mRNA_Ecto-sp13_S_contig5935.16484.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5935.16484.1
Unique NamemRNA_Ecto-sp13_S_contig5935.16484.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5935.16484.1 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 5.780e-97
Identity = 151/169 (89.35%), Postives = 153/169 (90.53%), Query Frame = 1 
Query:    1 MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLGSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKTFRGMIEKFAKRQGRIRGSGGGGGGLEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVEDFWLT 507
            MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKML SMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVK FRGMIEKFAK +             EQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLV+DFWLT
Sbjct:    1 MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSE-------------EQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLT 156
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BLAST of mRNA_Ecto-sp13_S_contig5935.16484.1 vs. uniprot
Match: A0A7S2VZL5_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2VZL5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.670e-9
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:   25 QAFAQILMARKVMSQDEAQKALDVSYQRF--GELAFTLDEAISKVDKMLGSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKTFRGMIEKFAKRQG 342
            QAF Q+L+A +V+S+++AQ  L+    R   G L   L+  + +V++ L  MD+ VR+M    P     H  +N  AD+IA+ HGSK++  +++ FR  I    +  G
Sbjct:   24 QAFLQMLLAARVVSENKAQSMLEAVRDRMEAGSLPGDLETTLKRVNRALKLMDLEVRTMAL--PQQERVHAVVNLAADDIAEKHGSKMQHNEIRAFRNAISIIGECDG 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5935.16484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSK7_ECTSI5.780e-9789.35Non-structural maintenance of chromosomes element ... [more]
A0A7S2VZL5_9STRA4.670e-934.26Non-structural maintenance of chromosomes element ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5935contigEcto-sp13_S_contig5935:2139..7685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score286.6
Seed ortholog evalue7.7e-75
Seed eggNOG ortholog2880.D8LSK7
Model size507
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Nse1 non-SMC component of SMC5-6 complex
EggNOG OGs2EYQU@1,2T06J@2759
Ec32 ortholog descriptionNon-structural maintenance of chromosomes element 1
Ec32 orthologEc-09_001990.1
Cds size507
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5935.16484.1prot_Ecto-sp13_S_contig5935.16484.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5935 2139..7685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.2926803-CDS-Ecto-sp13_S_contig5935:2138..21861681463825.2926803-CDS-Ecto-sp13_S_contig5935:2138..2186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5935 2139..2186 +
1681463825.3048398-CDS-Ecto-sp13_S_contig5935:3291..34201681463825.3048398-CDS-Ecto-sp13_S_contig5935:3291..3420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5935 3292..3420 +
1681463825.3152857-CDS-Ecto-sp13_S_contig5935:4808..48741681463825.3152857-CDS-Ecto-sp13_S_contig5935:4808..4874Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5935 4809..4874 +
1681463825.3251736-CDS-Ecto-sp13_S_contig5935:5140..52751681463825.3251736-CDS-Ecto-sp13_S_contig5935:5140..5275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5935 5141..5275 +
1681463825.3368914-CDS-Ecto-sp13_S_contig5935:6263..63441681463825.3368914-CDS-Ecto-sp13_S_contig5935:6263..6344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5935 6264..6344 +
1681463825.3545697-CDS-Ecto-sp13_S_contig5935:7637..76851681463825.3545697-CDS-Ecto-sp13_S_contig5935:7637..7685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5935 7638..7685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5935.16484.1

>prot_Ecto-sp13_S_contig5935.16484.1 ID=prot_Ecto-sp13_S_contig5935.16484.1|Name=mRNA_Ecto-sp13_S_contig5935.16484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISK
VDKMLGSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVK
TFRGMIEKFAKRQGRIRGSGGGGGGLEQQLELLDLQGLTEHIKTKEAEST
KREMIKSFADQLVEDFWLT
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mRNA from alignment at Ecto-sp13_S_contig5935:2139..7685+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5935.16484.1 ID=mRNA_Ecto-sp13_S_contig5935.16484.1|Name=mRNA_Ecto-sp13_S_contig5935.16484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5547bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5935:2139..7685+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCTCTGAGGGAGCCGCTTCAAGCCTTCGCCCAGATCCTCATGGT
GAGTTCCGATCAAGCGTATGGCGGCTGATAAACATACAACACGGGTGAAA
CAGCAGTGGATGTGATGCTCCGTTGGAGAGCTAACTGGTACCAGGAGCAG
CAGAGGGAACTCCCAGAGAGCGTACCACAACTTCCAAATGGGCGTCACGA
GGCTCTTGTACTGCGGCTTCCCAGGACAACATGAACACATTACGGCAAGG
CTGCTGAAGGTAGTATCTCCTCGGAAGGCGCCCCGAGCTCGCGTCACGCA
TCTCGCAAGGCAGCATCTATTCAATGGGAGTGTATGTGTGCATAGCCATC
TTGTAAACACACTTGTTTAGCAACACACCTCTGACTGCTGCAAACTTGAC
GGGCTGGACGGACTAATTAGCCACTACAGCAGTATCGTTTCTTGTCCTGG
GGGCATCGGCGCCTGGACCAGTGTCTGCGGTCGTATAAGAGGAGGCATTT
GGGCGACAACCGAGTCGAAGATGGAGTTGTATGCAAGTACAAGGCCGAGC
GTGCTTTCTGTGTGTCATGATGGATGGCTTTGTCGTTACCCTCATGATCT
CGCTGTCTTCTTTGGCGAAGATTGGTCGTGCAACAGCGAGGGGAACGGGC
ACAAGCGGTGGCGACATGAAGAGAACTGCGCCCCCACGTCGCAATGCTTG
CCGAAAGCAATTTTCGGGAAATCGAATGCGTCTTCTTCTGCCGCATGGAT
ATCTCGCAAAAAAACTGTCTCGTTTAACGTAGAAAACGGTTTCCTTTTTT
CGGCATTCGGCAGGTACTCTGGACCACCGACGCATTGCTGTTCGAACAGC
TTCATACGTGCCGATCAACGAAAGAGTGCACCTGTTCTTACAACCCCCCC
TCGCGCCTCCATTCGTAAACGGTGCACCAGACTACCAGAAATCGAAACAG
TCTTCGACTTTCATCAAGGACCCGTCTGTCGGGAACTCAGTTCGAAAAGT
CGCCTCACGGCTGTTTCATTCATGCTGATCAAACACTAGCGTCCAGCGCC
CCCCATACCCTGTGCACATCACTGCCATGCCGTGCCATATCGCGCCCATT
CTACCGCGTACCACCTACAATTACTCTCCGTTGTATGTTTGTGAGGATCA
TAGGCGAGGAAAGTGATGTCTCAAGACGAGGCCCAGAAGGCGCTGGACGT
CTCCTACCAGAGATTCGGAGAGCTCGCGTTCACCCTCGACGAGGCGATTT
CGAAGGTGGACAAGATGCTGGGCAGCATGGACGTGAGTGCGCGGCTGTGG
AGTCTGATTCCAGACTTAAGCAACGGTGTCGCAGAAGTGCAGAACCTATT
TATATCCGCAACAATTGGTGATGTGGTTTTTTGCTTTGTGGTTGGGCATG
TGGCAATGTTGGAAACCCCTCTGAGCGAAAGTTTTGCACTGACTCATCCC
AAAGACAGTAAAACGTCCAGTGTACTTTGAAGGAGATATTGGTCGATCGT
TGAGTTGCAGTGCTACCCATGAGAGCAGCCGCTAGCGTGCCAGGCACAGT
TTCTTTCAAGGGAACGTCTGCATGGGTGTTATGGGATCGAGCAGCGGGCG
GGGGACTTGCTCTGTGGGGTGTGAGGCTGGTGTGCGTTTTGCCCCCGCAG
TCTTGTTTCCGTCGGTCTTTGTTCCCCTAATTTAGGGGCCGCTCTCGACT
TCCGTTTCCGGGAAACCTTGTCTGGATGCCACGCTTCGTCCACCCTTTTC
TCTTGGGAGGTCCAATCTCCTCCACCAAGCATGCGGGGAGTGGCGTCAGC
GTTTTTTTCGGGCAGGTTGACAGTGATTTCCCATCATTGGGCTCCGCGAT
TTTGACGAGAACCGAGAAAGGGGCCGCTGAGTTTACCGAGCGAAGACACC
TTGGACCGGTGAAAAATTGTCTATTACAGCAGTACGTAGCTGTTTTTGAA
ATCTGCGGCGTTCTGGCCGTGCTTGGTTTTTCGGCGAAGAGGATCACTGT
CTCCCTTTGTCACGTCCACCATTTTCAACATTTCTACATTTTTCCCCACA
TGCCTCCGTGCCATTTGAGGATGTCGTCCAAACAACAGCAACCTTGAAAT
TCTAAAACAGGAAGGGATACAGGCTCCGAGATCGTACGAATGGAGACTCG
CTATGAGTAATGAATCAAACCCTTTCTTCTCAGTCCGCCGGAAATAAATA
AGTAAGAATAGGTTGGCTGATCGTGCCGCGGTTCCGCCGTGTGCAGTGTA
CACGGAACTAACATCGAAAGACGAGAGAGTGGCAGAGAGCTTAAATCGCA
TCGTTAACCATCACCCCAAAGGCTACCTTTGGTCCGCAACTACACGAAAA
CAGACACCGCAATCTACCGCATTGTATCATAACCTTCGCAGGTTGGGCCG
TTGAATGCGGCTCACCCCTTTCATGAAATTCCCCGCCATTCGTCATGCGC
TCCTTCTTTTTGGCGAAATGCCAACTGGCCTCCCGTGAAAACCTTGGCTG
ACATCAATTCTTGCCGTACTAGATTCGTCTATTCGTGGTAACAGTCGAGG
AACAGACGATCCGGGGGTGCGAGAATTGTCTTTTTCGCAACTCTCTAGTG
AAGAAGAGCAGAACACACAAACAACGGAGCGCGCATGCACGTTGCCCGTC
GCCGCTTCCTTGTTCTGCAGATGGGAGTGAGAAGTATGAAGGCAAGCGGG
CCGAACGGGTTAATCTACCACTGTTTCATTAACAAGGTATGTACGAGACG
GGGAGTTGGCGAGATGCGCGAGAGAGAGAGAGAAAGGGAGAGAGAGAGAG
AGAGAGAGAAAGCACTCGAAGCGCTCGATGAACGACCCATCGTTTCAACG
GTCGCGATCCCGGGAGTGGTGGTAGACCTCGGCCGCTTCTAGAGATTTTG
AAGTGTTTCGGATGTTAGAGGTTTTGGTTGGAAAGTCTTGCTTCTGCGTT
GATCGATGAGACTGATATTTTTTTTCGTGTTTCTTCTTGGCCTCCGTTGC
AGACCGCGGACGAGATCGCGAAGCTGCACGGATCCAAGCTGGAAGACTGG
CAGGTCAAGACCTTCCGGGGCATGATCGAAAAATTCGCGAAGAGGCAAGG
AAGGATACGCGGGAGTGGGGGGGGGGGGGGGGGACTCGTAGCCGGGGGTG
ACGTAGGGGGAAGACCGTTGACCGGGGGGGGGGGAAAAGCAGGCGGGAGG
GAAAAANNNNNNNNNNGAAGAGGAGGGGGGGGGGGGGGGTGGTGAGTGAG
GGTGGTGGTGGAGAAAAAGAAAAAAGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGTACTCGTAGCCGTGCGTGACGTAG
GCGGAAGACCGTTGACCTGGAGGGTGCGAAAAGCAGGCGAGAGTGACAAA
AAGGGGGAGATTAAGTGGAAACGTGCCGCCCATCACGTCTGTCACAGAGT
AGAAGTTGCGTGCTTCCGTGAGGCATGTTTGTAGGCATCCATGATCAGCG
TGCCAGCGCCGACGGTCCACGGCTACGCGCGATGAGAGTGAGGGTACTCG
GTGGGTTGTCCGTTGAGTCGGAGGATGTCACCCGCGCGGTCCTATGGATA
ACAGCCGCCGCAGCTGGCGCGACTACCCCTGCTGTAGCCCCCCTCTCTTC
AACATGTGTCTCTGTCGAATGTGTCTTCTCGTGACCTCCTCACTCGTCGC
CCCCATCACCCCCCTCTCTTCCCGCAAACGACACAGTTTTTTTGGCAAGT
GGAGAGTACCCCTTCCCTGCGACGCTCGCTTGCTGGAGTGATACTCTGCT
CGCTTGTTCAACAGCGATAAAGATACAACATTGTTTTTTTGCCCAAGACC
TTTCCGGCCGCCTACTATTCGTGTACGAAACAGAAGTATCTCTGCCCGCT
TTGTCTTGTGCCTTTATTTCTGTAGTTCAAACTGCGTTTTCGGTCGACAC
TCATGCGACGGTTGTGTGTGACGTGTGTGTGTCTGCGTCACCTTTTTGTG
CGACGGTCTAGGACTCGTCGCTCGTGGCTGTTTTAGATCGGACACGCTGA
TTATCTTCCGCAACTCAGGCCGTATTTATGTTGTGTGGGACATTTCTGTT
CGTTCATCATCTGGGGCGCAGTGAGGAGCAGCAGCTCGAGCTGCTGGACT
TGCAAGGCCTCACGGAGCACATTAAAACGAAGGAGGCTGAAAGCACCAAG
AGGGAGGTGAACGAAAGTGTCTACGATTCGAGTATATCCGATCCCCGTTT
TTTTTTTTTCCGCGGGGGTGTCGTCAGCAAAACGAACAAATCTATTGCTA
CGTACTGTTGATAGCTGCCCCTCGAAAAAACCTTTCGTCTCCAAGATGTG
CCTCTCTTCTCTCGCTCTCTCGCTTTCTCTTCATCTACCTCTCTCTCTCT
CTGTATCTATCCCTACCTTTCTCTGTCGCCGTGCGTTGCCGGCAGTACCT
CTACAAGGAGACGTCAAACCTTTGAATAGTCCATTTCCTTCGCCAGCATT
CGCGGGGAAACCGTTCTCCTCCCGCACCAATCCCCCCGTCAGGACCAGCC
CCAACCCGTAACCTCCATGGAGATGGATTGCACGGCCAATTTTCCAACGA
CCGCGTGGGTTCACGTCAAAACCAAACGCGATGACCTTCTAAATAGTTTT
TTGTGTAAGAGGAGCTGGTGGAAAAGCCGGAACCTCACAGTTTCACCGCT
TGTGCCATTTTCGCCGCATTGTGGACAATTTCGCGATAGAAATCCACAGC
ATGAGCGGCTGCAAATGCAGTGCCAGCCAAACTAGACCCGTTCAGCTTCT
ACTGGCACCCCGGTGCTCAGTGAACCGAATTTTGTTGGGGCCTTTTTGCA
TGCGCACGTGTTGGTCTTCATCGTGACGTGGACTGGATAATCTGTCGGTC
GCCACCCCCCGTTCATCCATCGATTGACATCATGTTTCATGCACGCGTGA
CTCTTTCTTGCGGCGTTTTTTTTTCTCCGTCTGTATCCCGTGACTTGATA
GCAACAGTCCCCGACAAAGTTTCGGGTCAGTCTGCGACGAAGTAGTAGTA
AACCGAAAACACATGAAGACGAACCCGTGGGGCGGCCAGTCAACCGTGAG
GCACTACACACACCAAGGAGTCTGACTAGCGTTTTTTTGAAGTTTCTTTC
CTCTGAGCATCTCAAACTCTCAGCTCATTCATATTTCGCGTGAACTGTGG
GAGGCCCTCATCTACGGCCATTTTGTTTCGGAAACAGCGAGGGCGGAAGC
ACGCCACCAGAGGGACTGCAGGCGAAAGGGTCTTCGGCACCAGACCCGAC
TAAAAGCCGCCGCCTAAGAGTCATAGCCTGCCCGCTTCTTTTTTGCTGTG
CTCCTGCTCGTTGAATCTCCGCTTGCCTCGCTGCGGCTGCTGATGCTACC
GAGGGGTTGTGCTGCTGATGTTTTCGATGCGCCCCCCGCCCCCGCCCCCC
CCCCCCTTCGCACGGCCGTCCTTCCGCATCCGCCGGCTCGACCTCATAGA
TGATCAAGTCTTTCGCAGACCAGCTGGTGGAAGACTTCTGGCTTACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5935:2139..7685+

>mRNA_Ecto-sp13_S_contig5935.16484.1 ID=mRNA_Ecto-sp13_S_contig5935.16484.1|Name=mRNA_Ecto-sp13_S_contig5935.16484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5935:2139..7685+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCTCTGAGGGAGCCGCTTCAAGCCTTCGCCCAGATCCTCATGGC
GAGGAAAGTGATGTCTCAAGACGAGGCCCAGAAGGCGCTGGACGTCTCCT
ACCAGAGATTCGGAGAGCTCGCGTTCACCCTCGACGAGGCGATTTCGAAG
GTGGACAAGATGCTGGGCAGCATGGACATGGGAGTGAGAAGTATGAAGGC
AAGCGGGCCGAACGGGTTAATCTACCACTGTTTCATTAACAAGACCGCGG
ACGAGATCGCGAAGCTGCACGGATCCAAGCTGGAAGACTGGCAGGTCAAG
ACCTTCCGGGGCATGATCGAAAAATTCGCGAAGAGGCAAGGAAGGATACG
CGGGAGTGGGGGGGGGGGGGGGGGACTCGAGCAGCAGCTCGAGCTGCTGG
ACTTGCAAGGCCTCACGGAGCACATTAAAACGAAGGAGGCTGAAAGCACC
AAGAGGGAGATGATCAAGTCTTTCGCAGACCAGCTGGTGGAAGACTTCTG
GCTTACG
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