prot_Ecto-sp13_S_contig5917.16449.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5917.16449.1
Unique Nameprot_Ecto-sp13_S_contig5917.16449.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length935
Homology
BLAST of mRNA_Ecto-sp13_S_contig5917.16449.1 vs. uniprot
Match: A0A8J2S8N8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8N8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.620e-5
Identity = 59/163 (36.20%), Postives = 81/163 (49.69%), Query Frame = 0
Query:  527 QRPPSRQKQAFPTHLADVVPYAAFQVEVPMTDEE----AKQLIEATRKTAVEQ-TRPPSRHKPPEQSLFLEVPETRRQIPPALSPSRRMLPHGGESCSALSPGVFSIDVPEAEASPSARDALGAIFALDRRHDNPDRDGFSVLQ-VQGPCPFRIEVTNSFVQA 683
            QRPPSRQK A+PTHL         + E   TD       K+   A+R+   EQ TRPPSR K P+++L L+        PP  SP +        S  A +P ++S +  +A  SPS R         DR HD P+ DGF+ +   + PCPF+I+V +    A
Sbjct:  285 QRPPSRQKGAYPTHL---------ETESTETDSPPPSPVKRPATASRQRRDEQPTRPPSRQKLPKRALVLDGVSG----PP--SPKKT----NAWSDKAPTPTLYSDESDDAPTSPSKRQPNSE----DRHHD-PEADGFTAIDGPRTPCPFKIQVQHGCEDA 423          
BLAST of mRNA_Ecto-sp13_S_contig5917.16449.1 vs. uniprot
Match: A0A067CD33_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CD33_SAPPC)

HSP 1 Score: 58.5 bits (140), Expect = 2.360e-5
Identity = 58/216 (26.85%), Postives = 76/216 (35.19%), Query Frame = 0
Query:  506 RKKELGCSRWVTNDEGVANFLQRPPSRQKQAFPTHLADVVPYAAFQVEVPMTDEEAKQLIEATRKTAVEQTRPPSRHKPPEQSLFLEVPETRRQIPPALSPSRRMLPHGGESCSALSPGVFSIDVPEAEASPSARDALGAIFALDRRHDNPDRDGFSVLQVQGPCPFRIEVTN----------SFVQAQPPKAPVDGETVVAPDARKAVQYRPPDP 711
            R    G SR  +  + +     RPPSRQ+ AFPTHL D              D+          +T     RPPSRHKP  Q                ++PS                   S ++ E     +         A  + HD P RDGF  +    P PFRIEVTN          S  +   P+ P     +   + RK +Q R  DP
Sbjct:  136 RNLSAGSSRQTSPADDMDEAFDRPPSRQRHAFPTHLVDAKD----------VDDXXXXXXRKVSRTTKRAHRPPSRHKPMAQE--------------PVTPS-------------------SCEINEQSLQDTINRFRSRRSARRQSHD-PRRDGFEAVDENVPLPFRIEVTNEDGTRKSTPSSRARRGRPRQPPPANVIAIDELRKTLQSRAEDP 307          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5917.16449.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8J2S8N8_9STRA1.620e-536.20Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A067CD33_SAPPC2.360e-526.85Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5917contigEcto-sp13_S_contig5917:1900..7695 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5917.16449.1mRNA_Ecto-sp13_S_contig5917.16449.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5917 1897..8064 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5917.16449.1 ID=prot_Ecto-sp13_S_contig5917.16449.1|Name=mRNA_Ecto-sp13_S_contig5917.16449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=935bp
MFDFHGGDYRGGTAPPTLKFSEHSLSDQRPPSADPHRYCEQDGGAAALPT
APIFRGQRGRGGGSTAAYKHSHHQSRSGWGKRGLKGRRPYDPTGPKTRPA
SRQVLSDLMDLNLALKFDKMGKQDSTGQPDEQLQQSHAGLATRTGTRHDG
GGATAAEAESSSTLFLDRQARQASRYSSPSERYKHVARARNSAILGVSNN
EQLYREDVSTSVKHAAVEKYTRWGDDMQSTTPCVPATTTCDVPLTISPSR
NSTAHTRNSSPADQGDELFNAAPKARDDSRSSALRSENTNTYRGTEGGDA
PQGFGLGSRSEVDIGVWTEYAEDREQGQHTPSQDTCSQQSEKDQRMWSAL
KNSLLSGSPRDVEESRFEFQNGRIDDGGNLDGGTETRDLEQLDLERSTMD
RTMRPHRVASARLLEKTQNSSVQAKVKQLRTFSASATRPRTRQAESASSV
WAGAGGILQCTGVRAELVSRNGDGQSSYNREAASGHSTFAGEAVNRCRES
VHQQARKKELGCSRWVTNDEGVANFLQRPPSRQKQAFPTHLADVVPYAAF
QVEVPMTDEEAKQLIEATRKTAVEQTRPPSRHKPPEQSLFLEVPETRRQI
PPALSPSRRMLPHGGESCSALSPGVFSIDVPEAEASPSARDALGAIFALD
RRHDNPDRDGFSVLQVQGPCPFRIEVTNSFVQAQPPKAPVDGETVVAPDA
RKAVQYRPPDPSCGLFGPMAYDSGGNASARKQRAPINTTPNRAGPAIGSP
VPARSHTAGKNCGMSFRLLGSRSTGGIAGITVPCSIRGRDNSLAGTIPSP
PPRTCNLNHEPTDEGRPGTPEFGEFSGLVDGAVENSAGRRANVVVGGNSP
SAGRRDSSGLVVSTATSGQNVTDWSLQSCDDADDGAFLDQVPTLGEADRT
HPSRLKTTLGQDFLRLFAPSSGHNNGSGLGELHS*
back to top