mRNA_Ecto-sp13_S_contig59338.16481.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59338.16481.1
Unique NamemRNA_Ecto-sp13_S_contig59338.16481.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A6H5JQ37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ37_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.330e-38
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1
Query:   34 QTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLR 252
            Q INMMQIVCNGILKGMG+QRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLC LR
Sbjct:  395 QMINMMQIVCNGILKGMGYQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCLLR 467          
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A7J7IGT0_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGT0_9RHOD)

HSP 1 Score: 72.8 bits (177), Expect = 6.190e-13
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 AAIAASRILMLQTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFL 249
            AA AA  + + +  + +Q    GILK +G QR+ A+A+  GFW   +PL+A     LG GV G W+G A+GE  L LFY+C++
Sbjct:  449 AASAALFVALFEIQDCLQYTSVGILKAIGKQRVGAMASFAGFWAACIPLAALFAFVLGLGVMGFWLGFALGELFLALFYICYI 531          
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: M1VH38_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1VH38_CYAM1)

HSP 1 Score: 66.2 bits (160), Expect = 1.240e-10
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 AAIAASRILMLQTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLRYL 258
            AA AA  + + +  + +Q    GILK +G QR  A+A+ +GFW   VPL+A        GV G W+G A+GE  L LFY+C++ ++
Sbjct:  454 AAQAALFVSLFEIQDCLQYTSVGILKSIGKQRTGALASFLGFWTGCVPLAALFAFVFRQGVNGFWLGFAMGELCLALFYICYIVFV 539          
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A318UPC4_9SPHI (MATE family multidrug resistance protein n=1 Tax=Pedobacter nutrimenti TaxID=1241337 RepID=A0A318UPC4_9SPHI)

HSP 1 Score: 65.5 bits (158), Expect = 2.260e-10
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   52 QIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLRYLEPQTEV 276
            Q+V  G+L+G+G   I  +   + +W++G+PL  FLG++LGFGV G+W GL  G     L  L FLR+ +    +
Sbjct:  377 QVVGLGVLRGLGDVNIPTLITFIAYWIIGIPLGYFLGIELGFGVNGIWYGLTFGLLTASL--LLFLRFQKKTKNL 449          
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A3B9YKD8_9BACT (MATE family efflux transporter n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A3B9YKD8_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.070e-9
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   34 QTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVG 213
            Q  + +Q+V  G L+G+G  RI  +A  VG+W++G+P+ A+L  + G+GV GLWIGL +G
Sbjct:  358 QVFDGVQVVMTGALRGLGETRIPMLANAVGYWLIGLPVGAWLAFRRGWGVLGLWIGLCLG 417          
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A0N7JF14_9SPHI (MATE family efflux transporter n=12 Tax=Pedobacter TaxID=84567 RepID=A0A0N7JF14_9SPHI)

HSP 1 Score: 63.5 bits (153), Expect = 1.070e-9
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   52 QIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLRY 255
            Q+V  G+L+G+G   I      V +WV+G+PL  FLG+QLG GV G+W GL  G   L    L FLR+
Sbjct:  377 QVVGLGVLRGIGDVNIPTFITFVAYWVIGIPLGYFLGIQLGLGVNGIWYGLTFGL--LTASVLLFLRF 442          
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: UPI001FB0BDE7 (MATE family efflux transporter n=1 Tax=Clostridium perfringens TaxID=1502 RepID=UPI001FB0BDE7)

HSP 1 Score: 59.7 bits (143), Expect = 1.200e-9
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   52 QIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYL 240
            Q+V  GIL+G G  R   +   +GFW++GVP+S +LG++ G+G  GLW G  VG   + +F L
Sbjct:   31 QVVAVGILRGTGDTRTPMVINVLGFWLLGVPVSYYLGVRAGYGPVGLWTGFVVGLAAVAVFLL 93          
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A7Y9L7J0_9SPHI (MATE family multidrug resistance protein n=2 Tax=unclassified Mucilaginibacter TaxID=2617802 RepID=A0A7Y9L7J0_9SPHI)

HSP 1 Score: 63.2 bits (152), Expect = 1.470e-9
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   52 QIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLR--YLEPQTEV 276
            Q+V  GIL+GMG   I  I+  + +WVVG+P+  +LG++L +GVKG+W GL +G   +V   L F R  Y+  + EV
Sbjct:  376 QVVGLGILRGMGDVNIPTISTFLAYWVVGLPVGYYLGIELNWGVKGIWYGLVLGL--MVSSALMFFRFQYISRRHEV 450          
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A524HPW6_9BACT (MATE family efflux transporter n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A524HPW6_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.470e-9
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1
Query:   34 QTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLRYLEPQTEVGR 282
            Q  + +Q+VC GIL+G+G  R   + A VGFW +G P+S  LG     G +GLW G+  G   +  F L  +R L+ +  + R
Sbjct:  376 QVFDGLQVVCVGILRGLGDTRAPMVVALVGFWFIGTPVSVLLGFATPLGAQGLWWGILAGLGAVAAFLLVRVR-LQMRRNLSR 457          
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: W4GET2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GET2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.490e-9
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   10 AASRILMLQTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFL 249
            A +  ++ + I+ M      +LKGMG Q I A      +++ G+P+ A L  Q GFGV+GLW+GLA+G F     YL F+
Sbjct:  404 ALAMFVVFELIDCMSCAAQSLLKGMGKQAIGAWVNAAAYYLFGIPIGALLAFQYGFGVEGLWVGLALGLFGGFCVYLWFI 483          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQ37_9PHAE2.330e-3895.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7J7IGT0_9RHOD6.190e-1342.17Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M1VH38_CYAM11.240e-1039.53Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A318UPC4_9SPHI2.260e-1038.67MATE family multidrug resistance protein n=1 Tax=P... [more]
A0A3B9YKD8_9BACT1.070e-945.00MATE family efflux transporter n=1 Tax=Elusimicrob... [more]
A0A0N7JF14_9SPHI1.070e-945.59MATE family efflux transporter n=12 Tax=Pedobacter... [more]
UPI001FB0BDE71.200e-942.86MATE family efflux transporter n=1 Tax=Clostridium... [more]
A0A7Y9L7J0_9SPHI1.470e-942.86MATE family multidrug resistance protein n=2 Tax=u... [more]
A0A524HPW6_9BACT1.470e-937.35MATE family efflux transporter n=1 Tax=Gemmatimona... [more]
W4GET2_9STRA1.490e-938.75Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59338contigEcto-sp13_S_contig59338:53..576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score144.1
Seed ortholog evalue3.1e-32
Seed eggNOG ortholog2880.D7FMM8
Model size285
KEGG koko:K03327
KEGG TC2.A.66.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005618,GO:0005623,GO:0005911,GO:0008150,GO:0008152,GO:0009505,GO:0009506,GO:0009636,GO:0009664,GO:0009987,GO:0016043,GO:0016209,GO:0016491,GO:0016684,GO:0030054,GO:0030312,GO:0042221,GO:0044464,GO:0045229,GO:0050896,GO:0051716,GO:0055044,GO:0055114,GO:0070887,GO:0071554,GO:0071555,GO:0071669,GO:0071840,GO:0071944,GO:0097237,GO:0098754,GO:0098869,GO:1990748
Exons2
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
Cds size258
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.1023219-CDS-Ecto-sp13_S_contig59338:52..2351681463825.1023219-CDS-Ecto-sp13_S_contig59338:52..235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59338 53..235 -
1681463825.1154811-CDS-Ecto-sp13_S_contig59338:474..5491681463825.1154811-CDS-Ecto-sp13_S_contig59338:474..549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59338 475..549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.1260905-UTR-Ecto-sp13_S_contig59338:549..5761681463825.1260905-UTR-Ecto-sp13_S_contig59338:549..576Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig59338 550..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59338.16481.1prot_Ecto-sp13_S_contig59338.16481.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59338 53..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59338.16481.1

>prot_Ecto-sp13_S_contig59338.16481.1 ID=prot_Ecto-sp13_S_contig59338.16481.1|Name=mRNA_Ecto-sp13_S_contig59338.16481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MLQTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGF
GVKGLWIGLAVGEFPLVLFYLCFLRYLEPQTEVGR*
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mRNA from alignment at Ecto-sp13_S_contig59338:53..576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59338.16481.1 ID=mRNA_Ecto-sp13_S_contig59338.16481.1|Name=mRNA_Ecto-sp13_S_contig59338.16481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=524bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59338:53..576- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCTATCGCTGCTTCTCGAATCTTGATGCTGCAGACGATTAACATGAT GCAGATTGTGTGCAACGGCATCTTGAAGGGCATGGGCCACCAGCGCATCC AGGTGAGAAAAGAGACAACATAAAGAGAAAGACATCGCGGTCGAGAAGCA GGGGGTGGGGGGGCGAAACACATTTGAGGAAAACTGCAGAACGTTCACCC GTAAGAGAACGAGTTCCAGCCACACCATACTACATTGCTGCCTGAAACAT ATTCGGCCGTCTCCTCTTGCTTCACGAAGCCCTACCCAAAAGACACAGCA AGCACGTGCTTACCCCCAAAAAATCAATTTTCCCTGCACAGGCCATTGCG GCGGGCGTCGGGTTTTGGGTGGTTGGCGTTCCCCTGTCGGCCTTTCTTGG GCTTCAGCTCGGCTTCGGGGTGAAGGGCCTCTGGATAGGGCTAGCCGTAG GGGAATTCCCCCTCGTCCTCTTCTACCTTTGCTTTCTCAGGTACCTTGAG CCCCAAACTGAAGTAGGACGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59338:53..576-

>mRNA_Ecto-sp13_S_contig59338.16481.1 ID=mRNA_Ecto-sp13_S_contig59338.16481.1|Name=mRNA_Ecto-sp13_S_contig59338.16481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59338:53..576- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCAGACGATTAACATGATGCAGATTGTGTGCAACGGCATCTTGAA
GGGCATGGGCCACCAGCGCATCCAGGCCATTGCGGCGGGCGTCGGGTTTT
GGGTGGTTGGCGTTCCCCTGTCGGCCTTTCTTGGGCTTCAGCTCGGCTTC
GGGGTGAAGGGCCTCTGGATAGGGCTAGCCGTAGGGGAATTCCCCCTCGT
CCTCTTCTACCTTTGCTTTCTCAGGTACCTTGAGCCCCAAACTGAAGTAG
GACGATAG
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