mRNA_Ecto-sp13_S_contig59276.16464.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59276.16464.1
Unique NamemRNA_Ecto-sp13_S_contig59276.16464.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59276.16464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59276contigEcto-sp13_S_contig59276:1..846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size363
Hectar predicted targeting categoryother localisation
Exons3
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463823.5971494-CDS-Ecto-sp13_S_contig59276:0..851681463823.5971494-CDS-Ecto-sp13_S_contig59276:0..85Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59276 1..85 -
1681463823.608685-CDS-Ecto-sp13_S_contig59276:262..4381681463823.608685-CDS-Ecto-sp13_S_contig59276:262..438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59276 263..438 -
1681463823.6232774-CDS-Ecto-sp13_S_contig59276:744..8461681463823.6232774-CDS-Ecto-sp13_S_contig59276:744..846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59276 745..846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59276.16464.1prot_Ecto-sp13_S_contig59276.16464.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59276 1..846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59276.16464.1

>prot_Ecto-sp13_S_contig59276.16464.1 ID=prot_Ecto-sp13_S_contig59276.16464.1|Name=mRNA_Ecto-sp13_S_contig59276.16464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
SISEAPKLFSDGEFQAVKRIQGGLKVLVLRKRLQERITARNREREVRAAI
RVQAIFRGIAARASLPALREQHGVSARLKRTYKLFKRELRSKGFPVHLYR
TKDGALRRVILKPDNKLTSLC
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mRNA from alignment at Ecto-sp13_S_contig59276:1..846-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59276.16464.1 ID=mRNA_Ecto-sp13_S_contig59276.16464.1|Name=mRNA_Ecto-sp13_S_contig59276.16464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59276:1..846- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTATTTCGGAGGCGCCGAAGCTCTTCAGCGACGGTGAGTTCCAGGCGGT
CAAGCGGATACAAGGGGGCCTTAAAGTGCTGGTTCTGCGCAAGAGATTAC
AGGTGGGTAGTTGCTTTGGACATTGGTCTAAGGCCCGCAGAATCCGGGTA
CGTACGTAAGAGTTACCTATCTACGGAGAAGTGAATGCCAAAGGCTTTTT
AGTCGCCCATGTTGATGCTGCTATGGTGACCTTTCTTCACCAAAGACTTG
GCAGCATTACCCAGCGTTGCAGCGTGTGCTTGTCTTCTCCCACCAAAGCG
TTGGGTTGGACATCGAGGGCCGAACCACCTCTCGCCGATATGTATTCAAT
GATGTCGTAATATACGCAAGTGACCATCCCACTTCCTGTGTGTCCCACGC
ATCCGAAGGAACGAATCACAGCGAGAAACCGCGAGCGTGAGGTTAGGGCT
GCCATTCGCGTGCAAGCGATTTTCCGGGGAATAGCCGCAAGAGCTTCGCT
TCCAGCCCTGCGTGAGCAACACGGTGTTAGCGCACGCTTAAAGAGGACGT
ACAAGCTCTTCAAGAGAGAACTTCGTAGCAAGGGGTGAGGGGAGGTGAAC
ATTGGAAGGACAGAGTACACGTGCGAAGAGTATCCAATGAAAACGAAAAG
CTGATGGGAGCTTGGTGTCTTTAGTACAACTGTGTAGCAGTTGCCAAGCA
ATCTCAGCAATGGGCTATTGACAGCACATGACTCTGACAATAGCTCACCA
TTGCGTTACAGGTTCCCCGTACACCTGTACCGCACAAAGGATGGAGCATT
GCGTAGGGTGATCCTCAAGCCGGACAATAAGCTGACCAGTCTCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59276:1..846-

>mRNA_Ecto-sp13_S_contig59276.16464.1 ID=mRNA_Ecto-sp13_S_contig59276.16464.1|Name=mRNA_Ecto-sp13_S_contig59276.16464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59276:1..846- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTATTTCGGAGGCGCCGAAGCTCTTCAGCGACGGTGAGTTCCAGGCGGT
CAAGCGGATACAAGGGGGCCTTAAAGTGCTGGTTCTGCGCAAGAGATTAC
AGGAACGAATCACAGCGAGAAACCGCGAGCGTGAGGTTAGGGCTGCCATT
CGCGTGCAAGCGATTTTCCGGGGAATAGCCGCAAGAGCTTCGCTTCCAGC
CCTGCGTGAGCAACACGGTGTTAGCGCACGCTTAAAGAGGACGTACAAGC
TCTTCAAGAGAGAACTTCGTAGCAAGGGGTTCCCCGTACACCTGTACCGC
ACAAAGGATGGAGCATTGCGTAGGGTGATCCTCAAGCCGGACAATAAGCT
GACCAGTCTCTGC
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