mRNA_Ecto-sp13_S_contig5924.16457.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Match: D7FPJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ1_ECTSI) HSP 1 Score: 358 bits (920), Expect = 1.550e-123 Identity = 174/178 (97.75%), Postives = 177/178 (99.44%), Query Frame = 1
Query: 4 RVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSALTPLLESPAKKGDAGARPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDFTVSQVLGIVDSMTEDLSGGFYAFDGSRIVW 537
RVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLV+ALTPLLESPAKKGD GA+PPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPD+TVSQVLGIVDSMTEDLSGGFYAFDGSRIVW
Sbjct: 118 RVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVAALTPLLESPAKKGDDGAKPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDYTVSQVLGIVDSMTEDLSGGFYAFDGSRIVW 295
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Match: A0A836C8A3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A3_9STRA) HSP 1 Score: 244 bits (623), Expect = 1.800e-78 Identity = 115/178 (64.61%), Postives = 142/178 (79.78%), Query Frame = 1
Query: 4 RVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSALTPLLESPAKKGDAGARPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDFTVSQVLGIVDSMTEDLSGGFYAFDGSRIVW 537
R+D LFNVAG+LGDG+ TPGPERS+ A+ RDWLRH++EVN IGP+ML A+ P L + G A+ PSVVVNFSARVGSI DN LGGWHSYRMSKSALN ATK +++EL+R+ WAF+YHPGTTDT LS PFQANVKPEKLFTP FTV ++L + D+M + +GGFY + G+ ++W
Sbjct: 116 RLDALFNVAGLLGDGRATPGPERSLGAIQRDWLRHSMEVNVIGPVMLAQAMAPHLRT---TGQGRAKTPSVVVNFSARVGSISDNRLGGWHSYRMSKSALNQATKCMALELKRQGTWAFAYHPGTTDTDLSRPFQANVKPEKLFTPAFTVGRMLDLCDNMDQQHTGGFYDYSGTFLLW 290
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Match: A0A7S3XL31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL31_HETAK) HSP 1 Score: 233 bits (593), Expect = 2.000e-75 Identity = 113/179 (63.13%), Postives = 134/179 (74.86%), Query Frame = 1
Query: 1 QRVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSALTPLLESPAKKGDAGARPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDFTVSQVLGIVDSMTEDLSGGFYAFDGSRIVW 537
QRVD LFNVAGVLGDG+ TPGPERS+RA+DR W TLE NT+G +ML AL PLL + RPP+VV N SARVGSI DN LGGW+SYR+SK+ALNMAT+ +++ELRR VW + HPGTTDT LS PFQANV+PEKLF FT +L +VDS+ E +GGFYA+DGS I W
Sbjct: 5 QRVDGLFNVAGVLGDGRTTPGPERSLRAVDRAWFSRTLETNTVGHVMLTQALLPLLVTKGGGAKVPGRPPAVVANVSARVGSIEDNNLGGWYSYRISKAALNMATRTMALELRRSGVWCVALHPGTTDTDLSRPFQANVRPEKLFARAFTARSLLDVVDSLQEKDTGGFYAYDGSLIPW 183
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Match: A0A7S2F9C9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9C9_9STRA) HSP 1 Score: 233 bits (595), Expect = 4.670e-75 Identity = 112/183 (61.20%), Postives = 138/183 (75.41%), Query Frame = 1
Query: 1 QRVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSALTPLLESP----AKKGDAGARPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDFTVSQVLGIVDSMTEDLSGGFYAFDGSRIVW 537
QR D+L NVAG+L D + PER+++++DR+W TLEVNT+GP+ML AL PLL S AK RPPSVV N SARVGSIGDNG+GGW+SYR+SK+ALNMATK +S+EL+R VW + HPGTTDTGLS+PFQ NVKPEKLFT FTVSQ+LG+V+SM +G F+A+DG I W
Sbjct: 48 QRCDMLLNVAGILHDEAHPAAPERALKSVDREWFSKTLEVNTVGPLMLAQALEPLLRSTGRGAAKTASGETRPPSVVANLSARVGSIGDNGMGGWYSYRISKAALNMATKNMSLELKRSGVWCVTLHPGTTDTGLSKPFQKNVKPEKLFTTKFTVSQLLGVVESMDVSHTGSFFAWDGQEIEW 230
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Match: A0A7R9ZQC0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQC0_9STRA) HSP 1 Score: 204 bits (518), Expect = 6.980e-64 Identity = 96/179 (53.63%), Postives = 129/179 (72.07%), Query Frame = 1
Query: 4 RVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSALTPLLESPAKKG---DAGARPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDFTVSQVLGIVDSMTEDLSGGFYAFDGSRI 531
RVDLL NVAG+LGDG+ TPGPERS+ +DR+W+ + +N GP+ML LT +++ +K AR P+V+ N SARVGSI DNGLGGW+SYRMSK+ALN AT+ +S EL+R ++W + HPGTT+T LS+PFQANV+ +LF DFTV +L ++DSM++ SGG Y + G I
Sbjct: 13 RVDLLLNVAGILGDGQTTPGPERSIAKIDREWMEKSFALNLYGPVMLSKELTDIMKQSRRKSANASGNARAPAVIANLSARVGSISDNGLGGWYSYRMSKAALNQATRTMSNELKRSQIWCIALHPGTTNTDLSKPFQANVQKGRLFPVDFTVESLLDVIDSMSDKDSGGLYDWAGKAI 191
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Match: A0A7S2UED2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UED2_9STRA) HSP 1 Score: 208 bits (530), Expect = 7.140e-64 Identity = 99/176 (56.25%), Postives = 131/176 (74.43%), Query Frame = 1
Query: 4 RVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSALTPLLESPAKKGDAGARPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDFTVSQVLGIVDSMTEDLSGGFYAFDGSRI 531
RVD+L NVAG+LGDG +TPGPERS+ +DRDW+ ++ VN IGP+ML AL+PL+ SP ++G R +++ N SARVGSI DNGLGGW+SYR SK+ALN AT+ +S EL+R+ W + HPGTTDT LS+PFQ NV+ E+LF +FTV ++L ++DSM E SGG Y + G I
Sbjct: 155 RVDVLLNVAGLLGDGTSTPGPERSLAKLDRDWIEKSMAVNVIGPVMLSQALSPLMASP-QRGKEDKRATTLIANLSARVGSISDNGLGGWYSYRFSKAALNQATRTMSHELKRKGTWTIALHPGTTDTDLSKPFQRNVQAERLFPVEFTVEKLLDVMDSMEEQNSGGLYDWAGKAI 329
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Match: B7FYH7_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYH7_PHATC) HSP 1 Score: 205 bits (522), Expect = 1.420e-63 Identity = 98/180 (54.44%), Postives = 128/180 (71.11%), Query Frame = 1
Query: 4 RVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSALTPLLESPAKK----GDAGARPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDFTVSQVLGIVDSMTEDLSGGFYAFDGSRI 531
RVD+L NVAG+LGD K TPGPERS+ ++RDW TL +NTIGP+ML L+PL+ K+ D R +V+ + SARVGSI DNGLGGW+SYRMSKSALN AT+ +++E++R W + HPGTTDT LS+PFQ+NVK LF DFT +++ ++DSMTE+ SGG Y + G I
Sbjct: 79 RVDMLLNVAGLLGDAKTTPGPERSLAKVERDWFEKTLAINTIGPVMLSKELSPLMMQRRKRKSSDNDTETRAVAVIASLSARVGSISDNGLGGWYSYRMSKSALNQATRTMALEMKRCSTWCIALHPGTTDTDLSKPFQSNVKDGSLFPVDFTTEKLMNVIDSMTENNSGGLYDWAGQAI 258
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Match: A0A448YYN6_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYN6_9STRA) HSP 1 Score: 207 bits (528), Expect = 4.200e-63 Identity = 102/187 (54.55%), Postives = 128/187 (68.45%), Query Frame = 1
Query: 4 RVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSALTPLLESPAKKGDAGA-----------RPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDFTVSQVLGIVDSMTEDLSGGFYAFDGSRI 531
RVDLL NVAG+LGDGKNTPGPERSV ++R+W+ T +VN IGP+ML L PL+ + G A R VV N SARVGSI DNGLGGW+SYRMSKSALN AT+ ++ EL+R+ VW + HPGTTDT LS+PFQ NV+ ++LF +FTV ++ ++DSM E SGG Y + G I
Sbjct: 182 RVDLLLNVAGILGDGKNTPGPERSVAKIEREWMEKTFQVNVIGPVMLAKELAPLMTQARRTGRRKADSSDETLSEKQRAVGVVANLSARVGSISDNGLGGWYSYRMSKSALNQATRTLANELKRKSVWCIALHPGTTDTDLSKPFQKNVQKDRLFPVEFTVDSLMNVIDSMEEHNSGGLYDWAGKAI 368
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Match: A0A0G4HBC3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HBC3_9ALVE) HSP 1 Score: 203 bits (516), Expect = 6.550e-62 Identity = 104/179 (58.10%), Postives = 129/179 (72.07%), Query Frame = 1
Query: 1 QRVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSALTPLLESPAKKGDAGARPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDFTVSQVLGIVDSMTEDLSGGFYAFDGSRIVW 537
+++ +LFNVAGVLGDG PGPER++ + R+WLRH+LE N I +M+ AL PLL KG +G+ P + N SARVGSIGDNGLGGW+SYRMSKSALNM TK SIELRR++ S HPGTT+T LS PFQ NVKPEKLF ++V +L +V S E+ SG F+A+DGS I W
Sbjct: 148 KKLKMLFNVAGVLGDGATVPGPERALSKIQREWLRHSLETNLISHVMVTQALAPLL-----KGKSGS--PCKIANLSARVGSIGDNGLGGWYSYRMSKSALNMFTKTASIELRRQKCVVVSLHPGTTNTDLSVPFQKNVKPEKLFPRWYSVRCLLDVVWSAKEEESGRFFAYDGSEIPW 319
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Match: A0A7S2YRX8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YRX8_9STRA) HSP 1 Score: 203 bits (517), Expect = 2.730e-61 Identity = 105/184 (57.07%), Postives = 131/184 (71.20%), Query Frame = 1
Query: 4 RVDLLFNVAGVLGDG-KNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSALTPLL-----ESPAKKGDAG--ARPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDFTVSQVLGIVDSMTEDLSGGFYAFDGSRI 531
RVD LFNVAG+LGDG K TPGPERS+ MDR WL T+ VN IGP+ML L+ ++ +K+GD RP +VVVN SARVGSI DNGLGGW+SYRMSKSALN AT+ +++EL+R+ WA + HPGTT+T LS PFQANVK LF +FTV Q+L +VD + + SGGFY + G +
Sbjct: 199 RVDGLFNVAGLLGDGGKTTPGPERSISKMDRGWLEKTMAVNVIGPVMLTKELSSMIMTRRKRQRSKEGDIADTERPIAVVVNLSARVGSIADNGLGGWYSYRMSKSALNQATRTMALELKRQSAWAVALHPGTTNTDLSRPFQANVKEGSLFPVEFTVGQLLDLVDRLEDKHSGGFYDWAGQSL 382 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5924.16457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5924.16457.1 >prot_Ecto-sp13_S_contig5924.16457.1 ID=prot_Ecto-sp13_S_contig5924.16457.1|Name=mRNA_Ecto-sp13_S_contig5924.16457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp QRVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVSback to top mRNA from alignment at Ecto-sp13_S_contig5924:81..977+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5924.16457.1 ID=mRNA_Ecto-sp13_S_contig5924.16457.1|Name=mRNA_Ecto-sp13_S_contig5924.16457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=897bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5924:81..977+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5924:81..977+ >mRNA_Ecto-sp13_S_contig5924.16457.1 ID=mRNA_Ecto-sp13_S_contig5924.16457.1|Name=mRNA_Ecto-sp13_S_contig5924.16457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5924:81..977+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |