mRNA_Ecto-sp13_S_contig59315.16472.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59315.16472.1
Unique NamemRNA_Ecto-sp13_S_contig59315.16472.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Match: A0A7S1WEE3_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WEE3_ALECA)

HSP 1 Score: 75.5 bits (184), Expect = 5.780e-16
Identity = 33/73 (45.21%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 MSKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEEQVRSNFDTLLDFSQNNCVCPAPQ 219
            +S+ R+R++ +C+++C+DLL + PRDQA+W+LKCRALT +Q++DD E++E+  +  D L+D    N V  AP+
Sbjct:   17 VSRFRQRRWDECIDVCTDLLERNPRDQAVWFLKCRALTCKQWIDDVEIDEEGVA--DLLMD---ENAVAQAPR 84          
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Match: A0A7S0S2B1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S2B1_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 9.320e-15
Identity = 32/63 (50.79%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    4 SKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEEQVRSNFDTLLDFSQ 192
            S+ RRRK+ +C+ +C+ +L + P DQA+WYLKCRALT++ ++DDTE+EE+  +  D LLD +Q
Sbjct:   24 SRFRRRKFDECIELCTSILDRNPYDQAVWYLKCRALTMKNWIDDTEIEEEGIA--DALLDENQ 84          
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Match: A0A7S0WUT4_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WUT4_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 9.920e-15
Identity = 35/72 (48.61%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    4 SKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEEQVRSNFDTLLDFSQNNCVCPAPQ 219
            SK+RRRK+ +C+ +C+ +L K P DQ++WYLKCRALTL+ ++DDTE+EE+  +    LLD   +N +  AP+
Sbjct:   29 SKLRRRKFDECIEVCTGMLEKNPYDQSVWYLKCRALTLKNWIDDTEIEEEGVAEM--LLD---DNAIAQAPR 95          
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Match: A0A7S2J5I5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J5I5_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 1.080e-14
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 MSKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEEQVRSNFDTLLD 183
            M K+++ KY DC+ +C++LLA  P DQA+WYLKCRALTL  ++DDT+ EE+  +  D LLD
Sbjct:   24 MHKLKQHKYDDCIALCTELLAANPYDQAVWYLKCRALTLLAWVDDTDFEEEGVA--DVLLD 82          
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Match: A0A2P6MUB7_9EUKA (TRP protein for ciliary function n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MUB7_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 3.460e-14
Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    4 SKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEEQVRSNFDTLLDFSQNNCVCPAPQQDSAPQLLISSA 255
            S+++RR++ +C+  C++LL K P DQA+WY+KCRALT   + DDTEMEE+  +    LLD   +N +  AP+  ++ Q  +SSA
Sbjct:    9 SRLKRRRFDECIQTCTELLQKNPLDQAVWYIKCRALTDVAFTDDTEMEEEGIAEI--LLD---DNAIATAPRPGTSMQRPLSSA 87          
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Match: A0A836CMW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.670e-14
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 MSKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEEQ 153
            MSKMRR+K SD   IC  LLA   RD+A+WYLKCRALT EQY+D++EMEE+
Sbjct:    1 MSKMRRQKLSDAAAICGGLLASNSRDEAVWYLKCRALTAEQYVDESEMEEE 51          
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Match: A0A7S4DZ46_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DZ46_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 7.890e-14
Identity = 27/50 (54.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    4 SKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEEQ 153
            SK  RRKY +C+++C+ +L + PRD A+W+LKCRA+T+  Y+DDT+MEE+
Sbjct:   16 SKFNRRKYQECIDLCTAVLEQNPRDMAVWFLKCRAITMLDYVDDTDMEEE 65          
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Match: A0A250X1L7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X1L7_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 8.790e-14
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    4 SKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEEQVRSNFDTLLD 183
            S++RRRK+ +C+ IC+ LL K P DQA WYLKCRALTL+ ++DDTE+EE+  +  D LLD
Sbjct:    9 SRLRRRKFDECLEICNPLLDKNPYDQAAWYLKCRALTLKNWIDDTEIEEEGIA--DILLD 66          
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Match: A0A8J1ZKC9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZKC9_9DINO)

HSP 1 Score: 74.3 bits (181), Expect = 9.810e-14
Identity = 28/51 (54.90%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 MSKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEEQ 153
            +SK R RK+ +C+ +CSD+L + PRD+A+W+LKCRA+T ++YLDD EM+E+
Sbjct:   13 LSKFRFRKWEECIELCSDMLTQNPRDEAVWFLKCRAMTKKEYLDDLEMDEE 63          
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Match: A0A6U6Q178_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U6Q178_9DINO)

HSP 1 Score: 70.5 bits (171), Expect = 2.410e-13
Identity = 34/73 (46.58%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 MSKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEEQVRSNFDTLLDFSQNNCVCPAPQ 219
            +S+ R+R++ D ++IC+ LL K PRDQA W+LKCRALT +Q++DD E++E+  +  D L+D    N V  AP+
Sbjct:   14 LSRFRQRRWDDAIDICTVLLEKNPRDQAAWFLKCRALTCKQWMDDVEIDEEGVA--DLLMD---ENAVAQAPR 81          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59315.16472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1WEE3_ALECA5.780e-1645.21Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S0S2B1_9CHLO9.320e-1550.79Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S0WUT4_9CHLO9.920e-1548.61Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S2J5I5_9EUKA1.080e-1454.10Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A2P6MUB7_9EUKA3.460e-1444.05TRP protein for ciliary function n=1 Tax=Planoprot... [more]
A0A836CMW3_9STRA4.670e-1466.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DZ46_9EUKA7.890e-1454.00Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A250X1L7_9CHLO8.790e-1458.33Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A8J1ZKC9_9DINO9.810e-1454.90Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A6U6Q178_9DINO2.410e-1346.58Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59315contigEcto-sp13_S_contig59315:1..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start1
Seed ortholog score71.6
Seed ortholog evalue2e-10
Seed eggNOG ortholog3055.EDO97459
Model size255
KEGG koko:K16781
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs34J0N@3041,37YGK@33090,COG0457@1,KOG1129@2759
Cds size255
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463824.581464-CDS-Ecto-sp13_S_contig59315:0..811681463824.581464-CDS-Ecto-sp13_S_contig59315:0..81Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59315 1..81 +
1681463824.5945368-CDS-Ecto-sp13_S_contig59315:368..5421681463824.5945368-CDS-Ecto-sp13_S_contig59315:368..542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59315 369..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59315.16472.1prot_Ecto-sp13_S_contig59315.16472.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59315 1..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59315.16472.1

>prot_Ecto-sp13_S_contig59315.16472.1 ID=prot_Ecto-sp13_S_contig59315.16472.1|Name=mRNA_Ecto-sp13_S_contig59315.16472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MSKMRRRKYSDCVNICSDLLAKTPRDQAIWYLKCRALTLEQYLDDTEMEE
QVRSNFDTLLDFSQNNCVCPAPQQDSAPQLLISSA
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mRNA from alignment at Ecto-sp13_S_contig59315:1..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59315.16472.1 ID=mRNA_Ecto-sp13_S_contig59315.16472.1|Name=mRNA_Ecto-sp13_S_contig59315.16472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=542bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59315:1..542+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAAGATGCGTCGACGAAAGTATAGCGATTGCGTCAACATTTGCTC CGACCTCTTGGCCAAGACTCCGCGAGATCAGGTACCCTGGCCGTGTGAAG TACTGGATTGACCGTACCGGACCTAATTACCAACGTTATCAAGAAGTGCA TCCTTGGCTTGTGTCGTATCCACGACGTTGCGGTAGTTGTCCACGCAGAA TACGAACTTCCACACGTATTCTATGGATAAACGAAGGTCTGAGTCCACGT ACAGCTTGTTGTAGGACTTCAACAGCGGGCAGTAGCCAGTACTCGAAGCT TACATACAATACGTAGTTGCTCGTGCGCAGCTGGGTCTAATGTATCGCGT GGGCGGTTGCTCTCTCAGGCCATCTGGTACCTCAAGTGCCGTGCTCTGAC GCTGGAACAGTACCTGGACGACACCGAAATGGAAGAGCAGGTGCGAAGTA ATTTCGATACTTTACTTGATTTCTCCCAAAACAATTGTGTGTGTCCAGCA CCGCAGCAAGACTCTGCGCCACAACTACTTATCTCCTCTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59315:1..542+

>mRNA_Ecto-sp13_S_contig59315.16472.1 ID=mRNA_Ecto-sp13_S_contig59315.16472.1|Name=mRNA_Ecto-sp13_S_contig59315.16472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59315:1..542+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAAGATGCGTCGACGAAAGTATAGCGATTGCGTCAACATTTGCTC
CGACCTCTTGGCCAAGACTCCGCGAGATCAGGCCATCTGGTACCTCAAGT
GCCGTGCTCTGACGCTGGAACAGTACCTGGACGACACCGAAATGGAAGAG
CAGGTGCGAAGTAATTTCGATACTTTACTTGATTTCTCCCAAAACAATTG
TGTGTGTCCAGCACCGCAGCAAGACTCTGCGCCACAACTACTTATCTCCT
CTGCC
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