mRNA_Ecto-sp13_S_contig59370.16486.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59370.16486.1
Unique NamemRNA_Ecto-sp13_S_contig59370.16486.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59370.16486.1 vs. uniprot
Match: A0A6H5KZL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.940e-7
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = -2 
Query:    4 HVRCGMVFFPNHMSMFPSRPYRTGGANGGEASKGKGKNRTPQADPHTA 147
            H+ C  V    H +    RP + GGANGGEASKGKGKNRTPQADPHTA
Sbjct:  125 HLVCMQVVNEGH-ACTSCRPEQAGGANGGEASKGKGKNRTPQADPHTA 171
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BLAST of mRNA_Ecto-sp13_S_contig59370.16486.1 vs. uniprot
Match: D7G4Z3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z3_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.170e-6
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = -2 
Query:  394 AACHVVCMQVVNEGHACTSCRPEQAG 471
            AACH VCMQVVNEGHACT CRPEQAG
Sbjct:   95 AACHAVCMQVVNEGHACTFCRPEQAG 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59370.16486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZL3_9PHAE5.940e-764.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4Z3_ECTSI1.170e-692.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59370contigEcto-sp13_S_contig59370:198..669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size473
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.4341297-UTR-Ecto-sp13_S_contig59370:197..3061681463825.4341297-UTR-Ecto-sp13_S_contig59370:197..306Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig59370 198..306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.4535627-CDS-Ecto-sp13_S_contig59370:306..6691681463825.4535627-CDS-Ecto-sp13_S_contig59370:306..669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59370 307..669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59370.16486.1prot_Ecto-sp13_S_contig59370.16486.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59370 307..669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59370.16486.1

>prot_Ecto-sp13_S_contig59370.16486.1 ID=prot_Ecto-sp13_S_contig59370.16486.1|Name=mRNA_Ecto-sp13_S_contig59370.16486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MWFGKKTIPQRTCAHLHFMPCYLNELVPDSSTDRHSRRRSSSALLLCMCP
RTHMPREILKFLKMDLTAPLDTAPTHLHVHSPPSVDSKRTCSTHKPACSG
RQDVQAWPSLTTCMHTTWQAA
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mRNA from alignment at Ecto-sp13_S_contig59370:198..669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59370.16486.1 ID=mRNA_Ecto-sp13_S_contig59370.16486.1|Name=mRNA_Ecto-sp13_S_contig59370.16486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=472bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59370:198..669+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTTGCTGTGTGCGGATCCGCTTGTGGCGTGCGGTTCTTCCCCTTTCCTT
TGCTTGCTTCTCCGCCGTTGGCCCCACCTGTCCGATAGGGACGAGACGGA
AACATCGACATGTGGTTCGGAAAGAAGACCATACCACAACGAACATGTGC
GCATCTACATTTCATGCCTTGCTACCTGAACGAACTCGTTCCCGACAGCT
CTACCGATAGGCACAGCAGACGGCGGTCATCCTCCGCGCTGTTGCTTTGC
ATGTGCCCCCGCACCCACATGCCGCGTGAAATTTTAAAATTTTTGAAAAT
GGACCTAACGGCTCCACTCGACACAGCACCTACACACCTACATGTACACA
GCCCCCCCTCAGTAGATTCAAAGAGAACGTGCTCGACACACAAACCTGCT
TGCTCGGGACGGCAGGACGTGCAGGCGTGGCCCTCGTTGACCACTTGCAT
GCATACGACGTGGCAAGCAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59370:198..669+

>mRNA_Ecto-sp13_S_contig59370.16486.1 ID=mRNA_Ecto-sp13_S_contig59370.16486.1|Name=mRNA_Ecto-sp13_S_contig59370.16486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59370:198..669+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTCGGAAAGAAGACCATACCACAACGAACATGTGCGCATCTACA
TTTCATGCCTTGCTACCTGAACGAACTCGTTCCCGACAGCTCTACCGATA
GGCACAGCAGACGGCGGTCATCCTCCGCGCTGTTGCTTTGCATGTGCCCC
CGCACCCACATGCCGCGTGAAATTTTAAAATTTTTGAAAATGGACCTAAC
GGCTCCACTCGACACAGCACCTACACACCTACATGTACACAGCCCCCCCT
CAGTAGATTCAAAGAGAACGTGCTCGACACACAAACCTGCTTGCTCGGGA
CGGCAGGACGTGCAGGCGTGGCCCTCGTTGACCACTTGCATGCATACGAC
GTGGCAAGCAGCC
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