATSGFNKPINLVQWPASLQRLEFGGSF 486
            CL++L+VAL+ETCDG  WYTSTKELQ AS+EFCIACR +  +HL VD +IPR LLAAADAPPPHPKRLC TRVPRLRAR VTW+M  AAEL  P+FA+TDVDCLEFG  F+GSLEA+ WP+RLK IEF+ TS FN+P+ L++WP SLQ L  GG F
Sbjct:   14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQHLVLGGDF 169          
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 4.890e-69
Identity = 211/404 (52.23%), Postives = 236/404 (58.42%), Query Frame = 1
Query:    1 GPNRISCLNALVVALDETCDGKRWYTSTKELQLASIEFCIACRKHQTLHLIVDTEIPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWDMPTAAELRKPLFAMTDVDCLEFGDDFEGSLEALAWPKRLKTIE---------FVATSGFNKPINLVQWPASLQRLEFGGSFFQSIEDAKFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELAKQVXXXXXXXXXXXXXXXXXXXEGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGVGRGGMIMRSEFNXXXXXXXXXXXXXXXXXXHKFRQSLQGLGTWMPNLESLRLLEWYVDSQNE-SLLRRIEWPKGLLQLTVFKDSSLEDVEIPATVE 1182
            GP R SCLNA++VAL+ET DGK WYTSTKE QLAS+EFCIACR HQTL L VD+  PRRLLAAADAPPPHPKRLC TRVPRLRARRVTWD+PTAA LR  +++M D D LEF   FE SLEA+AWP+RLKT+E         F   S F++PI  V WP +L++L FG                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXX        + VL                                        G +++ S+FN X                  FRQSLQ LGTWMPNLE+  LL    DS  E S LR IEWPKGL QL V + SSL  V IP+TVE
Sbjct:    6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFG------------------------------LFLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVCFGVRQEVL----------------------------------------GDVVVTSKFNRXIGASAWPKAMHRLTLGQNFRQSLQELGTWMPNLETFHLLHHIHDSGTEDSFLRGIEWPKGLRQLAVCRLSSLAGVVIPSTVE 339          
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 1.600e-63
Identity = 111/156 (71.15%), Postives = 128/156 (82.05%), Query Frame = 1
Query:    1 GPNRISCLNALVVALDETCDGKRWYTSTKELQLASIEFCIACRKHQTLHLIVDTEIPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWDMPTAAELRKPLFAMTDVDCLEFGDDFEGSLEALAWPKRLKTIEFVATSGFNKPINLVQWPASLQRL 468
            GP   +CLNA+ VAL ET DGK WYTSTKELQLAS+EFC+ACR +QTLHLIVD  IPR LLAAAD PP HPKRL R RVPRLRAR VTW+MPTAAELR P+FA+ D+D L+FG  FEGSLEA+ WP+RL++I F   S FN PI+LV+WPASL+RL
Sbjct:   30 GPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLKRL 185          
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 3.560e-63
Identity = 109/166 (65.66%), Postives = 128/166 (77.11%), Query Frame = 1
Query:    1 GPNRISCLNALVVALDETCDGKRWYTSTKELQLASIEFCIACRKHQTLHLIVDTEIPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWDMPTAAELRKPLFAMTDVDCLEFGDDFEGSLEALAWPKRLKTIEFVATSGFNKPINLVQWPASLQRLEFGGSFFQSI 498
            GP R SCL  L VAL+ETCDGK WYTSTKELQLAS+E C+ACR +QTLHL VD   PRRLLAAADAP PHPKRLC TRVPRLRARR TW++PTA+ +R  +FA  DVD LEFG  F GSL+A+ WP+RLKTIEF  +S  N+ ++ V WPASL+++  G  F Q I
Sbjct:  130 GPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCLGHDFNQPI 295          
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 8.000e-59
Identity = 278/414 (67.15%), Postives = 301/414 (72.71%), Query Frame = 1
Query:   55 CDGKRWYTSTKELQLASIEFCIACRKHQTLHLIVDTEIPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWDMPTAAELRKPLFAMTDVDCLEFGDDFEGSLEALAWPKRLKTIEFVATSGFNKPINLVQWPASLQRLEFGGSFFQSIEDAKFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELAKQVXXXXXXXXXXXXXXXXXXXEGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGV-----------------------------GRGGMIMRSEFNXXXXXXXXXXXXXXXXXXHKFRQSLQGLGTWMPNLESLRLLEWYVDSQNE-SLLRRIEWPKGLLQLTVFKDSSLEDVEIPATVEVLRRYNAS 1206
            CDGKRWYTSTKELQ AS+EFCIACRK+QTL L VD + PR LLAA DAP PH KR CRTRVPRLRARRV W+MPTA EL+ P+FA+ DV  L+FG  FEGSLE++AWP+RLK I+F   S FN+PI  V++P SL  L         + DA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    + XXXXXXXXXXXXXXXXXX E   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                G    IM SEF XXXXXXXXXXXXXX    HKFRQSLQGLGTW+PNLE    L+    S +E SLLR IEWP GL QL VF+DS L+ V IP+TVEV R  N S
Sbjct:    2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSLLELR--------LSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRSRXXXXXXXXXXXXXXXXXXXGEAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHESQGFDHAIMFSEFXXXXXXXXXXXXXXXLTLGHKFRQSLQGLGTWIPNLEIFHFLDHSNGSGDEDSLLRGIEWPTGLRQLAVFRDSRLDGVIIPSTVEVSRLCNES 407          
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 6.080e-55
Identity = 107/177 (60.45%), Postives = 126/177 (71.19%), Query Frame = 1
Query:    1 GPNRISCLNALVVALDETCDGKRWYTSTKELQLASIEFCIACRKHQTLHLIVDTEIPRRLLAAADAPPPHPKR-LCRTRVPRLRARRVTWDMPTA--AELRKP--LFAMTDVDCLEFGDDFEGSLEALAWPKRLKTIEFVATSGFNKPINLVQWPASLQRLEFGGSFFQSIEDAKFP 516
            GP R SCLNA+VVAL ETCDGK WYTSTKELQLAS+ FC ACR HQT+HL VD  IPRRLLAAADAPPP  +  +  TR P   A   + D+  A  + + +P  +FAMTDVD LEFG DFEG+LEA+AWP+ LKTI+    S F KPI+L++WP SLQ LEFG  F+Q I     P
Sbjct:  130 GPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSA---SCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQTLEFGWEFYQPIYRVNVP 303          
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 5.340e-54
Identity = 240/387 (62.02%), Postives = 264/387 (68.22%), Query Frame = 1
Query:   31 LVVALDETCDGKRWYTSTKELQLASIEFCIACRKHQTLHLIVDTEIPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWDMPTAAELRKPLFAMTDVDCLEFGDDFEGSLEALAWPKRLKTIEFVATSGFNKPINLVQWPASLQRLEFGGSFFQSIEDAKFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELAKQVXXXXXXXXXXXXXXXXXXXEGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-------GVGRGGMIMRSEFNXXXXXXXXXXXXXXXXXXHKFRQSLQGLGTWMPNLESLRLLEWYVDSQNESLLRRIEWPKGLLQLTVFKDSSLEDVEIP 1170
            L++AL+E CDGKRWYTSTKELQLAS+EFC+ACRK+Q L L VD + PR LLAA DAPPPH KR CRTRVPRLRARRV W+MPTA ELR  +FA+ DV+CL FG  F GSLEA+ WP  LK I F + S FN+        ASLQ+L+   S           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXX      XXXX     XXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        G G    +M S FN                  HKF++SLQGLGT MPNLE+  LL+    S +E  LR IEWPK L  L VF +SSL+ V IP
Sbjct:   21 LILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIFFS-SEFNQXXXXXXXXASLQKLDLENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLKEDVEXXXXXXXXXXXXXXXXXXEWATFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMHDGEGFENAVMLSAFNQRVDMCEWPVSMRRLTLGHKFKESLQGLGTRMPNLEAFHLLDHRNGSGSEDSLRGIEWPKVLRHLVVFSNSSLDGVVIP 406          
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 6.780e-53
Identity = 95/123 (77.24%), Postives = 107/123 (86.99%), Query Frame = 1
Query:    1 GPNRISCLNALVVALDETCDGKRWYTSTKELQLASIEFCIACRKHQTLHLIVDTEIPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWDMPTAAELRKPLFAMTDVDCLEFGDDFEGSLEAL 369
            GP+R SCLNALV+AL+ETC+G+ WYTSTKELQLAS+EFC+ACR +QTLHL VD +IPRRLLA ADAPPPHP+ LCRTRVPRLRARRVTW M  AAEL  P+FAMTDVDCL+FG   E SLEAL
Sbjct:  107 GPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG---ETSLEAL 226          
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Match: D8LCG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 6.460e-40
Identity = 75/100 (75.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:  910 MIMRSEFNXXXXXXXXXXXXXXXXXXHKFRQSLQGLGTWMPNLESLRLLEWYVDSQNESLLRRIEWPKGLLQLTVFKDSSLEDVEIPATVEVLRRYNASL 1209
            MIMRSEFN                  HKFRQSLQGLGTWMPNLESLRLLEWYVD QN+SLLRRIEWPKGLLQLTVFK+SSLEDV IPA VEVL RYN SL
Sbjct:    1 MIMRSEFNQRIGRSAWPPSLRRLTLGHKFRQSLQGLGTWMPNLESLRLLEWYVDLQNDSLLRRIEWPKGLLQLTVFKESSLEDVGIPAPVEVLHRYNESL 100          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5940.16491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRF9_9PHAE8.970e-8457.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH81_ECTSI1.150e-7170.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUA5_9PHAE4.890e-6952.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE1.600e-6371.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE3.560e-6365.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYF0_9PHAE8.000e-5967.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI6.080e-5560.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRK5_9PHAE5.340e-5462.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI6.780e-5377.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCG0_ECTSI6.460e-4075.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5940contigEcto-sp13_S_contig5940:5719..6996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1215
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_004870.2
Cds size1215
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.8823383-CDS-Ecto-sp13_S_contig5940:5718..64251681463825.8823383-CDS-Ecto-sp13_S_contig5940:5718..6425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5940 5719..6425 +
1681463825.8967943-CDS-Ecto-sp13_S_contig5940:6488..69961681463825.8967943-CDS-Ecto-sp13_S_contig5940:6488..6996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5940 6489..6996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5940.16491.1prot_Ecto-sp13_S_contig5940.16491.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5940 5719..6996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5940.16491.1

>prot_Ecto-sp13_S_contig5940.16491.1 ID=prot_Ecto-sp13_S_contig5940.16491.1|Name=mRNA_Ecto-sp13_S_contig5940.16491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=405bp
GPNRISCLNALVVALDETCDGKRWYTSTKELQLASIEFCIACRKHQTLHL
IVDTEIPRRLLAAADAPPPHPKRLCRTRVPRLRARRVTWDMPTAAELRKP
LFAMTDVDCLEFGDDFEGSLEALAWPKRLKTIEFVATSGFNKPINLVQWP
ASLQRLEFGGSFFQSIEDAKFPPSLHDLTFFAGFNHPIGGATLPSSLQKL
DLGSNFNHPIENVAWPPSLDQLAFGEDFNQPIELAKQVAWPNSLEKLAFG
ICFNQPIEGVLWPDSLRRLSFGTCFDQSVDNVKWPASLQELTIGYCLGVG
RGGMIMRSEFNQRIGSSAWPASLQRLTLGHKFRQSLQGLGTWMPNLESLR
LLEWYVDSQNESLLRRIEWPKGLLQLTVFKDSSLEDVEIPATVEVLRRYN
ASLG*
back to top

mRNA from alignment at Ecto-sp13_S_contig5940:5719..6996+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5940.16491.1 ID=mRNA_Ecto-sp13_S_contig5940.16491.1|Name=mRNA_Ecto-sp13_S_contig5940.16491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5940:5719..6996+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACCCAATCGCATCTCGTGCTTGAACGCCCTTGTCGTTGCTCTGGATGA GACGTGCGATGGGAAGAGGTGGTACACGTCGACCAAGGAGCTGCAGCTGG CGTCCATAGAGTTCTGCATCGCGTGCAGAAAGCATCAAACGTTGCACTTG ATCGTCGACACAGAAATCCCGCGAAGGCTGCTGGCCGCTGCAGATGCCCC ACCTCCGCACCCGAAGCGGCTATGCCGGACGCGCGTGCCAAGGTTGAGAG CGCGCCGCGTGACGTGGGACATGCCGACAGCAGCGGAACTGAGGAAACCT CTCTTCGCAATGACGGACGTGGACTGCCTGGAGTTTGGCGATGACTTTGA AGGAAGTCTTGAGGCTCTGGCATGGCCTAAAAGGCTGAAAACGATCGAGT TTGTCGCAACTTCAGGATTCAACAAGCCTATCAACCTGGTACAATGGCCA GCATCTCTTCAAAGGCTTGAATTCGGTGGGAGTTTTTTCCAATCAATCGA AGATGCCAAATTTCCACCATCGCTGCACGATCTCACTTTCTTCGCCGGAT TCAACCATCCTATTGGAGGAGCCACTCTGCCGAGTTCACTGCAGAAGCTT GACCTGGGTTCAAACTTCAATCATCCCATAGAAAATGTCGCGTGGCCGCC GTCCTTGGATCAGCTCGCTTTTGGCGAAGACTTCAACCAGCCGATCGAAC TGGCCAAGTTCCCGGCATCGCTGAAGCATCTCACGTTCGACGCCTTTTCG GAATTCGACCAATCAATAAGGCAAGTGGCGTGGCCGAACTCGTTGGAGAA GCTCGCGTTCGGAATTTGTTTCAACCAGCCGATTGAAGGCGTTTTGTGGC CAGATTCGCTTCGAAGACTTTCTTTCGGAACTTGCTTTGACCAGTCAGTC GACAATGTAAAGTGGCCCGCGTCGTTGCAAGAGCTGACAATTGGATATTG CCTTGGAGTAGGGCGCGGTGGGATGATCATGCGATCGGAGTTCAACCAGC GTATCGGCAGCAGTGCTTGGCCTGCGTCGCTTCAGCGACTCACTCTAGGC CACAAGTTCAGGCAGTCACTGCAAGGACTCGGCACATGGATGCCCAACCT TGAATCACTACGTCTTCTAGAGTGGTATGTTGACTCACAAAACGAAAGCC TCCTCCGCCGAATCGAATGGCCTAAGGGCCTCCTTCAGCTGACTGTGTTC AAGGACTCGAGCTTGGAAGATGTCGAAATTCCTGCAACTGTAGAGGTATT GCGCCGTTACAACGCGTCCCTAGGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5940:5719..6996+

>mRNA_Ecto-sp13_S_contig5940.16491.1 ID=mRNA_Ecto-sp13_S_contig5940.16491.1|Name=mRNA_Ecto-sp13_S_contig5940.16491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5940:5719..6996+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACCCAATCGCATCTCGTGCTTGAACGCCCTTGTCGTTGCTCTGGATGA
GACGTGCGATGGGAAGAGGTGGTACACGTCGACCAAGGAGCTGCAGCTGG
CGTCCATAGAGTTCTGCATCGCGTGCAGAAAGCATCAAACGTTGCACTTG
ATCGTCGACACAGAAATCCCGCGAAGGCTGCTGGCCGCTGCAGATGCCCC
ACCTCCGCACCCGAAGCGGCTATGCCGGACGCGCGTGCCAAGGTTGAGAG
CGCGCCGCGTGACGTGGGACATGCCGACAGCAGCGGAACTGAGGAAACCT
CTCTTCGCAATGACGGACGTGGACTGCCTGGAGTTTGGCGATGACTTTGA
AGGAAGTCTTGAGGCTCTGGCATGGCCTAAAAGGCTGAAAACGATCGAGT
TTGTCGCAACTTCAGGATTCAACAAGCCTATCAACCTGGTACAATGGCCA
GCATCTCTTCAAAGGCTTGAATTCGGTGGGAGTTTTTTCCAATCAATCGA
AGATGCCAAATTTCCACCATCGCTGCACGATCTCACTTTCTTCGCCGGAT
TCAACCATCCTATTGGAGGAGCCACTCTGCCGAGTTCACTGCAGAAGCTT
GACCTGGGTTCAAACTTCAATCATCCCATAGAAAATGTCGCGTGGCCGCC
GTCCTTGGATCAGCTCGCTTTTGGCGAAGACTTCAACCAGCCGATCGAAC
TGGCCAAGCAAGTGGCGTGGCCGAACTCGTTGGAGAAGCTCGCGTTCGGA
ATTTGTTTCAACCAGCCGATTGAAGGCGTTTTGTGGCCAGATTCGCTTCG
AAGACTTTCTTTCGGAACTTGCTTTGACCAGTCAGTCGACAATGTAAAGT
GGCCCGCGTCGTTGCAAGAGCTGACAATTGGATATTGCCTTGGAGTAGGG
CGCGGTGGGATGATCATGCGATCGGAGTTCAACCAGCGTATCGGCAGCAG
TGCTTGGCCTGCGTCGCTTCAGCGACTCACTCTAGGCCACAAGTTCAGGC
AGTCACTGCAAGGACTCGGCACATGGATGCCCAACCTTGAATCACTACGT
CTTCTAGAGTGGTATGTTGACTCACAAAACGAAAGCCTCCTCCGCCGAAT
CGAATGGCCTAAGGGCCTCCTTCAGCTGACTGTGTTCAAGGACTCGAGCT
TGGAAGATGTCGAAATTCCTGCAACTGTAGAGGTATTGCGCCGTTACAAC
GCGTCCCTAGGGTGA
back to top