mRNA_Ecto-sp13_S_contig59338.16481.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A6H5JQ37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ37_9PHAE) HSP 1 Score: 144 bits (362), Expect = 2.330e-38 Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1
Query: 34 QTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLR 252
Q INMMQIVCNGILKGMG+QRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLC LR
Sbjct: 395 QMINMMQIVCNGILKGMGYQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCLLR 467
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A7J7IGT0_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGT0_9RHOD) HSP 1 Score: 72.8 bits (177), Expect = 6.190e-13 Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 1 AAIAASRILMLQTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFL 249
AA AA + + + + +Q GILK +G QR+ A+A+ GFW +PL+A LG GV G W+G A+GE L LFY+C++
Sbjct: 449 AASAALFVALFEIQDCLQYTSVGILKAIGKQRVGAMASFAGFWAACIPLAALFAFVLGLGVMGFWLGFALGELFLALFYICYI 531
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: M1VH38_CYAM1 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1VH38_CYAM1) HSP 1 Score: 66.2 bits (160), Expect = 1.240e-10 Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 1 AAIAASRILMLQTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLRYL 258
AA AA + + + + +Q GILK +G QR A+A+ +GFW VPL+A GV G W+G A+GE L LFY+C++ ++
Sbjct: 454 AAQAALFVSLFEIQDCLQYTSVGILKSIGKQRTGALASFLGFWTGCVPLAALFAFVFRQGVNGFWLGFAMGELCLALFYICYIVFV 539
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A318UPC4_9SPHI (MATE family multidrug resistance protein n=1 Tax=Pedobacter nutrimenti TaxID=1241337 RepID=A0A318UPC4_9SPHI) HSP 1 Score: 65.5 bits (158), Expect = 2.260e-10 Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 52 QIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLRYLEPQTEV 276
Q+V G+L+G+G I + + +W++G+PL FLG++LGFGV G+W GL G L L FLR+ + +
Sbjct: 377 QVVGLGVLRGLGDVNIPTLITFIAYWIIGIPLGYFLGIELGFGVNGIWYGLTFGLLTASL--LLFLRFQKKTKNL 449
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A3B9YKD8_9BACT (MATE family efflux transporter n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A3B9YKD8_9BACT) HSP 1 Score: 63.5 bits (153), Expect = 1.070e-9 Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 34 QTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVG 213
Q + +Q+V G L+G+G RI +A VG+W++G+P+ A+L + G+GV GLWIGL +G
Sbjct: 358 QVFDGVQVVMTGALRGLGETRIPMLANAVGYWLIGLPVGAWLAFRRGWGVLGLWIGLCLG 417
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A0N7JF14_9SPHI (MATE family efflux transporter n=12 Tax=Pedobacter TaxID=84567 RepID=A0A0N7JF14_9SPHI) HSP 1 Score: 63.5 bits (153), Expect = 1.070e-9 Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 52 QIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLRY 255
Q+V G+L+G+G I V +WV+G+PL FLG+QLG GV G+W GL G L L FLR+
Sbjct: 377 QVVGLGVLRGIGDVNIPTFITFVAYWVIGIPLGYFLGIQLGLGVNGIWYGLTFGL--LTASVLLFLRF 442
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: UPI001FB0BDE7 (MATE family efflux transporter n=1 Tax=Clostridium perfringens TaxID=1502 RepID=UPI001FB0BDE7) HSP 1 Score: 59.7 bits (143), Expect = 1.200e-9 Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 52 QIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYL 240
Q+V GIL+G G R + +GFW++GVP+S +LG++ G+G GLW G VG + +F L
Sbjct: 31 QVVAVGILRGTGDTRTPMVINVLGFWLLGVPVSYYLGVRAGYGPVGLWTGFVVGLAAVAVFLL 93
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A7Y9L7J0_9SPHI (MATE family multidrug resistance protein n=2 Tax=unclassified Mucilaginibacter TaxID=2617802 RepID=A0A7Y9L7J0_9SPHI) HSP 1 Score: 63.2 bits (152), Expect = 1.470e-9 Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 52 QIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLR--YLEPQTEV 276
Q+V GIL+GMG I I+ + +WVVG+P+ +LG++L +GVKG+W GL +G +V L F R Y+ + EV
Sbjct: 376 QVVGLGILRGMGDVNIPTISTFLAYWVVGLPVGYYLGIELNWGVKGIWYGLVLGL--MVSSALMFFRFQYISRRHEV 450
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: A0A524HPW6_9BACT (MATE family efflux transporter n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A524HPW6_9BACT) HSP 1 Score: 63.2 bits (152), Expect = 1.470e-9 Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 34 QTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFLRYLEPQTEVGR 282
Q + +Q+VC GIL+G+G R + A VGFW +G P+S LG G +GLW G+ G + F L +R L+ + + R
Sbjct: 376 QVFDGLQVVCVGILRGLGDTRAPMVVALVGFWFIGTPVSVLLGFATPLGAQGLWWGILAGLGAVAAFLLVRVR-LQMRRNLSR 457
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Match: W4GET2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GET2_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.490e-9 Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 10 AASRILMLQTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFGVKGLWIGLAVGEFPLVLFYLCFL 249
A + ++ + I+ M +LKGMG Q I A +++ G+P+ A L Q GFGV+GLW+GLA+G F YL F+
Sbjct: 404 ALAMFVVFELIDCMSCAAQSLLKGMGKQAIGAWVNAAAYYLFGIPIGALLAFQYGFGVEGLWVGLALGLFGGFCVYLWFI 483 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59338.16481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig59338.16481.1 >prot_Ecto-sp13_S_contig59338.16481.1 ID=prot_Ecto-sp13_S_contig59338.16481.1|Name=mRNA_Ecto-sp13_S_contig59338.16481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp MLQTINMMQIVCNGILKGMGHQRIQAIAAGVGFWVVGVPLSAFLGLQLGFback to top mRNA from alignment at Ecto-sp13_S_contig59338:53..576- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig59338.16481.1 ID=mRNA_Ecto-sp13_S_contig59338.16481.1|Name=mRNA_Ecto-sp13_S_contig59338.16481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=524bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59338:53..576- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59338:53..576- >mRNA_Ecto-sp13_S_contig59338.16481.1 ID=mRNA_Ecto-sp13_S_contig59338.16481.1|Name=mRNA_Ecto-sp13_S_contig59338.16481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59338:53..576- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |