mRNA_Ecto-sp13_S_contig59384.16487.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59384.16487.1
Unique NamemRNA_Ecto-sp13_S_contig59384.16487.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.730e-34
Identity = 68/113 (60.18%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 SGTATPSNSTRQFEDIVRLELDAFKTTPGVDMSSYDKEGKVVLGDPLLWWRIKAREYPMLAALARRVLCIPPSQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVLPKV 339
            S  A+ S   RQ E I+  E+DAFK TPG+ +S ++++G+ V G PL WWR+KAREYP LA+LARRVLCIP  QA SERVFS+AG VVT TR+R+DPE+V LMVFLR+  P++
Sbjct:  436 SANASSSPLRRQMESIISREVDAFKITPGLAVS-WEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNTPPEL 547          
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.380e-24
Identity = 59/101 (58.42%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   34 QFEDIVRLELDAFKTTPGV---DMSSYDKEGKVVLGDPLLWWRIKAREYPMLAALARRVLCIPPSQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLRSV 327
            Q   IV +E+ AFK  PG+   DM   +   K V  +PL  WR K  EYP+LAALARRVL IP SQA SERVFS AG  VTPTRSRL  E+VEL+V+LR+V
Sbjct:  446 QLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNV 546          
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Match: UPI0019625210 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Perca fluviatilis TaxID=8168 RepID=UPI0019625210)

HSP 1 Score: 84.7 bits (208), Expect = 1.230e-17
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    7 TATPSNSTRQFEDIVRLELD-----AFKTTPGVDMSSYDKEGKVVL-GDPLLWWRIKAREYPMLAALARRVLCIPPSQAHSERVFSAAGQVVTPTRSRLDPEHVELMVF 315
            TA PS+     E  + L L      A  T P +++ +Y K+ +  L  +PL WWR     +P LA LA+R LCIP +   SERVFSAAG VV   R+RL PEHV+++VF
Sbjct:  142 TAGPSSGASHKESAMSLLLGDDYSAADATDPQLEVDTYVKDSRSSLESNPLDWWRANQTRFPRLARLAQRYLCIPGTSVPSERVFSAAGLVVNRLRTRLTPEHVDMLVF 250          
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Match: UPI000CD5E11D (zinc finger BED domain-containing protein 1-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD5E11D)

HSP 1 Score: 86.7 bits (213), Expect = 1.660e-17
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    7 TATPSNSTRQFEDIVRLELD-----AFKTTPGVDMSSYDKEGKVVL-GDPLLWWRIKAREYPMLAALARRVLCIPPSQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFL 318
            TA PS+     E+ + L L      A  T P +++ +Y K+ +  L  +PL WWR     +P LA LA+R LCIP +   SERVFSAAG VV   R+RL PEHV+++VFL
Sbjct:  488 TAGPSSGASHKENAMSLLLGDDYSAADATDPQMEVDTYVKDSRPSLESNPLDWWRANQTRFPRLARLAQRYLCIPGTSVPSERVFSAAGLVVNRLRTRLTPEHVDMLVFL 597          
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.050e-16
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 SGTATPSNSTRQFEDIVRLELDAFKTTPGVDMSSYDKEGKVVLGDPLLWWRIKAREYPMLAALARRVLCIPPSQAHSERV 240
            +G  T      Q   +V LE+ +F+TTPG+ +  +  +GK V  DPL WWR +  E+P LAALARRVL IP SQAHSERV
Sbjct:  470 AGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Match: UPI001C04A074 (E3 SUMO-protein ligase ZBED1-like n=3 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C04A074)

HSP 1 Score: 84.0 bits (206), Expect = 1.470e-16
Identity = 49/123 (39.84%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   10 ATPSNSTRQFED-IVRLELDAFKTTPGV-----------DMSSYDKEGKVVLGD-PLLWWRIKAREYPMLAALARRVLCIPPSQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVLPKV 339
            ATP +  R  E  +V L   A+ + P             +++ Y +   ++L D PL WW+  A EYP+LA LARR LC+P +   SERVFS AG +VT  RS L P+HV+ ++FL+  L  V
Sbjct:  498 ATPPSPKRLRESALVTLLGSAYASKPATSQKTPAEEAQEEVNRYREVKPILLSDNPLTWWKAHAGEYPLLACLARRYLCVPGTSVSSERVFSTAGDIVTAQRSCLTPQHVDQLLFLQKNLAVV 620          
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Match: A0A8B8G1X1_9HEMI (zinc finger BED domain-containing protein 1-like n=1 Tax=Sipha flava TaxID=143950 RepID=A0A8B8G1X1_9HEMI)

HSP 1 Score: 79.7 bits (195), Expect = 2.560e-16
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   34 QFEDIVRLELDAFKTTPGVDMSSYDKEGKVVLGDPLLWWRIKAREYPMLAALARRVLCIPPSQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLRS 324
            QF D    E   + + P ++ +           +P LWW+ +   YP ++ LA+ +LCIP S A SERVFS AG ++TP R+R+ P H+  +VFL++
Sbjct:   93 QFSDDDEDEFTRYLSEPQINHND----------NPCLWWKARENVYPKISVLAKNILCIPASSASSERVFSTAGNIITPKRNRMTPYHLSALVFLKN 179          
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Match: UPI00106D7A42 (zinc finger BED domain-containing protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D7A42)

HSP 1 Score: 82.8 bits (203), Expect = 2.660e-16
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   52 RLELDAFKTTPGVDMSSYDKEGKVVLGDPLLWWRIKAREYPMLAALARRVLCIPPSQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFL 318
            R E+D++ +T  +D+ S  + G  V  +PL WWR   R++P+LA  AR+ LCI  S + SER+FS AGQV+TP R++L+PE   ++VFL
Sbjct:  307 RKEIDSYLSTSSLDLIS--ESG--VETEPLAWWRDHCRDFPLLAKRARKYLCIQASSSPSERLFSKAGQVITPQRTQLNPEKANMLVFL 391          
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Match: UPI000DC134DE (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC134DE)

HSP 1 Score: 79.7 bits (195), Expect = 6.320e-16
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   28 TRQFEDIVRLELDAFKTTPGVDMSSYDKEGKVVLGDPLLWWRIKAREYPMLAALARRVLCIPPSQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFL 318
            T   +D+ ++ELD + + P V ++           +PL WW+I   E+P LA LA + LCI  +   SER+FS AG V+T  RS L PEH E ++FL
Sbjct:  133 TNSIQDLNQIELDKYLSLPSVGLNC----------NPLQWWKIFHSEFPTLAKLAMKYLCIQGTSVPSERIFSCAGNVITDHRSSLSPEHAEELIFL 219          
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Match: UPI000DC13F08 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC13F08)

HSP 1 Score: 79.7 bits (195), Expect = 7.960e-16
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  133 DPLLWWRIKAREYPMLAALARRVLCIPPSQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVL 330
            +P LWW+ +   YP ++ LA+++LCIP S A SERVFS AG ++TP R+++ P H+  +VFL++ L
Sbjct:  177 NPCLWWKARENVYPTISVLAKKILCIPASSASSERVFSRAGNIITPKRNKMTPHHLSALVFLKNNL 242          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59384.16487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE1.730e-3460.18Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI1.380e-2458.42Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
UPI00196252101.230e-1744.04E3 SUMO-protein ligase ZBED1-like n=1 Tax=Perca fl... [more]
UPI000CD5E11D1.660e-1744.55zinc finger BED domain-containing protein 1-like n... [more]
A0A6H5KUY5_9PHAE1.050e-1651.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001C04A0741.470e-1639.84E3 SUMO-protein ligase ZBED1-like n=3 Tax=Melanota... [more]
A0A8B8G1X1_9HEMI2.560e-1637.11zinc finger BED domain-containing protein 1-like n... [more]
UPI00106D7A422.660e-1646.07zinc finger BED domain-containing protein 1-like n... [more]
UPI000DC134DE6.320e-1640.21zinc finger BED domain-containing protein 1-like n... [more]
UPI000DC13F087.960e-1646.97zinc finger BED domain-containing protein 1-like n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59384contigEcto-sp13_S_contig59384:285..623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score111.7
Seed ortholog evalue2.3e-22
Seed eggNOG ortholog2880.D7G5Z0
Model size339
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
Cds size339
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.484178-CDS-Ecto-sp13_S_contig59384:284..6231681463825.484178-CDS-Ecto-sp13_S_contig59384:284..623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59384 285..623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59384.16487.1prot_Ecto-sp13_S_contig59384.16487.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59384 285..623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59384.16487.1

>prot_Ecto-sp13_S_contig59384.16487.1 ID=prot_Ecto-sp13_S_contig59384.16487.1|Name=mRNA_Ecto-sp13_S_contig59384.16487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
SGTATPSNSTRQFEDIVRLELDAFKTTPGVDMSSYDKEGKVVLGDPLLWW
RIKAREYPMLAALARRVLCIPPSQAHSERVFSAAGQVVTPTRSRLDPEHV
ELMVFLRSVLPKV
back to top

mRNA from alignment at Ecto-sp13_S_contig59384:285..623-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59384.16487.1 ID=mRNA_Ecto-sp13_S_contig59384.16487.1|Name=mRNA_Ecto-sp13_S_contig59384.16487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59384:285..623- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGTACCGCCACACCCTCGAATTCAACACGCCAGTTCGAGGACATCGT CCGCCTGGAGTTGGACGCTTTCAAGACAACACCTGGGGTAGACATGTCGA GCTATGACAAGGAGGGCAAGGTTGTTCTAGGGGACCCACTGCTGTGGTGG CGTATTAAGGCGCGGGAATACCCCATGCTGGCCGCACTGGCACGCCGGGT GTTGTGCATTCCCCCGTCCCAAGCGCACTCCGAACGTGTGTTTTCGGCGG CGGGACAAGTCGTAACCCCGACACGTTCTCGGCTCGACCCCGAACACGTA GAGCTCATGGTATTCCTTCGCTCTGTCCTGCCCAAGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59384:285..623-

>mRNA_Ecto-sp13_S_contig59384.16487.1 ID=mRNA_Ecto-sp13_S_contig59384.16487.1|Name=mRNA_Ecto-sp13_S_contig59384.16487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59384:285..623- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGTACCGCCACACCCTCGAATTCAACACGCCAGTTCGAGGACATCGT
CCGCCTGGAGTTGGACGCTTTCAAGACAACACCTGGGGTAGACATGTCGA
GCTATGACAAGGAGGGCAAGGTTGTTCTAGGGGACCCACTGCTGTGGTGG
CGTATTAAGGCGCGGGAATACCCCATGCTGGCCGCACTGGCACGCCGGGT
GTTGTGCATTCCCCCGTCCCAAGCGCACTCCGAACGTGTGTTTTCGGCGG
CGGGACAAGTCGTAACCCCGACACGTTCTCGGCTCGACCCCGAACACGTA
GAGCTCATGGTATTCCTTCGCTCTGTCCTGCCCAAGGTA
back to top