mRNA_Ecto-sp13_S_contig5924.16458.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5924.16458.1
Unique NamemRNA_Ecto-sp13_S_contig5924.16458.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5924.16458.1 vs. uniprot
Match: A0A6H5KYE5_9PHAE (FHA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYE5_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.840e-47
Identity = 271/353 (76.77%), Postives = 278/353 (78.75%), Query Frame = 3 
Query:  168 PSTKRHDKNSRDSSRSGMGGRKRNRSEASLASXXXXXXXGSKNRXHGXXXSSKERRGTRTRSVXXXRERKDNKAAKDRAGGWSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RSKKSSEGGRAKSPANGKGAXXXXXXXXXXXXXXXXXXXXXXAA-VGSRGETVGKGANSTHSERXXXXXXXXXXDRTKESGSAKDGTNKGNKSAEVSRDRGSGSPRGSSKSGTSNKAVKKASDTKPAAKTRRDSRKTTKGKAGEDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKKGGSGKGSRRKS 1217
            PSTKRH+K+SRDSSRSGMGGRK     ASLAS  XXXXXGSKNR + XXX             XXX   KDNKAAKDRAGG SS    XXXXXXXXXXXXXX                     XXXXXXXXXXXXXXXXXXXXXXX  RSKKSSEGGRAKS AN KGA  XXXXXXXXXXXXXXXXXXXXAA VGSR ETVGKGA STHSER  XXXXXXXXDRTKESGS KDGTN+GNKSAEVSRDRGSGSPRGSSKSGTS KAVKKASDTKPAAKT  DS+KTTKGK  ED++    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KKGGSGK SRRKS
Sbjct:  904 PSTKRHEKDSRDSSRSGMGGRKXXXXXASLASRSXXXXXGSKNRRNXXXXXXXXXXXXXXXXXXXXXXXKDNKAAKDRAGGGSSRERAXXXXXXXXXXXXXXNSRGGPSGTTRKTSDRGRRDAXXXXXXXXXXXXXXXXXXXXXXXSTRSKKSSEGGRAKSQANRKGAAAXXXXXXXXXXXXXXXXXXXXAAAVGSRDETVGKGAKSTHSERAKXXXXXXXXDRTKESGSGKDGTNQGNKSAEVSRDRGSGSPRGSSKSGTSKKAVKKASDTKPAAKTGWDSKKTTKGKTSEDDKGSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKGGSGKSSRRKS 1256
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5924.16458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYE5_9PHAE4.840e-4776.77FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5924contigEcto-sp13_S_contig5924:6541..8415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1521
Hectar predicted targeting categoryother localisation
Exons2
Cds size1002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463823.231955-UTR-Ecto-sp13_S_contig5924:6540..68411681463823.231955-UTR-Ecto-sp13_S_contig5924:6540..6841Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5924 6541..6841 -
1681463823.2695-UTR-Ecto-sp13_S_contig5924:8197..84151681463823.2695-UTR-Ecto-sp13_S_contig5924:8197..8415Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5924 8198..8415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463823.2430787-CDS-Ecto-sp13_S_contig5924:6841..77781681463823.2430787-CDS-Ecto-sp13_S_contig5924:6841..7778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5924 6842..7778 -
