mRNA_Ecto-sp13_S_contig5928.16465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5928.16465.1 vs. uniprot
Match: D7FQ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ57_ECTSI) HSP 1 Score: 1670 bits (4325), Expect = 0.000e+0 Identity = 908/991 (91.62%), Postives = 935/991 (94.35%), Query Frame = 2
Query: 98 MERELEAQMKDSLAESRALREKFQDDLECMQQDAQRRLVEEKAKWKEYILCAEREKTDAIQQAEFLQEQLIASAHEIWIARDRIFQLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTVAGSRRLADAVERQDSALAEVRRDSAQLRDQRDRLAQDSAMLGIKLHQLRKKQAAGRLLHALDLARYRSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCRDARRRLDALRDSRETVSRLTVKACWRRHQGMVIAGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTVVAKKVRRVQAEEELAGARELLLAADENARRAEAEHNQHLATVEALAEQIKQRTAELEVERTALGAAKSTASSARGRCVRLGAARVLKVLERYRRDRLAQTFSCWVDAGRVFPVVPSTEEDIASLGPQEGRRVVSETCAGHRQGLAQQQGDAPTRSRDGFGPPTADSTIDLCALSATTSDGRGAQGGAHTADIDEDRGFVVAPIEDEGGGACLDALPSVAANNDRSRDNRRDAHTDGINGTMASNGNTPAPLDISSIPSTPVTASHKRPSNQHQGTPRCSYLFVGGYPSPGRRSTTSLSTASSKPAAAKSNISGASNPVPVPSGSSWSENPDLPRLVLSLRAAVGEELYAVGERLLRCVEADHREIHGRSYHPVPITPAEREQFNVCLEDAARGRLRRVVLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRMNGWTCGGXXXXXDGGGCLRDTRPRSARNVKEGQDEISSLTTGPLSTPSEKARAARFLRDRLVPLLENAADAWGGHRQPWQNTPCTVGRRAATESDTSRFQRRTTVLTRQKNNPHRLRRGNGDETGLSSPRRGRLCCLDSGAGPRKFWETVAGPRLAEASWNVDIKALEQQLWDLAMLVRGPDLR 3070
MERELEAQMKDSLAES+ALREKFQDDLECMQQDAQRRLVEEKAKWKE+IL AE EK DAIQQAEFLQEQLI SA+E+WIAR+RIFQLESEAQS+RSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELE+ERIKTVAGSRRLADAV+RQD+ALAEVRRDSAQLR+QRDRLAQDSA+LGIKLHQLRKKQAA RLLHAL LAR+RSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCR+ARR LDALRDSRETVSRLTVKACWRRHQGMVIAGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCT VAKK RRV+AE+ELAGARELLLAADENAR AEAEHNQHLAT EALAEQIKQRTAELEV RTALGAAKSTASSARGRC+RLGAARVLKVLER RRDRLAQTFSCWVDAGRVFPVVPSTEEDIASLGPQEGRRVVSETCAGHRQGLAQQQGDA RSRDGFGPPTADST DLCALS TTS GRGAQGG HTA IDED+GFVVA EDEGGGA LDALPSVAA+NDRSRDNRRDAHTDG+N TMASNGNTPAPLD+SSIPSTPVTASHKRPSNQ Q TPRCS LFV GYPSPGRRSTTSLSTASSKPAA+KS+ISGASNPV P GS W NPDLPRLVLSLRAAVGEELYAVGERLLRCVEAD+RE HGRSYHPVPITPAEREQF VCLEDAARGRLRR VLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVR+NGWTCGGXXXXX CLR R +SARN +EGQD ISSLTTGPLST +EKARAAR LRDRLVPLLENAADAWG HRQPWQNTP VGRRAATESD SRFQRRTTV TRQKNNPHRLRRGNGDETGLSSP RGRLCCLDSGAGPRKFWE VAGPRL EASWNVDIKALEQQLWDLAMLVRGPDLR
