mRNA_Ecto-sp13_S_contig5925.16461.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5925.16461.1
Unique NamemRNA_Ecto-sp13_S_contig5925.16461.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5925.16461.1 vs. uniprot
Match: D7G3D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-20
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = -3 
Query:    2 QGDLLATLDTAEDSIAPLADTVAEHQLAAAMESERFDETLRKLDNELKTWRQAARADLEFCER 190
            +GDLLA LDTAED+IA L DTVAE QLAAAMESERFD+ LR+LDNELKT R+AARA+LEFCER
Sbjct:  263 EGDLLAKLDTAEDTIAFLTDTVAEQQLAAAMESERFDQALRQLDNELKTSRRAARAELEFCER 325
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BLAST of mRNA_Ecto-sp13_S_contig5925.16461.1 vs. uniprot
Match: D7FKY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKY1_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.340e-19
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = -3 
Query:    8 QGDLLATLDTAEDSIAPLADTVAEHQLAAAMESERFDETLRKLDNELKTWRQAARADLEFC 190
            +GDLLA +DTAED+IA L DTVAE QLAAA ESERF++  R+LDN+LKT R+AARA+LEFC
Sbjct:   49 EGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFC 109
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BLAST of mRNA_Ecto-sp13_S_contig5925.16461.1 vs. uniprot
Match: A0A6H5JBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW0_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.190e-18
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = -3 
Query:    2 QGDLLATLDTAEDSIAPLADTVAEHQLAAAMESERFDETLRKLDNELKTWRQAARADLEFCER 190
            +G+LLA LDTAE +IA L DTVAE QLAAAMESERFD+ LR+LDNEL+T RQAARA+LE CER
Sbjct:  158 EGELLAKLDTAEYTIASLTDTVAEQQLAAAMESERFDQALRQLDNELQTSRQAARAELELCER 220
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BLAST of mRNA_Ecto-sp13_S_contig5925.16461.1 vs. uniprot
Match: D7FRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE6_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.040e-18
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = -3 
Query:    2 QGDLLATLDTAEDSIAPLADTVAEHQLAAAMESERFDETLRKLDNELKTWRQAARADLEFCER 190
            +GDL A LDTA D+IA L DTVAE Q+AAAME ERF++ LR+LDNELKT RQAARA+LEFCER
Sbjct:  247 EGDLRAKLDTAGDTIASLTDTVAEQQMAAAMECERFEQALRQLDNELKTSRQAARAELEFCER 309
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5925.16461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3D5_ECTSI1.060e-2080.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKY1_ECTSI4.340e-1972.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW0_9PHAE1.190e-1876.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE6_ECTSI2.040e-1874.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5925contigEcto-sp13_S_contig5925:2349..2696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463823.398943-CDS-Ecto-sp13_S_contig5925:2348..26961681463823.398943-CDS-Ecto-sp13_S_contig5925:2348..2696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5925 2349..2696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5925.16461.1prot_Ecto-sp13_S_contig5925.16461.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5925 2349..2696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5925.16461.1

>prot_Ecto-sp13_S_contig5925.16461.1 ID=prot_Ecto-sp13_S_contig5925.16461.1|Name=mRNA_Ecto-sp13_S_contig5925.16461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
PSHRTRGPLERLASKSSARCRACAGSRQTARTPSRRPAGARPRCRPRGRC
CPPRCRALPGGPPGRPGRPLLVRSGRRQDIVVGQLQDKNFLALYCLECLW
WSGVIGQVNERGLVV*
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mRNA from alignment at Ecto-sp13_S_contig5925:2349..2696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5925.16461.1 ID=mRNA_Ecto-sp13_S_contig5925.16461.1|Name=mRNA_Ecto-sp13_S_contig5925.16461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5925:2349..2696+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCTCTCACAGAACTCGAGGTCCGCTCGAGCGGCTTGCCTCCAAGTCTTC
AGCTCGTTGTCGAGCTTGCGCAGGGTCTCGTCAAACCGCTCGGACTCCAT
CGCGGCGGCCAGCTGGTGCTCGGCCACGGTGTCGGCCAAGGGGGCGATGC
TGTCCTCCGCGGTGTCGAGCGTTGCCAGGAGGTCCCCCTGGCCGTCCGGG
CCGACCTCTCCTTGTCAGAAGCGGCCGTCGACAGGACATTGTTGTTGGTC
AGCTGCAGGACAAGAATTTTCTTGCGCTGTATTGTCTCGAGTGCCTCTGG
TGGTCAGGGGTCATAGGACAGGTAAACGAGAGGGGATTGGTCGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5925:2349..2696+

>mRNA_Ecto-sp13_S_contig5925.16461.1 ID=mRNA_Ecto-sp13_S_contig5925.16461.1|Name=mRNA_Ecto-sp13_S_contig5925.16461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5925:2349..2696+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCTCTCACAGAACTCGAGGTCCGCTCGAGCGGCTTGCCTCCAAGTCTTC
AGCTCGTTGTCGAGCTTGCGCAGGGTCTCGTCAAACCGCTCGGACTCCAT
CGCGGCGGCCAGCTGGTGCTCGGCCACGGTGTCGGCCAAGGGGGCGATGC
TGTCCTCCGCGGTGTCGAGCGTTGCCAGGAGGTCCCCCTGGCCGTCCGGG
CCGACCTCTCCTTGTCAGAAGCGGCCGTCGACAGGACATTGTTGTTGGTC
AGCTGCAGGACAAGAATTTTCTTGCGCTGTATTGTCTCGAGTGCCTCTGG
TGGTCAGGGGTCATAGGACAGGTAAACGAGAGGGGATTGGTCGTGTGA
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