mRNA_Ecto-sp13_S_contig5936.16485.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5936.16485.1
Unique NamemRNA_Ecto-sp13_S_contig5936.16485.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5936.16485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5936contigEcto-sp13_S_contig5936:5152..5674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size525
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.3847063-CDS-Ecto-sp13_S_contig5936:5151..55171681463825.3847063-CDS-Ecto-sp13_S_contig5936:5151..5517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5936 5152..5517 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.3973505-UTR-Ecto-sp13_S_contig5936:5517..56741681463825.3973505-UTR-Ecto-sp13_S_contig5936:5517..5674Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5936 5518..5674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5936.16485.1prot_Ecto-sp13_S_contig5936.16485.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5936 5152..5517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5936.16485.1

>prot_Ecto-sp13_S_contig5936.16485.1 ID=prot_Ecto-sp13_S_contig5936.16485.1|Name=mRNA_Ecto-sp13_S_contig5936.16485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
LVESFPERQLSQRSCPPGSLDLLVELHSEGNLLKRRRPGDPPGRLVEGAP
EQELLQRLRKLDGFHRLIEIVPEGYLPERGRPRHTLERSVKASPKLERPK
RGGQRCTLHRLVKVVTKDELL*
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mRNA from alignment at Ecto-sp13_S_contig5936:5152..5674+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5936.16485.1 ID=mRNA_Ecto-sp13_S_contig5936.16485.1|Name=mRNA_Ecto-sp13_S_contig5936.16485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=523bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5936:5152..5674+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTCGAAAGCTTCCCCGAACGTCAGCTCTCGCAGCGAAGCTGCCCACC
TGGTTCCCTCGACCTCCTGGTTGAACTTCACTCCGAAGGTAACCTTCTGA
AGCGCCGCAGGCCAGGCGACCCCCCCGGTCGGCTGGTCGAAGGCGCGCCC
GAACAGGAGCTCCTGCAACGACTCAGGAAACTGGACGGCTTCCACCGGCT
GATCGAAATCGTCCCCGAAGGCTACCTCCCGGAGAGAGGCCGGCCACGCC
ACACCCTCGAGCGCTCGGTTAAAGCGTCGCCCAAACTTGAGCGACCGAAG
CGAGGAGGGCAGCGATGCACCCTGCATCGGCTGGTCAAAGTTGTCACCAA
AGACGAGCTGTTGTAAGGAGGGCGGCCATGCAACCCCCTGAAGGGGCTGG
TTAAACCTTCGCCCGAAATTCAGAGTTCGAAGAGACGTCGGCCATACGGT
TCCCGCTATCGACTGGTTGAAGTTGTGTCCGAAGACGATCTGCTCCAGTG
AGGCCGGGAACGATGCCCCCCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5936:5152..5674+

>mRNA_Ecto-sp13_S_contig5936.16485.1 ID=mRNA_Ecto-sp13_S_contig5936.16485.1|Name=mRNA_Ecto-sp13_S_contig5936.16485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5936:5152..5674+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTCGAAAGCTTCCCCGAACGTCAGCTCTCGCAGCGAAGCTGCCCACC
TGGTTCCCTCGACCTCCTGGTTGAACTTCACTCCGAAGGTAACCTTCTGA
AGCGCCGCAGGCCAGGCGACCCCCCCGGTCGGCTGGTCGAAGGCGCGCCC
GAACAGGAGCTCCTGCAACGACTCAGGAAACTGGACGGCTTCCACCGGCT
GATCGAAATCGTCCCCGAAGGCTACCTCCCGGAGAGAGGCCGGCCACGCC
ACACCCTCGAGCGCTCGGTTAAAGCGTCGCCCAAACTTGAGCGACCGAAG
CGAGGAGGGCAGCGATGCACCCTGCATCGGCTGGTCAAAGTTGTCACCAA
AGACGAGCTGTTGTAA
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