prot_Ecto-sp13_S_contig59190.16452.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig59190.16452.1
Unique Nameprot_Ecto-sp13_S_contig59190.16452.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length84
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59190.16452.1 vs. uniprot
Match: D8LP64_ECTSI (EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP64_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.860e-22
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0 
Query:    1 MTLLRSLASTVSFVGETTINTXXXXXXXXXXXXXXXXXXXXXXXXXXLSQLVSVWRLVVTILTATLGETCYLATNGIGRFFDFF 84
            MTLLRSLASTVSFVGETTIN XXXXXXXXXXXXXXXXXXXXXXXXXX SQLVSVWRLVV I+TATLGETCYLATNGI R FDFF
Sbjct:    1 MTLLRSLASTVSFVGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLVSVWRLVVVIITATLGETCYLATNGIDRVFDFF 84
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BLAST of mRNA_Ecto-sp13_S_contig59190.16452.1 vs. uniprot
Match: Q8QNN4_ESV1K (EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN4_ESV1K)

HSP 1 Score: 94.7 bits (234), Expect = 7.300e-22
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0 
Query:    1 MTLLRSLASTVSFVGETTINTXXXXXXXXXXXXXXXXXXXXXXXXXXLSQLVSVWRLVVTILTATLGETCYLATNGIGRFFDFF 84
            MTLLRSLASTVSF+GETTIN XXXXXXXXXXXXXXXXXXXXXXXXXX  QLVSVWRLVVTILTATLGETCYLATNGIGR FDFF
Sbjct:   59 MTLLRSLASTVSFIGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVSVWRLVVTILTATLGETCYLATNGIGRVFDFF 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59190.16452.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP64_ECTSI4.860e-2292.86EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNN4_ESV1K7.300e-2294.05EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..48
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 75..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 49..53
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 29..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59190contigEcto-sp13_S_contig59190:1..252 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59190.16452.1mRNA_Ecto-sp13_S_contig59190.16452.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig59190 1..252 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig59190.16452.1 ID=prot_Ecto-sp13_S_contig59190.16452.1|Name=mRNA_Ecto-sp13_S_contig59190.16452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MTLLRSLASTVSFVGETTINTLSFIRETIFSILTFIVQTATNTVLFVLSQ
LVSVWRLVVTILTATLGETCYLATNGIGRFFDFF
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