Sbjct: 1 MERELEAQMKDSLAESQALREKFQDDLECMQQDAQRRLVEEKAKWKEHILRAEGEKADAIQQAEFLQEQLITSANEVWIARERIFQLESEAQSIRSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELENERIKTVAGSRRLADAVDRQDNALAEVRRDSAQLREQRDRLAQDSAILGIKLHQLRKKQAARRLLHALYLARHRSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCRNARRGLDALRDSRETVSRLTVKACWRRHQGMVIAGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTAVAKKARRVEAEKELAGARELLLAADENARCAEAEHNQHLATAEALAEQIKQRTAELEVARTALGAAKSTASSARGRCIRLGAARVLKVLERNRRDRLAQTFSCWVDAGRVFPVVPSTEEDIASLGPQEGRRVVSETCAGHRQGLAQQQGDALARSRDGFGPPTADSTTDLCALSTTTSGGRGAQGGMHTAGIDEDKGFVVASTEDEGGGAHLDALPSVAASNDRSRDNRRDAHTDGVNDTMASNGNTPAPLDVSSIPSTPVTASHKRPSNQDQRTPRCSSLFVDGYPSPGRRSTTSLSTASSKPAASKSSISGASNPVSGPGGSGWPANPDLPRLVLSLRAAVGEELYAVGERLLRCVEADYRETHGRSYHPVPITPAEREQFRVCLEDAARGRLRRAVLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRVNGWTCGGXXXXXXXXXCLRGARRKSARNAEEGQDGISSLTTGPLSTTAEKARAARVLRDRLVPLLENAADAWGRHRQPWQNTPRAVGRRAATESDKSRFQRRTTVSTRQKNNPHRLRRGNGDETGLSSPGRGRLCCLDSGAGPRKFWEAVAGPRLVEASWNVDIKALEQQLWDLAMLVRGPDLR 991
BLAST of mRNA_Ecto-sp13_S_contig5928.16465.1 vs. uniprot
Match: A0A6H5L397_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L397_9PHAE) HSP 1 Score: 1622 bits (4201), Expect = 0.000e+0 Identity = 889/983 (90.44%), Postives = 912/983 (92.78%), Query Frame = 2
Query: 347 IFQLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTVAGSRRLADAVERQDSALAEVRRDSAQLRDQRDRLAQDSAMLGIKLHQLRKKQAAGRLLHALDLARYRSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCRDARRRLDALRDSRETVSRLTVKACWRRHQGMVIAGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTVVAKKVRRVQAEEELAGARELLLAADENARRAEAEHNQHLATVEALAEQIKQRTAELEVERTALGAAKSTASSARGRCVRLGAARVLKVLERYRRDRLAQTFSCWVDAGRVFPVVPSTEEDIASLGPQEGRRVVSETCAGHRQGLAQQQGDAPTRSRDGFGPPTADSTIDLCALSATTSDGRGAQGGAHTADIDEDRGFVVAPIEDEGGGACLDALPSVAANNDRSRDNRRDAHTDGINGTMASNGNTPAPLDISSIPSTPVTASHKRPSNQHQGTPRCSYLFVGGYPSPGRRSTTSLSTASSKPAAAKSNISGASNPVPVPSGSSWSENPDLPRLVLSLRAAVGEELYAVGERLLRCVEADHREIHGRSYHPVPITPAEREQFNVCLEDAARGRLRRVVLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRMNGWTCGGXXXXXDGGGCLRDTRPRSARNVKEGQDEISSLTTGPLSTPSEKARAARFLRDRLVPLLENAADAWGGHRQPWQNTPCTVGRRAATESDTSRFQRRTTVLTRQKNNPHRLRRGNGDETGLSSPRRGRLCCLDSGAGPRKFWETVAGPRLAEASWNVDIKALEQQLWDLAMLVRGPDLRGHRERHQGLALNRCELLRRTLDVRVFEVLLLYTRTRLIWDGIENDDXXXXXXXXXXXXHFYNNNS-RLDVDAGLK 3292
+FQLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTV+GSRRLADAVERQD+ALAEVRRDSAQLR+QRDR +DSAMLGIKLHQLRKKQAAGRLLHALDLAR+RSLATALRALVVRVTNDIHLKK GAETRCRDARRRLDALRD+RETVSRLTVKACWRRHQGMVIAGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTVVAKK RRV+AE+EL GARELLLAADENARRAEAEHNQHLATV ALAEQIKQRTAELEV RTAL AAKSTASSARGRC+RLGAARVLKVL R RRDRLAQTFSCWVDAGRVFPVVPS EE IASLGPQ+GRR VSETCAGHRQGLAQQQGDAP SRDGFGPP ADST LCALS TTS GRGAQGGAHTAD+ ED+GFVVA EDEGGGA LDALPSVAA+ND SRDN RDAHT+G+NGTMASNGNTPAPLDISSIPSTPV ASHKRPSNQHQGTPRCS LFVGGYPSPGRRSTTSLSTASSKPAAAKSNISGASNPVPVP GS WS NPDLPRLVLSLRAAVGEELYAVGERLLRCVEADHREIHG+ YHPVPITPAEREQF+VCLEDAARGRLRR VLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRMNGWTCGG XXX GGCLR RP+SARN +EGQDEISSLTTGPLSTPSEKARAAR LRDRLVPLLENAADAWG HRQPWQN P VGRRAATESDTSRFQRRTTV TRQ+NNPHRLRRGNGDETGLSSPRRGRLCCLDSGAGPRKFWETVAGPRL EASWNVDIKALEQQLWDLAMLVRGPDLRGH ERHQGLALNRCELLRRTLDVRVFEVLLLY RTRLIWDGI+ND XXXXXXXXXXXX FYNN+S RLDVDAGLK
Sbjct: 1 MFQLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTVSGSRRLADAVERQDNALAEVRRDSAQLREQRDR--RDSAMLGIKLHQLRKKQAAGRLLHALDLARHRSLATALRALVVRVTNDIHLKK--------------------GAETRCRDARRRLDALRDTRETVSRLTVKACWRRHQGMVIAGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTVVAKKARRVEAEKELTGARELLLAADENARRAEAEHNQHLATVGALAEQIKQRTAELEVARTALDAAKSTASSARGRCIRLGAARVLKVLARNRRDRLAQTFSCWVDAGRVFPVVPSNEEVIASLGPQQGRRAVSETCAGHRQGLAQQQGDAPAESRDGFGPPKADSTTHLCALSTTTSGGRGAQGGAHTADMGEDKGFVVASTEDEGGGAYLDALPSVAASNDPSRDNSRDAHTNGVNGTMASNGNTPAPLDISSIPSTPVAASHKRPSNQHQGTPRCSSLFVGGYPSPGRRSTTSLSTASSKPAAAKSNISGASNPVPVPGGSGWSANPDLPRLVLSLRAAVGEELYAVGERLLRCVEADHREIHGKLYHPVPITPAEREQFHVCLEDAARGRLRRAVLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRMNGWTCGGGGXXXXXGGCLRGARPKSARNAEEGQDEISSLTTGPLSTPSEKARAARVLRDRLVPLLENAADAWGRHRQPWQNMPRAVGRRAATESDTSRFQRRTTVSTRQQNNPHRLRRGNGDETGLSSPRRGRLCCLDSGAGPRKFWETVAGPRLVEASWNVDIKALEQQLWDLAMLVRGPDLRGHCERHQGLALNRCELLRRTLDVRVFEVLLLYMRTRLIWDGIDNDXXXXXXXXXXXXXDFYNNDSARLDVDAGLK 961
BLAST of mRNA_Ecto-sp13_S_contig5928.16465.1 vs. uniprot
Match: A0A836CC54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC54_9STRA) HSP 1 Score: 129 bits (324), Expect = 1.850e-26 Identity = 108/328 (32.93%), Postives = 173/328 (52.74%), Query Frame = 2
Query: 80 STKLRRMERELEAQMKDSLAESRALREKFQDDLECMQQDAQ-------RRLVEEKAKWKEYILCAEREKTDAIQQAEFLQEQLIASAHEIWIARDRIFQLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTVAGSRRLADAVERQDSALAEVRRDSAQLRDQRDRLAQDSAMLGIKLHQLRKKQAAGRLLHALDLARYRSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCRDARRRLDAL 1042
+ +L R+E L Q+++ L E+ + ++ + +Q +A+ RR ++ K E + R + ++AE LQ+QL+ + ++ ++R R LES ++ PPQ VER DP A ++ +LRDK++ + R QR A ++ EA+GRE A QRD+D ARH+LLT+QGSLAE + EN L RELE+ER++ VA RR A++ E +ALA R + LR QRD + +A +L +L + +AA R+L A A AL + ++ + + +E + + AE RC RRR + L
Sbjct: 5 AAQLLRLEHALAEQVQEDLEEAAISQAHHEEVVSKLQAEAEAAVSREHRRHRSKETKLHEALKRVARSRAALQREAEALQDQLVLVSAQLRLSRQRSLDLESAMGELKLRPPQQVERPDPDAAFQIAQLRDKLSGTETALRECQREARDSAEALGRERAAGLALQRDLDAARHKLLTLQGSLAEGARENGALMRELEAERVRAVAQQRRAAESEEALAAALAAARAAADGLRSQRDAFCEAAATSAARLRRLSRAEAARRVLQACARRTAAVRAAALHRWSLNAALSAAADQRRVMEAQRRAEAEAQVDAAESAERRCLALRRRCEEL 332
BLAST of mRNA_Ecto-sp13_S_contig5928.16465.1 vs. uniprot
Match: A0A7S2SEX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEX3_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.960e-14 Identity = 101/373 (27.08%), Postives = 154/373 (41.29%), Query Frame = 2
Query: 2216 LPRLVLSLRAAVGEELYAVGERLLRCVEADHRE---IHG-----RSYHPVPITPAEREQFNVCLEDAARGRLRRVVLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRMNGWTCGGXXXXXDGGGCLRDTRPRSARNVKEGQDEISSLTTGPLSTPSEKARAARFLRDRLVPLLENAADAWGGHRQPWQNTPCTVGRRAATESDTSRFQRRTTVLTR-------QKNNPH-------------------RLRRGNGDETGLSSPRRGRLCCL---DSGAGPRKFWETVAGPRLAEA---SWNVDIKALEQQLWDLAMLVRGPDLRGHRERHQGLALNRCELLRRTLDVRVFEVLLLYTRTRLIWDGI--ENDD 3208
LP +V LR + +E+Y VGE L R VEAD RE + G R P P+ + E F+ L ++A+G LR ++L +LR ES R + + R + T + R + W R +R ++ S P E L R+ +L+ W HR+ + T S + TT T Q ++P R RRG T L++ R R L D+GAGP++FW+ + P+ + + LE +W L +LVR D R +GL L R E R+ LD+R++E+LLLY R L+ + + E++D
Sbjct: 187 LPEMVGILRKRLADEVYKVGEALFRVVEADFREPAVLTGLKKTFRKRRPKPVDVTQLEHFHKRLTESAKGSLRWLLLIYLRTYESLRE--LFERRAELSATDEER----DRW---------------RLSRLEPPKSPGTATSPFKSYRAAPFDDV-EPPEVLSVLEKRITGVLDEIRRVWNSHRRAAATSMQGAAETMGTPGFDSWMEGTTTADTADQDGADGQPDDPSSFTYVPGDRAGYLHTCRHIRTRRGCAHCTQLANQERRRRLALGFIDTGAGPKEFWQNI-NPKKNDTFRGKGTPSAEKLEAHMWRLVLLVRCQD------RKKGLRLARHESQRKLLDMRIYELLLLYMRQELVEEELIRESED 530
BLAST of mRNA_Ecto-sp13_S_contig5928.16465.1 vs. uniprot
Match: A0A7R9UDJ3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDJ3_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 6.580e-9 Identity = 97/371 (26.15%), Postives = 141/371 (38.01%), Query Frame = 2
