mRNA_Ecto-sp13_S_contig5934.16483.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5934.16483.1
Unique NamemRNA_Ecto-sp13_S_contig5934.16483.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5934.16483.1 vs. uniprot
Match: D7G554_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G554_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.440e-26
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 3 
Query:    3 AGSTTDELHPLLAPYWPGLCSWDGQGSARAVRSLRLAIEEQGGERPGSAFTTLL 164
            A STT E+HPLLAPYWPGLCSWDGQGSARAVRSLRLAIEEQGGERPGSAFT LL
Sbjct:    2 AASTTGEVHPLLAPYWPGLCSWDGQGSARAVRSLRLAIEEQGGERPGSAFTMLL 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5934.16483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G554_ECTSI1.440e-2692.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5934contigEcto-sp13_S_contig5934:6697..7995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.1569502-UTR-Ecto-sp13_S_contig5934:6696..66981681463825.1569502-UTR-Ecto-sp13_S_contig5934:6696..6698Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5934 6697..6698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.171445-CDS-Ecto-sp13_S_contig5934:6698..68081681463825.171445-CDS-Ecto-sp13_S_contig5934:6698..6808Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5934 6699..6808 -
1681463825.184437-CDS-Ecto-sp13_S_contig5934:7940..79951681463825.184437-CDS-Ecto-sp13_S_contig5934:7940..7995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5934 7941..7995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5934.16483.1prot_Ecto-sp13_S_contig5934.16483.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5934 6699..7995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5934.16483.1

>prot_Ecto-sp13_S_contig5934.16483.1 ID=prot_Ecto-sp13_S_contig5934.16483.1|Name=mRNA_Ecto-sp13_S_contig5934.16483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
WLGRPPTNFILCWLRIGPGCAAGTDRGQHGRYGPSGWRSRSKGARGRALL
SRRC*
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mRNA from alignment at Ecto-sp13_S_contig5934:6697..7995-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5934.16483.1 ID=mRNA_Ecto-sp13_S_contig5934.16483.1|Name=mRNA_Ecto-sp13_S_contig5934.16483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1299bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5934:6697..7995- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCTGGGTCGACCACCGACGAACTTCATCCTCTGCTGGCTCCGTATTGG
CCCGGGTAAGGAGCGTGCGGAGTTGTGTTGAATGTTTTTTTTTGGAGGGG
GAGGAGGGGACGAATTATCCGAAGCACTCGTCAACATCAGACTGTTGCGG
ACAATAAATGGGCTCCCGACACAGCAGCAGCACGTTTGTTTGTTCGAGGT
TTAGGTCCAAGGTAGACGTTGTGCAGTGGGAGGTACTGCGGTTGTGGTAA
GACACTTGCGAACCGCGCCAGAGACACTGATTGATTTTGCGAAACACGAT
ACATGGCGCGCCGCGCACAGCTCCGTGTCCCCGGTATCCTTCTGACGCGC
TGCGTTGACAACTCTCTTCAACAGCTGCTCGTGTTTTTTGCGTGAGTGCC
CAGCCCACACATGCCTCTGGATCAGTCGGCAAATGGTACAGTTTGTGCGG
TTGTCCCGTCCTTTCGTGCATCCGTGCGCTGCTGCTTCGTGTGCTACACG
CACGTTCCGTTCCGTTGGACTGAGCGGTGGCCCCGACGGTCTTTTCGCCT
TCAAACTTCATGTTGTACATGGAATTCCACCTGTTTCAATTCGTGCTCAT
GGAGGTGGTCTGCTGGTGGATGTGGATGGATTTACTTGGTGGCAGTCTGT
TGTCGGCGTTGTTCTTATCTTTTAACACTCGAGAACGGTACGCTCGCCGC
TCAGTACGTTCCAACAGCGGTACCTGTCCAGTTGACTCGGACGCCTCAGG
TGGTGACAGACCAACTACCCAACGATGGGTGCACATTACTAAACAGTCTG
ACGTACAGAGCGACTATTGTACGACCAGGCTCGTGTCACAGAGGACGAAC
AAGACGAAGAGAATCTTACTACAAGTCATGGCTCCGATATAAGAGGGTCG
AAATCGGCTGTAACGGATTCGACCTTCTATAGTATAGTTGAGTACTCTCT
CATTCTCGTATATGAGGGGGCTCCGATGTACGAGGATCGAGGGCCTTTGT
CACACAAACCTGTTATGAAGAAGCCACGACCGTAGAGATAAAACAGGTTG
CATTTGAAGAATTTGAAGACAAACGTTGTTTGCTTGTGTGCATCTCGCCG
CATTGTGTAAATGTTGTGTGCCTTGTGTGCTTCTTGCCGCATTTTTTGTG
TGTGCAACGCCGCCGCTATATGCGCTGCGCGCCGCAGGCTGTGCAGCTGG
GACGGACAGGGGTCAGCACGGGCGGTACGGTCCCTCCGGCTGGCGATCGA
GGAGCAAGGGGGCGAGAGGCCGGGCTCTGCTTTCACGACGCTGCTAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5934:6697..7995-

>mRNA_Ecto-sp13_S_contig5934.16483.1 ID=mRNA_Ecto-sp13_S_contig5934.16483.1|Name=mRNA_Ecto-sp13_S_contig5934.16483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5934:6697..7995- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCTGGGTCGACCACCGACGAACTTCATCCTCTGCTGGCTCCGTATTGG
CCCGGGCTGTGCAGCTGGGACGGACAGGGGTCAGCACGGGCGGTACGGTC
CCTCCGGCTGGCGATCGAGGAGCAAGGGGGCGAGAGGCCGGGCTCTGCTT
TCACGACGCTGCTAA
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