mRNA_Ecto-sp13_S_contig5933.16477.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5933.16477.1
Unique NamemRNA_Ecto-sp13_S_contig5933.16477.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5933.16477.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 1.260e-93
Identity = 141/145 (97.24%), Postives = 142/145 (97.93%), Query Frame = 1 
Query:    1 MSSTFSDETWRYFREKCVSLLGDGSVVSAGIDNKSKSYRIHLVADLPEGVRKEWRRTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAAEHARPEKRGGKREGAGRPRGS 435
            MSSTFSDETWRYFREKCVSLLGDGSVVSAG+DNKSKSYRIHLVADL EGVRKEWR TPIKRPKGRKTGRDRGAEHKFFEDW PSEGGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAAEHARPEKRGGKREGAGRPRGS
Sbjct:    1 MSSTFSDETWRYFREKCVSLLGDGSVVSAGLDNKSKSYRIHLVADLREGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWRPSEGGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAAEHARPEKRGGKREGAGRPRGS 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5933.16477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5I2_ECTSI1.260e-9397.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5933contigEcto-sp13_S_contig5933:2011..2445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size435
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.0356529-CDS-Ecto-sp13_S_contig5933:2010..24451681463825.0356529-CDS-Ecto-sp13_S_contig5933:2010..2445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5933 2011..2445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5933.16477.1prot_Ecto-sp13_S_contig5933.16477.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5933 2011..2445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5933.16477.1

>prot_Ecto-sp13_S_contig5933.16477.1 ID=prot_Ecto-sp13_S_contig5933.16477.1|Name=mRNA_Ecto-sp13_S_contig5933.16477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MSSTFSDETWRYFREKCVSLLGDGSVVSAGIDNKSKSYRIHLVADLPEGV
RKEWRRTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVERLRDSRHRI
EAEAEAEVAAARTKRPRDCHASAAEHARPEKRGGKREGAGRPRGS
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mRNA from alignment at Ecto-sp13_S_contig5933:2011..2445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5933.16477.1 ID=mRNA_Ecto-sp13_S_contig5933.16477.1|Name=mRNA_Ecto-sp13_S_contig5933.16477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5933:2011..2445+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCCACGTTCAGCGATGAGACATGGCGTTACTTCAGGGAGAAGTG
TGTATCGCTTCTGGGAGACGGGAGTGTTGTCAGCGCGGGCATAGACAATA
AGAGCAAGTCGTATCGCATACATCTTGTCGCGGACCTCCCTGAGGGCGTT
AGGAAGGAGTGGAGGAGAACCCCGATCAAACGCCCAAAGGGCCGCAAGAC
GGGTCGCGACCGGGGTGCCGAGCACAAGTTCTTCGAGGACTGGTGGCCAT
CTGAGGGCGGCAACGTCGTCGAGCGCCTGCGAGACTCCAGGCACCGCATT
GAGGCGGAGGCAGAAGCGGAGGTGGCGGCAGCTCGAACCAAGAGACCGCG
GGACTGTCATGCCAGCGCCGCCGAACATGCACGCCCCGAGAAGCGCGGCG
GCAAGCGCGAAGGCGCAGGCAGGCCACGCGGTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5933:2011..2445+

>mRNA_Ecto-sp13_S_contig5933.16477.1 ID=mRNA_Ecto-sp13_S_contig5933.16477.1|Name=mRNA_Ecto-sp13_S_contig5933.16477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5933:2011..2445+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCCACGTTCAGCGATGAGACATGGCGTTACTTCAGGGAGAAGTG
TGTATCGCTTCTGGGAGACGGGAGTGTTGTCAGCGCGGGCATAGACAATA
AGAGCAAGTCGTATCGCATACATCTTGTCGCGGACCTCCCTGAGGGCGTT
AGGAAGGAGTGGAGGAGAACCCCGATCAAACGCCCAAAGGGCCGCAAGAC
GGGTCGCGACCGGGGTGCCGAGCACAAGTTCTTCGAGGACTGGTGGCCAT
CTGAGGGCGGCAACGTCGTCGAGCGCCTGCGAGACTCCAGGCACCGCATT
GAGGCGGAGGCAGAAGCGGAGGTGGCGGCAGCTCGAACCAAGAGACCGCG
GGACTGTCATGCCAGCGCCGCCGAACATGCACGCCCCGAGAAGCGCGGCG
GCAAGCGCGAAGGCGCAGGCAGGCCACGCGGTAGC
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