1681463823.2540689-CDS-Ecto-sp13_S_contig5924:8132..81971681463823.2540689-CDS-Ecto-sp13_S_contig5924:8132..8197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5924 8133..8197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5924.16458.1prot_Ecto-sp13_S_contig5924.16458.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5924 6842..8197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5924.16458.1

>prot_Ecto-sp13_S_contig5924.16458.1 ID=prot_Ecto-sp13_S_contig5924.16458.1|Name=mRNA_Ecto-sp13_S_contig5924.16458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp
MGGRKRNRSEASLASRSRSRERGSKNRRHGKRESSKERRGTRTRSVSRSR
ERKDNKAAKDRAGGWSSREGARRREKTRSRSRSPSNSREGPSGTTRKTSD
RGRRDAKRAASRSRSRSRTRRDSSTERPSRSKKSSEGGRAKSPANGKGAA
AKEKAEGGRGESRTSKEASSAAAVGSRGETVGKGANSTHSERAKSTHGEG
AKDRTKESGSAKDGTNKGNKSAEVSRDRGSGSPRGSSKSGTSNKAVKKAS
DTKPAAKTRRDSRKTTKGKAGEDEQGSRSSLERESSKTRESGRHRRSRSR
SPSGKRTERRRKARSPSREEKKGGSGKGSRRKS*
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mRNA from alignment at Ecto-sp13_S_contig5924:6541..8415-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5924.16458.1 ID=mRNA_Ecto-sp13_S_contig5924.16458.1|Name=mRNA_Ecto-sp13_S_contig5924.16458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1875bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5924:6541..8415- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAAAGCAGAAGCCGGAGCAGGCCTCGTGAGCGCGACGGACAGCGCCGA
GGCCACCGAAAGGGCAAAGATGACGGTCGTCGTGCCGGCAAGGAGAGGGA
CCAGAGGAGAGGAAGAGGAGGGAGAAGGAACGGTCCAAGCCGATCCCGGT
CCCGTTCGCGCTCTCCGCCATCGACAAAGAGACATGATAAGAACAGCAGG
GATAGCAGCCGCAGTGGCATGGGAGGAAGGAAGAGGAACAGGAGCGAGGC
GAGTCTGGCAAGCCGCAGCCGCAGCCGTGAGAGGTACGTTTTAGGCGGCC
ATGGAATTGTGTTTGTTCGGCTTTCGTAGAGGCGGTCGAAATTGGTGGTA
GCCTATTTGAGCGGCAATGTGAGTTGGGCGGTGCGTTTGCTCGATGTGCC
ACACCTCCCGATCATCCTCCATGATTTATGATCACCATCCATCATGTCAG
GGCAGTATCCATCAGGAAATCATGTCATGTGTTGTCGTGTAGCCTTTGAT
CCATCCGGAATGAAGATGCCTCCATGCACGGCTGAGTGTATGCCTCACTC
CCAATCTATTTCGTCGGGCATGACCTAAACCTGCAACCACTTGCAACACC
CGTTCCTCTTGCTCGCGCTTATGGACCGCCACCGTAGGGGTTCGAAGAAC
CGAAGACACGGCAAGAGGGAGAGCAGCAAAGAGCGGAGAGGCACGAGAAC
CCGAAGCGTCAGTCGGAGCCGCGAGCGCAAGGACAATAAGGCCGCGAAGG
ATCGCGCCGGCGGTTGGAGTAGTCGGGAGGGGGCCAGGCGGAGAGAGAAA
ACCCGCAGCCGCTCACGCAGCCCGAGCAACAGCCGCGAAGGGCCTAGCGG
AACTACAAGAAAAACCTCTGATCGTGGACGGCGGGACGCAAAGAGGGCGG
CAAGCAGGAGCAGGAGCCGAAGCCGCACCCGCAGAGACTCTTCCACAGAA
CGTCCTTCGCGGAGCAAGAAGTCGAGCGAAGGCGGCAGGGCCAAGAGTCC
GGCAAACGGAAAAGGAGCTGCTGCGAAGGAGAAGGCGGAGGGTGGTCGTG
GCGAAAGCCGTACCAGCAAGGAAGCGAGCTCGGCAGCCGCTGTCGGGAGC
CGTGGCGAAACGGTAGGCAAAGGTGCCAACAGCACGCACTCCGAGCGAGC
GAAGAGCACCCACGGTGAGGGTGCAAAAGACCGCACGAAGGAGTCTGGGA
GTGCCAAAGACGGCACCAATAAAGGCAACAAGTCTGCAGAAGTGAGCCGA
GATCGCGGTAGCGGCAGTCCTAGGGGGAGCAGCAAGTCCGGGACGAGCAA
CAAAGCCGTCAAGAAAGCATCGGACACGAAGCCTGCGGCGAAAACCAGGC
GGGATAGCAGGAAAACCACCAAGGGAAAGGCAGGCGAGGATGAGCAAGGA
AGCCGTAGCAGCCTAGAACGCGAGAGCAGCAAGACGCGGGAGTCGGGTCG
CCATCGCCGTAGCAGGAGCAGGTCGCCTTCCGGCAAACGCACAGAGCGCC
GACGGAAGGCGAGGTCGCCGTCGCGCGAAGAAAAGAAAGGCGGCAGCGGA
AAGGGCTCACGGAGGAAGTCGTGATAGTCTCCAGGCTTTGGTTTTGTCGC
TTGATTTCTGGTCGCATTATGTTGTCGTGACCCATGAAGGGCGGCAGGCA
ACTCCTAGTCGTAGGAATCTTCCACCAGATTTTTGTTTACTTGAGTAGAG
CTGCGTTTAAGTTGTGTACACTCTCGTTTTGTGTAGAAGGAAAAGGAGGG
GTGTCTGCGTGATAGTTACTGGGTGGCGGCTTCATCCTAAAGTTGTAGAC
TACTCGTATTGATTTATTTATTCGTACGAACGAGCTTCACTTTTGTTTTC
GTATCCGAGCTCCTTCTTGCGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5924:6541..8415-

>mRNA_Ecto-sp13_S_contig5924.16458.1 ID=mRNA_Ecto-sp13_S_contig5924.16458.1|Name=mRNA_Ecto-sp13_S_contig5924.16458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5924:6541..8415- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGAAGGAAGAGGAACAGGAGCGAGGCGAGTCTGGCAAGCCGCAG
CCGCAGCCGTGAGAGGGGTTCGAAGAACCGAAGACACGGCAAGAGGGAGA
GCAGCAAAGAGCGGAGAGGCACGAGAACCCGAAGCGTCAGTCGGAGCCGC
GAGCGCAAGGACAATAAGGCCGCGAAGGATCGCGCCGGCGGTTGGAGTAG
TCGGGAGGGGGCCAGGCGGAGAGAGAAAACCCGCAGCCGCTCACGCAGCC
CGAGCAACAGCCGCGAAGGGCCTAGCGGAACTACAAGAAAAACCTCTGAT
CGTGGACGGCGGGACGCAAAGAGGGCGGCAAGCAGGAGCAGGAGCCGAAG
CCGCACCCGCAGAGACTCTTCCACAGAACGTCCTTCGCGGAGCAAGAAGT
CGAGCGAAGGCGGCAGGGCCAAGAGTCCGGCAAACGGAAAAGGAGCTGCT
GCGAAGGAGAAGGCGGAGGGTGGTCGTGGCGAAAGCCGTACCAGCAAGGA
AGCGAGCTCGGCAGCCGCTGTCGGGAGCCGTGGCGAAACGGTAGGCAAAG
GTGCCAACAGCACGCACTCCGAGCGAGCGAAGAGCACCCACGGTGAGGGT
GCAAAAGACCGCACGAAGGAGTCTGGGAGTGCCAAAGACGGCACCAATAA
AGGCAACAAGTCTGCAGAAGTGAGCCGAGATCGCGGTAGCGGCAGTCCTA
GGGGGAGCAGCAAGTCCGGGACGAGCAACAAAGCCGTCAAGAAAGCATCG
GACACGAAGCCTGCGGCGAAAACCAGGCGGGATAGCAGGAAAACCACCAA
GGGAAAGGCAGGCGAGGATGAGCAAGGAAGCCGTAGCAGCCTAGAACGCG
AGAGCAGCAAGACGCGGGAGTCGGGTCGCCATCGCCGTAGCAGGAGCAGG
TCGCCTTCCGGCAAACGCACAGAGCGCCGACGGAAGGCGAGGTCGCCGTC
GCGCGAAGAAAAGAAAGGCGGCAGCGGAAAGGGCTCACGGAGGAAGTCGT
GA
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