mRNA_Ecto-sp13_S_contig594.16489.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Match: D8LNR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR1_ECTSI) HSP 1 Score: 276 bits (707), Expect = 8.560e-90 Identity = 142/149 (95.30%), Postives = 146/149 (97.99%), Query Frame = 2
Query: 86 MEASSYTLPAAFCFIAVQLTFQASRQATPKRPKRGKVKGGGTSQQQRQAQQGSTATSQGVYLPTDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLACERYL 532
MEASSYTLPAAFCFIAVQLTFQA+RQATPKRPKRGKVKGGGT+Q+Q+QA QGS ATSQGVYLPTDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALS VGSCGDVPCAIDVREVSPFLAGLACERYL
Sbjct: 1 MEASSYTLPAAFCFIAVQLTFQATRQATPKRPKRGKVKGGGTTQRQQQAPQGSAATSQGVYLPTDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSFVGSCGDVPCAIDVREVSPFLAGLACERYL 149
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Match: UPI00165AE3F6 (ribonuclease P protein subunit p14 isoform X1 n=2 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165AE3F6) HSP 1 Score: 68.9 bits (167), Expect = 1.990e-10 Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 2
Query: 281 VAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGL 514
V KTFI+A +K LHGEVG+ A VDVL +D + LRVP+R LV + ++L+L GS + CA V +VSPFL L
Sbjct: 61 VELKTFIIACLKGLHGEVGA-ALNVDVLKYDEETLSALLRVPSRGLVKLWSSLTLQGSYKNQTCAFRVLQVSPFLLAL 137
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Match: A0A4W3J7P9_CALMI (Uncharacterized protein n=5 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3J7P9_CALMI) HSP 1 Score: 64.7 bits (156), Expect = 4.230e-9 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 2
Query: 281 VAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 517
V FK I+AA++DLHGE+G+ A PVDVL+++ LRV R LV + +AL+L+G CA V +VSPFL L+
Sbjct: 40 VQFKHLIVAALRDLHGEIGA-ALPVDVLTFEEEILSAILRVQNRGLVKLWSALTLLGCYQGQKCAFRVLQVSPFLLALS 117
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Match: UPI0004574E47 (ribonuclease P protein subunit p14 isoform X1 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=UPI0004574E47) HSP 1 Score: 64.7 bits (156), Expect = 6.360e-9 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 2
Query: 281 VAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 517
V FK I+AA++DLHGE+G+ A PVDVL+++ LRV R LV + +AL+L+G CA V +VSPFL L+
Sbjct: 58 VQFKHLIVAALRDLHGEIGA-ALPVDVLTFEEEILSAILRVQNRGLVKLWSALTLLGCYQGQKCAFRVLQVSPFLLALS 135
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Match: UPI001F047F46 (ribonuclease P protein subunit p14-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F047F46) HSP 1 Score: 63.5 bits (153), Expect = 9.800e-9 Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 2
Query: 281 VAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 517
V K+FI++AVK LHG VGS +D+L D +GE LRV + +LV + ++L+L+ D C +V++VSP+L LA
Sbjct: 37 VQLKSFIVSAVKQLHGSVGSSTV-IDILKVDKRNGEIILRVKSSNLVKLWSSLTLINKYNDNACRFNVQQVSPYLMSLA 114
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Match: UPI0007F8D296 (ribonuclease P protein subunit p14 n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=UPI0007F8D296) HSP 1 Score: 62.0 bits (149), Expect = 3.480e-8 Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 2
Query: 275 TDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGL 514
+DV K+FI+A +K LHGEVG+ A DVL +D S LRV +R LV + ++L+L G + CA V +VSP+L L
Sbjct: 40 SDVELKSFIIAGLKSLHGEVGA-ALNFDVLKYDEESLTALLRVYSRGLVKLWSSLTLQGFYQNQACAFRVLQVSPYLLAL 118
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Match: UPI001ABDDCD8 (ribonuclease P protein subunit p14-like isoform X2 n=2 Tax=Bufo TaxID=8383 RepID=UPI001ABDDCD8) HSP 1 Score: 62.0 bits (149), Expect = 6.980e-8 Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 2
Query: 287 FKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 517
FK+FIL+A+K+LHGEVG+ + P+D+L +D + LR+ + LV + +L+L+G C++ V + SPFL LA
Sbjct: 76 FKSFILSALKELHGEVGA-SIPLDLLKFDGQTLYAILRIKSSGLVKLWTSLTLLGQYQGHQCSVRVLQTSPFLLALA 151
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Match: H2MDH7_ORYLA (Ribonuclease P/MRP subunit p14 n=5 Tax=Oryzias TaxID=8089 RepID=H2MDH7_ORYLA) HSP 1 Score: 60.8 bits (146), Expect = 1.060e-7 Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 2
Query: 281 VAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGL 514
V K FI+A +K+LHGEVG+ A DVL +D S LRV + LV + ++L+L+GS + CA V +VSPFL L
Sbjct: 50 VELKHFIIAGLKNLHGEVGA-ALNFDVLKYDEGSLTALLRVHSSGLVKLWSSLTLLGSYQNQSCAFRVLQVSPFLLAL 126
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Match: UPI001AACA93D (ribonuclease P protein subunit p14-like isoform X2 n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AACA93D) HSP 1 Score: 60.5 bits (145), Expect = 1.240e-7 Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 2
Query: 257 QGVYLPTDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 517
+GV L T +K+ I++AVK+LHGEVG+ + P+D+L +D + LR+ + V + +L+L+G + C+I V +VSPFL LA
Sbjct: 36 EGVKL-TAAQYKSLIVSAVKELHGEVGA-SCPLDLLKYDDKTLSAILRINSSGFVKLWTSLTLLGHYQNQECSIRVLQVSPFLLALA 120
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Match: UPI0008550BAE (ribonuclease P protein subunit p14 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008550BAE) HSP 1 Score: 58.5 bits (140), Expect = 5.830e-7 Identity = 33/87 (37.93%), Postives = 56/87 (64.37%), Query Frame = 2
Query: 257 QGVYLPTDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSLVGSCGDVPCAIDVREVSPFLAGLA 517
+GV L T +K+ I++AVK+LHGEVG+ + P+D+L ++ + LR+ + V + +L+L+G + C++ V +VSPFL LA
Sbjct: 36 EGVKL-TAAQYKSLIVSAVKELHGEVGA-SCPLDLLKYEEKTLSAILRIRSSGFVKLWTSLTLLGQYQNQACSVCVIQVSPFLLALA 120 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig594.16489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig594.16489.1 >prot_Ecto-sp13_S_contig594.16489.1 ID=prot_Ecto-sp13_S_contig594.16489.1|Name=mRNA_Ecto-sp13_S_contig594.16489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp MEASSYTLPAAFCFIAVQLTFQASRQATPKRPKRGKVKGGGTSQQQRQAQback to top mRNA from alignment at Ecto-sp13_S_contig594:14600..17217- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig594.16489.1 ID=mRNA_Ecto-sp13_S_contig594.16489.1|Name=mRNA_Ecto-sp13_S_contig594.16489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig594:14600..17217- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig594:14600..17217- >mRNA_Ecto-sp13_S_contig594.16489.1 ID=mRNA_Ecto-sp13_S_contig594.16489.1|Name=mRNA_Ecto-sp13_S_contig594.16489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig594:14600..17217- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |