mRNA_Ecto-sp13_S_contig5921.16454.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5921.16454.1
Unique NamemRNA_Ecto-sp13_S_contig5921.16454.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5921.16454.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 5.280e-47
Identity = 81/102 (79.41%), Postives = 85/102 (83.33%), Query Frame = 3 
Query:   42 VKHLHDIALDCRESNSRTSTTLHGNKLHMNRLKRAFWVEGVAGAARKAEEINRSQEPCWSIVRFLPPLPDFVFAFKRVKRPRDPPRKQETLQPAE-HDGAVI 344
            V+HL DIALDCRESN RTSTT HGN LHMNRLKRAF  +GVAGA RKAEEI+RSQEP W IVR LP LPDFVFAFK VKRPRD PRK ETLQPA   DGAV+
Sbjct:   22 VEHLDDIALDCRESNLRTSTTSHGNNLHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQPAVLFDGAVM 123
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BLAST of mRNA_Ecto-sp13_S_contig5921.16454.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.520e-41
Identity = 73/94 (77.66%), Postives = 77/94 (81.91%), Query Frame = 3 
Query:   42 VKHLHDIALDCRESNSRTSTTLHGNKLHMNRLKRAFWVEGVAGAARKAEEINRSQEPCWSIVRFLPPLPDFVFAFKRVKRPRDPPRKQETLQPA 323
            V+HL+ IALDCRESN  TSTTLHGN LHMNR K AFWVEGV GAA KAE +NRSQE  W+IVR LPPLPDFVFAFK  KRPRD  RK ETLQPA
Sbjct:   62 VEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAE-VNRSQESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPA 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5921.16454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPQ6_ECTSI5.280e-4779.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPN6_9PHAE1.520e-4177.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5921contigEcto-sp13_S_contig5921:6479..6828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size350
Hectar predicted targeting categoryother localisation
Exons1
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463823.0818737-CDS-Ecto-sp13_S_contig5921:6478..67031681463823.0818737-CDS-Ecto-sp13_S_contig5921:6478..6703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5921 6479..6703 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463823.093715-UTR-Ecto-sp13_S_contig5921:6703..68281681463823.093715-UTR-Ecto-sp13_S_contig5921:6703..6828Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5921 6704..6828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5921.16454.1prot_Ecto-sp13_S_contig5921.16454.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5921 6479..6703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5921.16454.1

>prot_Ecto-sp13_S_contig5921.16454.1 ID=prot_Ecto-sp13_S_contig5921.16454.1|Name=mRNA_Ecto-sp13_S_contig5921.16454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
MNRLKRAFWVEGVAGAARKAEEINRSQEPCWSIVRFLPPLPDFVFAFKRV
KRPRDPPRKQETLQPAEHDGAVID*
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mRNA from alignment at Ecto-sp13_S_contig5921:6479..6828-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5921.16454.1 ID=mRNA_Ecto-sp13_S_contig5921.16454.1|Name=mRNA_Ecto-sp13_S_contig5921.16454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=350bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5921:6479..6828- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTTGACAGGCTCGCCCAGCGAGCACAGGTTTGAGTATAAGTCAAGCAC
CTTCACGACATTGCCCTAGACTGTCGCGAAAGCAATTCGAGGACTTCCAC
TACATTGCACGGTAACAAGCTGCACATGAACAGGTTGAAGCGGGCCTTCT
GGGTTGAGGGCGTAGCAGGCGCGGCACGGAAAGCGGAGGAGATAAATCGA
TCACAGGAACCGTGCTGGAGCATCGTGCGTTTTCTGCCCCCGCTGCCTGA
TTTTGTGTTCGCGTTCAAGCGTGTCAAACGGCCACGAGACCCACCACGCA
AACAAGAGACGTTGCAACCTGCAGAGCACGACGGAGCAGTGATTGATTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5921:6479..6828-

>mRNA_Ecto-sp13_S_contig5921.16454.1 ID=mRNA_Ecto-sp13_S_contig5921.16454.1|Name=mRNA_Ecto-sp13_S_contig5921.16454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5921:6479..6828- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAGGTTGAAGCGGGCCTTCTGGGTTGAGGGCGTAGCAGGCGCGGC
ACGGAAAGCGGAGGAGATAAATCGATCACAGGAACCGTGCTGGAGCATCG
TGCGTTTTCTGCCCCCGCTGCCTGATTTTGTGTTCGCGTTCAAGCGTGTC
AAACGGCCACGAGACCCACCACGCAAACAAGAGACGTTGCAACCTGCAGA
GCACGACGGAGCAGTGATTGATTAA
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