Query: 2213 DLPRLVLSLRAAVGEELYAVGERLLRCVEADHREI-----------HGRSYHPVPITPAEREQFNVCLEDAARGRLRRVVLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRMNGWTCGGXXXXXDGGGCLRDTRPRSARNVKEGQDE--ISSLTTGPLSTPSEKARAA---RFLRDRLVPLLENAADAWGGHR-----QPWQNTPCTVGRRAA-----------------TESDTSRFQRRTTVLTRQKNNPHRLRRGNGDETGLSSPRRGRLC-----CLDSGAGPRKFWETVAGPRLAEASWNVDIKALEQQLWDLAMLVRGPDLRGHRERHQGLALNRCELLRRTLDVRVFEVLLLYTRTRLIWDGI 3196
+L ++ LR E LY E L++ V+AD RE+ GR P+ + RE F++ L+D +LR L +LR E VE+ GG DG TR SA + + + I L G + ARA + L +RL P+LE+A W R Q P + A +ES + Q R V N TG++ R LD+GAGPR+FW + P + + LEQ +W L +LVR D R +GL L R E +RR LD R+ E +L+ + L++ +
Sbjct: 664 ELSDVMSRLRLRFAEALYDAIETLMKAVDADWRELPSPMQGAARGARGRRA-PLEMRRQTREGFHMLLQDLLGSKLRYWALIYLRTHEML-----------VER--------------GGSAQGTDG------TRRSSASSTEASAERQRIDDLVDGASDLHKKAARAREALKLLEERLDPVLEDAKLVWHNRRCSIADLDHQTAPRARSKSAGRARXXXXXXXXXXXXXXSESRKWKQQMRCPVCI-----------SNPKATGIADHRASEAANASGNFLDTGAGPREFWMAITPPLKIR---SFSLAELEQMMWRLVLLVRCQD------REKGLKLFRAEAMRRLLDSRLAEYVLVMLQKSLVYKDL 982
BLAST of mRNA_Ecto-sp13_S_contig5928.16465.1 vs. uniprot
Match: A0A6H5KVN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN0_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 8.910e-8 Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 2
Query: 122 MKDSLAESRALREKFQDDLECMQQDAQRRLVEEK 223
MKDSLAES+ALREKFQ DLECMQQDAQRRLVEEK
Sbjct: 4 MKDSLAESQALREKFQHDLECMQQDAQRRLVEEK 37 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5928.16465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5928.16465.1 >prot_Ecto-sp13_S_contig5928.16465.1 ID=prot_Ecto-sp13_S_contig5928.16465.1|Name=mRNA_Ecto-sp13_S_contig5928.16465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1089bp MSLTADCVSAVGNYASPSTKLRRMERELEAQMKDSLAESRALREKFQDDLback to top mRNA from alignment at Ecto-sp13_S_contig5928:1412..8561- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5928.16465.1 ID=mRNA_Ecto-sp13_S_contig5928.16465.1|Name=mRNA_Ecto-sp13_S_contig5928.16465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5928:1412..8561- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5928:1412..8561- >mRNA_Ecto-sp13_S_contig5928.16465.1 ID=mRNA_Ecto-sp13_S_contig5928.16465.1|Name=mRNA_Ecto-sp13_S_contig5928.16465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5928:1412..8561- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |