mRNA_Ecto-sp13_S_contig59190.16452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59190.16452.1
Unique NamemRNA_Ecto-sp13_S_contig59190.16452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59190.16452.1 vs. uniprot
Match: D8LP64_ECTSI (EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP64_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.860e-22
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 MTLLRSLASTVSFVGETTINTXXXXXXXXXXXXXXXXXXXXXXXXXXLSQLVSVWRLVVTILTATLGETCYLATNGIGRFFDFF 252
            MTLLRSLASTVSFVGETTIN XXXXXXXXXXXXXXXXXXXXXXXXXX SQLVSVWRLVV I+TATLGETCYLATNGI R FDFF
Sbjct:    1 MTLLRSLASTVSFVGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLVSVWRLVVVIITATLGETCYLATNGIDRVFDFF 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59190.16452.1 vs. uniprot
Match: Q8QNN4_ESV1K (EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN4_ESV1K)

HSP 1 Score: 94.7 bits (234), Expect = 7.300e-22
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 1 
Query:    1 MTLLRSLASTVSFVGETTINTXXXXXXXXXXXXXXXXXXXXXXXXXXLSQLVSVWRLVVTILTATLGETCYLATNGIGRFFDFF 252
            MTLLRSLASTVSF+GETTIN XXXXXXXXXXXXXXXXXXXXXXXXXX  QLVSVWRLVVTILTATLGETCYLATNGIGR FDFF
Sbjct:   59 MTLLRSLASTVSFIGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVSVWRLVVTILTATLGETCYLATNGIGRVFDFF 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59190.16452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP64_ECTSI4.860e-2292.86EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNN4_ESV1K7.300e-2294.05EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59190contigEcto-sp13_S_contig59190:1..252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463822.974893-CDS-Ecto-sp13_S_contig59190:0..2521681463822.974893-CDS-Ecto-sp13_S_contig59190:0..252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59190 1..252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59190.16452.1prot_Ecto-sp13_S_contig59190.16452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59190 1..252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59190.16452.1

>prot_Ecto-sp13_S_contig59190.16452.1 ID=prot_Ecto-sp13_S_contig59190.16452.1|Name=mRNA_Ecto-sp13_S_contig59190.16452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MTLLRSLASTVSFVGETTINTLSFIRETIFSILTFIVQTATNTVLFVLSQ
LVSVWRLVVTILTATLGETCYLATNGIGRFFDFF
back to top

mRNA from alignment at Ecto-sp13_S_contig59190:1..252-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59190.16452.1 ID=mRNA_Ecto-sp13_S_contig59190.16452.1|Name=mRNA_Ecto-sp13_S_contig59190.16452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59190:1..252- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACACTTCTGCGATCACTTGCCTCCACGGTGTCCTTTGTTGGCGAGAC
CACCATCAATACACTTTCTTTCATCAGAGAGACAATATTCTCCATTCTGA
CATTCATCGTACAGACAGCGACAAACACCGTGCTGTTCGTTCTCAGCCAG
TTGGTGTCCGTTTGGAGACTGGTGGTTACCATACTCACCGCGACTCTTGG
CGAGACATGCTATCTTGCAACCAACGGCATTGGCAGGTTTTTCGACTTTT
TT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59190:1..252-

>mRNA_Ecto-sp13_S_contig59190.16452.1 ID=mRNA_Ecto-sp13_S_contig59190.16452.1|Name=mRNA_Ecto-sp13_S_contig59190.16452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59190:1..252- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACACTTCTGCGATCACTTGCCTCCACGGTGTCCTTTGTTGGCGAGAC
CACCATCAATACACTTTCTTTCATCAGAGAGACAATATTCTCCATTCTGA
CATTCATCGTACAGACAGCGACAAACACCGTGCTGTTCGTTCTCAGCCAG
TTGGTGTCCGTTTGGAGACTGGTGGTTACCATACTCACCGCGACTCTTGG
CGAGACATGCTATCTTGCAACCAACGGCATTGGCAGGTTTTTCGACTTTT
TT
back to top