prot_Ecto-sp13_S_contig593.16470.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig593.16470.1
Unique Nameprot_Ecto-sp13_S_contig593.16470.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length541
Homology
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BLAST of mRNA_Ecto-sp13_S_contig593.16470.1 vs. uniprot
Match: A0A6H5KF56_9PHAE (TRAF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF56_9PHAE)

HSP 1 Score: 913 bits (2359), Expect = 0.000e+0
Identity = 474/525 (90.29%), Postives = 480/525 (91.43%), Query Frame = 0 
Query:    1 MTTSGPDWVGQEWLHGEITPWLGAEETLRRTCSVCRAWRHWCNNYLTALHIGNDHQRLHGSSCSARTAGLSIPLFLPLVPFALRELRMSGGWTSLGGVELGTIRKGCRLKKLVVTGMRLCSFSYRELLLFEHLEELDISDSQMDIPLPRLRFSEPASGKPGLDGIPQAEPAALSHPRRPSIISARARSGRVVEQASDVSAPFAPSTAARIGRDRRRSRVSSLGEGGGPAFDSPRFAATLKRLVAVKTRLWNRWDLSTFAALTSLEVSFAGRAMLKQLHRKAEMGSRLTELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSARLPPAAVEGAAAAARAEPYNTFFPSANAVAASQQDGGEGDVAVASLRTLVLGRCGGISEPAFEAFLDLVVGGGVIRAGLVGKRGSGSEERGXXXXXXXXXXXXXXXXXXXVGAAYAGGGLALSRVRLEGCRALGNRGLALLCDGAMERLSDIQV 525
            MTTSGP WVGQEWLHGEI PWLGAEETLRRTCSVCRAWRHWCNNYLT LHIGNDHQ LHGSSCS RTAGLSIPLFLPLVPFALREL MSGGWTSLGGVELGTIR+GCRLKKLVVTGMRLCSFSYRELLLFEHLEELDISDSQMDIPLPRLRFSEPASGKP LDGIPQAEP ALS PRRPSII  RARSGRVVEQAS +S PFAPSTA+R+G DRRRSRVSS GE G  AFDSPRFAATLKRLVAVKTRLWNRWDLSTFAALTSLE SFAGRAMLKQLHRKAEMGSRL ELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSARLPPAAVEGAAAAARA+PYNTFFPSANAVAASQQDGGEG VAVASLRTLVLGRCGGISE AFE FLDL  GGGVI+AGLVGKRGSGSEERG                   VGAAYAGGGLALSRVRLEGCRALGNRGLALLCDGA ERLSDIQV
Sbjct:    1 MTTSGPGWVGQEWLHGEIAPWLGAEETLRRTCSVCRAWRHWCNNYLTVLHIGNDHQHLHGSSCSVRTAGLSIPLFLPLVPFALRELSMSGGWTSLGGVELGTIRRGCRLKKLVVTGMRLCSFSYRELLLFEHLEELDISDSQMDIPLPRLRFSEPASGKPDLDGIPQAEPVALSPPRRPSIIFPRARSGRVVEQASGISTPFAPSTASRVGGDRRRSRVSSGGEFGDRAFDSPRFAATLKRLVAVKTRLWNRWDLSTFAALTSLEASFAGRAMLKQLHRKAEMGSRLAELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSARLPPAAVEGAAAAARAQPYNTFFPSANAVAASQQDGGEGGVAVASLRTLVLGRCGGISESAFETFLDLAAGGGVIQAGLVGKRGSGSEERGGSIRNRKNSGGSDGGDAAAVGAAYAGGGLALSRVRLEGCRALGNRGLALLCDGARERLSDIQV 525
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BLAST of mRNA_Ecto-sp13_S_contig593.16470.1 vs. uniprot
Match: D8LM48_ECTSI (TRAF-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM48_ECTSI)

