mRNA_Ecto-sp13_S_contig5917.16448.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5917.16448.1
Unique NamemRNA_Ecto-sp13_S_contig5917.16448.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5917.16448.1 vs. uniprot
Match: D7G918_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G918_ECTSI)

HSP 1 Score: 607 bits (1564), Expect = 2.790e-210
Identity = 339/387 (87.60%), Postives = 347/387 (89.66%), Query Frame = 1 
Query:    1 MGDRQNPSWLGSVIDQVDKLALKIGGYEEAEPPGNGFSDDESDSNSTSSGSSSEGEDSGDSGFEDAAENDXXXXXXXXXGSSPVLKTRTEYKEEAVEDRDAPQSDDLKPMKPERSSKQVPPVSSAENIPSLSVTRSQTSQENCDENDVQCSEEEPLSKECPQVVLSGDNTPLESASPSRSEGRLNMDDVPVLAGDVRRQQRDGTSLRQPLAVVGDLDPTFSTPAHSRDRDALRKGPPLDAVPVASSAGSRRVNREKKRSNEGLNAMSLMNIQSSKDAGHVSPSRAPRLPGSKKKKKFSYVSDTTWMKPKEELAAETSSPPLELESRAAVTGGHAPSQAPPARKPLASDCAVPETTAGAAEVDQASTPQRNRHRPPREKDQGLKNADT 1161
            MGD +NPSWLG VIDQVD+LALKIGGYEEAEPPGNGFSDDESDSNSTS         SGDSGFEDAAE  XXXXXXX  G SPVLKTRTEYKEEA ED DAPQSDDLKPMKPERSSKQVPPVSSAENIPSLSVTRSQ SQENCDENDVQ SEEE L KECPQVV SGDN PLESA+PS S+GRL  DDVPVL GDV RQ+ DG S RQPL V+GDLDPTFSTPAH+RDRDALRKGPPLDAVPVASSAGSRRVNREKKRSNEGLNAMSLMN Q SKDAGHVSPSRAPRLPGSKKKKKFSYVSDTTWMKPKEELA ETSSPP ELESRAAVTGGHAPSQAPPARKPLASDCA PETTAGAAEVDQASTP+RNRHRPP EKDQGLK ADT
Sbjct:    1 MGDGENPSWLGGVIDQVDRLALKIGGYEEAEPPGNGFSDDESDSNSTSXXXXXXXXXSGDSGFEDAAEXXXXXXXXXDAGPSPVLKTRTEYKEEAAEDGDAPQSDDLKPMKPERSSKQVPPVSSAENIPSLSVTRSQISQENCDENDVQGSEEESLGKECPQVVSSGDNAPLESATPSSSQGRLTKDDVPVLEGDVPRQKGDGNSPRQPLDVLGDLDPTFSTPAHNRDRDALRKGPPLDAVPVASSAGSRRVNREKKRSNEGLNAMSLMNTQISKDAGHVSPSRAPRLPGSKKKKKFSYVSDTTWMKPKEELATETSSPPPELESRAAVTGGHAPSQAPPARKPLASDCAAPETTAGAAEVDQASTPRRNRHRPPLEKDQGLKKADT 387
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BLAST of mRNA_Ecto-sp13_S_contig5917.16448.1 vs. uniprot
Match: A0A6H5KJH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH9_9PHAE)

HSP 1 Score: 548 bits (1412), Expect = 1.480e-187
Identity = 315/387 (81.40%), Postives = 333/387 (86.05%), Query Frame = 1 
Query:    1 MGDRQNPSWLGSVIDQVDKLALKIGGYEEAEPPGNGFSDDESDSNSTSSGSSSEGEDSGDSGFEDAAENDXXXXXXXXXGSSPVLKTRTEYKEEAVEDRDAPQSDDLKPMKPERSSKQVPPVSSAENIPSLSVTRSQTSQENCDENDVQCSEEEPLSKECPQVVLSGDNTPLESASPSRSEGRLNMDDVPVLAGDVRRQQRDGTSLRQPLAVVGDLDPTFSTPAHSRDRDALRKGPPLDAVPVASSAGSRRVNREKKRSNEGLNAMSLMNIQSSKDAGHVSPSRAPRLPGSKKKKKFSYVSDTTWMKPKEELAAETSSPPLELESRAAVTGGHAPSQAPPARKPLASDCAVPETTAGAAEVDQASTPQRNRHRPPREKDQGLKNADT 1161
            MGD + PSWLGS+IDQVD+LALKIGGYEE +PPGNGFSDDESDSNST+SGSSSE   SGD  FE      XXXXXXXX G SPVLKTRTEYKEEA E  DAPQSDDL+PMKPE+SSKQ+PPVS A+NIPSLSV RSQTSQENCDENDVQ SEE+PL KE PQVV SGDN PL+SA+ SRSEG L  DDVPVL GD+ R Q DG S RQPL VVGD+D TFSTPAHSRDRDALRKGPPLDAVPVASSAGSRRVNREKK +NEGLNA S MN Q  KDAGHVSPS APRLPGSKKKK FSYVSDTTW+KPKEELAAETSSPPLEL SRAAVTGGHAPSQ PPARKPLASDCA  E T GAAEVDQ+STP+RNRHRPPREKD GLK ADT
Sbjct:    1 MGDGEKPSWLGSMIDQVDRLALKIGGYEEPKPPGNGFSDDESDSNSTNSGSSSEXXXSGDXXFEXXXXX-XXXXXXXXAGPSPVLKTRTEYKEEAAEGGDAPQSDDLEPMKPEQSSKQIPPVSIADNIPSLSVRRSQTSQENCDENDVQGSEEKPLGKEYPQVVSSGDNAPLDSATSSRSEGLLTKDDVPVLEGDLPRPQGDGNSPRQPLDVVGDVDSTFSTPAHSRDRDALRKGPPLDAVPVASSAGSRRVNREKK-NNEGLNAKSPMNTQILKDAGHVSPSGAPRLPGSKKKKNFSYVSDTTWIKPKEELAAETSSPPLELASRAAVTGGHAPSQVPPARKPLASDCAAAEATEGAAEVDQSSTPRRNRHRPPREKDHGLKKADT 385
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5917.16448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G918_ECTSI2.790e-21087.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJH9_9PHAE1.480e-18781.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5917contigEcto-sp13_S_contig5917:35..1478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1161
Hectar predicted targeting categoryother localisation
Exons2
Cds size1161
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463822.5800033-CDS-Ecto-sp13_S_contig5917:34..10951681463822.5800033-CDS-Ecto-sp13_S_contig5917:34..1095Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5917 35..1095 -
1681463822.5940146-CDS-Ecto-sp13_S_contig5917:1378..14781681463822.5940146-CDS-Ecto-sp13_S_contig5917:1378..1478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5917 1379..1478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5917.16448.1prot_Ecto-sp13_S_contig5917.16448.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5917 35..1478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5917.16448.1

>prot_Ecto-sp13_S_contig5917.16448.1 ID=prot_Ecto-sp13_S_contig5917.16448.1|Name=mRNA_Ecto-sp13_S_contig5917.16448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=387bp
MGDRQNPSWLGSVIDQVDKLALKIGGYEEAEPPGNGFSDDESDSNSTSSG
SSSEGEDSGDSGFEDAAENDDDDSGFEDAGSSPVLKTRTEYKEEAVEDRD
APQSDDLKPMKPERSSKQVPPVSSAENIPSLSVTRSQTSQENCDENDVQC
SEEEPLSKECPQVVLSGDNTPLESASPSRSEGRLNMDDVPVLAGDVRRQQ
RDGTSLRQPLAVVGDLDPTFSTPAHSRDRDALRKGPPLDAVPVASSAGSR
RVNREKKRSNEGLNAMSLMNIQSSKDAGHVSPSRAPRLPGSKKKKKFSYV
SDTTWMKPKEELAAETSSPPLELESRAAVTGGHAPSQAPPARKPLASDCA
VPETTAGAAEVDQASTPQRNRHRPPREKDQGLKNADT
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mRNA from alignment at Ecto-sp13_S_contig5917:35..1478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5917.16448.1 ID=mRNA_Ecto-sp13_S_contig5917.16448.1|Name=mRNA_Ecto-sp13_S_contig5917.16448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5917:35..1478- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGACAGGCAGAACCCATCGTGGCTAGGGAGCGTGATAGATCAAGT
CGACAAGTTGGCGCTGAAGATCGGAGGCTACGAAGAAGCCGAGCCTCCAG
GTGAGAAAATTGTTCCTACCTCTCTCTACCGTTGTGTGTATCATGCTTGT
CCGGGCTGCAACATACCATACCTGGCACGTGGTTTTCCTTTTGCCGAGTG
TGTCCATATGTGCAAACGGCCGATGGGCATAAATCACAGCGTCGCGGGTA
CTCTACCCAACGAGTTATGCATGTCCTGCTGCTGCTGGTACCATCTAATT
CTTTCACAAGCTCTTCACACAGACACAAATATTTTTGTACGTGTGGATAT
TGATGGTCGTTCTGCCACGGTTGCATCGTACAGGAAACGGATTCTCGGAC
GACGAATCGGACAGCAACAGCACAAGCAGCGGCAGCAGCAGCGAGGGCGA
GGATTCAGGCGACTCTGGTTTCGAAGACGCCGCGGAAAACGACGACGACG
ATTCTGGTTTCGAAGACGCGGGTTCATCGCCTGTTTTGAAAACAAGAACG
GAATACAAAGAGGAGGCTGTGGAAGACAGAGATGCTCCGCAGTCCGACGA
TCTCAAGCCGATGAAACCGGAACGATCCTCGAAGCAGGTACCGCCTGTGT
CAAGTGCGGAGAATATACCCTCTCTCTCGGTTACACGATCACAAACCAGC
CAAGAAAACTGCGACGAGAACGATGTTCAATGTTCGGAGGAAGAACCTCT
TAGCAAGGAATGCCCACAGGTCGTATTAAGCGGGGACAATACGCCGTTGG
AGTCGGCATCACCTTCACGAAGCGAAGGCCGGTTAAATATGGACGACGTG
CCAGTATTGGCGGGAGACGTTCGTAGACAACAAAGAGATGGAACCTCTCT
CCGACAGCCACTGGCTGTTGTCGGCGACTTGGATCCCACGTTTAGTACTC
CTGCTCACAGCCGAGACCGCGACGCGCTCAGAAAAGGGCCGCCTCTGGAT
GCCGTACCTGTTGCGAGCAGTGCGGGCAGCCGGCGTGTGAATCGCGAAAA
AAAACGCAGCAACGAAGGTCTCAATGCGATGTCGCTCATGAACATACAAA
GTTCAAAGGATGCAGGGCACGTATCGCCGTCGAGAGCGCCGCGCCTTCCA
GGGAGCAAGAAGAAAAAAAAGTTTTCCTACGTGAGCGACACCACATGGAT
GAAGCCAAAGGAGGAACTGGCCGCCGAGACTTCCTCTCCACCGCTGGAGC
TTGAGTCAAGAGCGGCCGTGACCGGTGGGCATGCTCCGAGCCAAGCACCT
CCTGCCAGAAAGCCTCTTGCGTCAGATTGTGCTGTCCCCGAGACTACGGC
GGGCGCTGCTGAGGTCGATCAAGCGTCGACACCACAGAGAAATCGGCATC
GACCCCCACGGGAAAAGGATCAGGGGCTTAAAAACGCTGACACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5917:35..1478-

>mRNA_Ecto-sp13_S_contig5917.16448.1 ID=mRNA_Ecto-sp13_S_contig5917.16448.1|Name=mRNA_Ecto-sp13_S_contig5917.16448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5917:35..1478- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGACAGGCAGAACCCATCGTGGCTAGGGAGCGTGATAGATCAAGT
CGACAAGTTGGCGCTGAAGATCGGAGGCTACGAAGAAGCCGAGCCTCCAG
GAAACGGATTCTCGGACGACGAATCGGACAGCAACAGCACAAGCAGCGGC
AGCAGCAGCGAGGGCGAGGATTCAGGCGACTCTGGTTTCGAAGACGCCGC
GGAAAACGACGACGACGATTCTGGTTTCGAAGACGCGGGTTCATCGCCTG
TTTTGAAAACAAGAACGGAATACAAAGAGGAGGCTGTGGAAGACAGAGAT
GCTCCGCAGTCCGACGATCTCAAGCCGATGAAACCGGAACGATCCTCGAA
GCAGGTACCGCCTGTGTCAAGTGCGGAGAATATACCCTCTCTCTCGGTTA
CACGATCACAAACCAGCCAAGAAAACTGCGACGAGAACGATGTTCAATGT
TCGGAGGAAGAACCTCTTAGCAAGGAATGCCCACAGGTCGTATTAAGCGG
GGACAATACGCCGTTGGAGTCGGCATCACCTTCACGAAGCGAAGGCCGGT
TAAATATGGACGACGTGCCAGTATTGGCGGGAGACGTTCGTAGACAACAA
AGAGATGGAACCTCTCTCCGACAGCCACTGGCTGTTGTCGGCGACTTGGA
TCCCACGTTTAGTACTCCTGCTCACAGCCGAGACCGCGACGCGCTCAGAA
AAGGGCCGCCTCTGGATGCCGTACCTGTTGCGAGCAGTGCGGGCAGCCGG
CGTGTGAATCGCGAAAAAAAACGCAGCAACGAAGGTCTCAATGCGATGTC
GCTCATGAACATACAAAGTTCAAAGGATGCAGGGCACGTATCGCCGTCGA
GAGCGCCGCGCCTTCCAGGGAGCAAGAAGAAAAAAAAGTTTTCCTACGTG
AGCGACACCACATGGATGAAGCCAAAGGAGGAACTGGCCGCCGAGACTTC
CTCTCCACCGCTGGAGCTTGAGTCAAGAGCGGCCGTGACCGGTGGGCATG
CTCCGAGCCAAGCACCTCCTGCCAGAAAGCCTCTTGCGTCAGATTGTGCT
GTCCCCGAGACTACGGCGGGCGCTGCTGAGGTCGATCAAGCGTCGACACC
ACAGAGAAATCGGCATCGACCCCCACGGGAAAAGGATCAGGGGCTTAAAA
ACGCTGACACA
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