HSP 1 Score: 670 bits (1729), Expect = 1.560e-235
Identity = 391/540 (72.41%), Postives = 396/540 (73.33%), Query Frame = 0 
Query:    1 MTTSGPDWVGQEWLHGEITPWLGAEETLRRTCSVCRAWRHWCNNYLTALHIGNDHQRLHGSSCSARTAGLSIPLFLPLVPFALRELRMSGGWTSLGGVELGTIRKGCRLKKLVVTGMRLCSFSYRELLLFEHLEELDISDSQMDIPLPRLRFSEPASGKPGLDGIPQAEPAALSHPRRPSIISARARSGRVVEQASDVSAPFAPSTAARIGRDRRRSRVSSLGEGGGPAFDSPRFAATLKRLVAVKTRLWNRWDLSTFAALTSLEVSFAGRAMLKQLHRKAEMGSRLTELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSARLPPAAVEGAAAAARAEPYNTFFPSANAVAASQQDGGEGDVAVASLRTLVLGRCGGISEPAFEAFLDLVVGGGVIRAGLVGKRGSGSEERGXXXXXXXXXXXXXXXXXXXVGAAYAGGGLALSRVRLEGCRALGNRGLALLCDGAMERLSDIQVGWVPAPLAWSVRCLG 540
            MTTSGPDWVGQEWLHGEI PWLGAEETLRRTCSVCRAWRHWCNNYLT LHIGNDHQRLHGSSCSARTAGLSIPLFLPLVPFALREL MSGGWTSLGGVELGTIR+GCRLKKLVVTGMR                                                                                                                    FAATLKRLVAVKTRLWNRWDLSTFAALTSLEVSFAGRAMLKQL RKAEMGSRL ELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSARLPPAAV+GAAAAARAEPYNTFFPSANAVAASQQDGGEGDVAVASLRTLVLGRCGG+SEPAFEAFLDLV G GVIRAGLVGKRGSGSEERGXXXXXXXXXXXXXXXXXXX        GLALS VRLEGCRALGNRGLALLC GA ERLSDIQ   +    AW +R  G
Sbjct:    1 MTTSGPDWVGQEWLHGEIAPWLGAEETLRRTCSVCRAWRHWCNNYLTVLHIGNDHQRLHGSSCSARTAGLSIPLFLPLVPFALRELSMSGGWTSLGGVELGTIRRGCRLKKLVVTGMR--------------------------------------------------------------------------------------------------------------------FAATLKRLVAVKTRLWNRWDLSTFAALTSLEVSFAGRAMLKQLPRKAEMGSRLAELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSARLPPAAVKGAAAAARAEPYNTFFPSANAVAASQQDGGEGDVAVASLRTLVLGRCGGVSEPAFEAFLDLVAGCGVIRAGLVGKRGSGSEERGXXXXXXXXXXXXXXXXXXXXXXXXXXXGLALSSVRLEGCRALGNRGLALLCGGARERLSDIQCPTLRMVKAWGIRLAG 424
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig593.16470.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF56_9PHAE0.000e+090.29TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LM48_ECTSI1.560e-23572.41TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 14..155
e-value: 8.7E-7
score: 30.1
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 73..438

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig593contigEcto-sp13_S_contig593:18631..23357 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig593.16470.1mRNA_Ecto-sp13_S_contig593.16470.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig593 18451..23357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig593.16470.1 ID=prot_Ecto-sp13_S_contig593.16470.1|Name=mRNA_Ecto-sp13_S_contig593.16470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=541bp
MTTSGPDWVGQEWLHGEITPWLGAEETLRRTCSVCRAWRHWCNNYLTALH
IGNDHQRLHGSSCSARTAGLSIPLFLPLVPFALRELRMSGGWTSLGGVEL
GTIRKGCRLKKLVVTGMRLCSFSYRELLLFEHLEELDISDSQMDIPLPRL
RFSEPASGKPGLDGIPQAEPAALSHPRRPSIISARARSGRVVEQASDVSA
PFAPSTAARIGRDRRRSRVSSLGEGGGPAFDSPRFAATLKRLVAVKTRLW
NRWDLSTFAALTSLEVSFAGRAMLKQLHRKAEMGSRLTELCVCDLALRNL
VRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLE
LTDVALDDSMLAVLGEAFSSARLPPAAVEGAAAAARAEPYNTFFPSANAV
AASQQDGGEGDVAVASLRTLVLGRCGGISEPAFEAFLDLVVGGGVIRAGL
VGKRGSGSEERGGSIRRRRSSGGGDGEDAAAVGAAYAGGGLALSRVRLEG
CRALGNRGLALLCDGAMERLSDIQVGWVPAPLAWSVRCLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf