mRNA_Ecto-sp13_S_contig59169.16447.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59169.16447.1
Unique NamemRNA_Ecto-sp13_S_contig59169.16447.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59169.16447.1 vs. uniprot
Match: A0A6H5L438_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L438_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.570e-17
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 QVVSVGNGREGESGHVTPNDAVKPGDLVFVKDPYGIG 111
            +VVSVGNGREGESGHVTPNDAVKPGDLVFVKDPYGIG
Sbjct:   93 KVVSVGNGREGESGHVTPNDAVKPGDLVFVKDPYGIG 129
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BLAST of mRNA_Ecto-sp13_S_contig59169.16447.1 vs. uniprot
Match: D7FXF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF3_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.510e-15
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 QVVSVGNGREGESGHVTPNDAVKPGDLVFVKDPYGIG 111
            +VVS+GNGREGESG+VTPNDAVK GDLVFVKDPYGIG
Sbjct:   50 KVVSIGNGREGESGNVTPNDAVKQGDLVFVKDPYGIG 86
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BLAST of mRNA_Ecto-sp13_S_contig59169.16447.1 vs. uniprot
Match: A0A835ZNU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNU0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.570e-9
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 QVVSVGNGREGESGHVTPNDAVKPGDLVFVKDPYGIG 111
            ++VS+G GREGESG +  N  +KPGDLV+VKDP+GIG
Sbjct:   48 KIVSLGQGREGESGTLVENAGLKPGDLVYVKDPWGIG 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59169.16447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L438_9PHAE3.570e-1797.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXF3_ECTSI3.510e-1589.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZNU0_9STRA9.570e-964.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59169contigEcto-sp13_S_contig59169:614..724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score73.2
Seed ortholog evalue2.9e-11
Seed eggNOG ortholog2880.D7FXF3
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Chaperonin 10 Kd subunit
EggNOG OGs2E43F@1,2SB1V@2759
Ec32 ortholog descriptionChaperonin Cpn10
Ec32 orthologEc-07_002990.1
Cds size111
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463822.5329733-CDS-Ecto-sp13_S_contig59169:613..7241681463822.5329733-CDS-Ecto-sp13_S_contig59169:613..724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59169 614..724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59169.16447.1prot_Ecto-sp13_S_contig59169.16447.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59169 614..724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59169.16447.1

>prot_Ecto-sp13_S_contig59169.16447.1 ID=prot_Ecto-sp13_S_contig59169.16447.1|Name=mRNA_Ecto-sp13_S_contig59169.16447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
QVVSVGNGREGESGHVTPNDAVKPGDLVFVKDPYGIG
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mRNA from alignment at Ecto-sp13_S_contig59169:614..724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59169.16447.1 ID=mRNA_Ecto-sp13_S_contig59169.16447.1|Name=mRNA_Ecto-sp13_S_contig59169.16447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59169:614..724+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGTCTCTGTCGGGAATGGCCGCGAAGGGGAAAGCGGCCACGTTAC
GCCGAACGATGCCGTCAAGCCGGGCGACCTCGTCTTCGTGAAGGATCCCT
ACGGGATCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59169:614..724+

>mRNA_Ecto-sp13_S_contig59169.16447.1 ID=mRNA_Ecto-sp13_S_contig59169.16447.1|Name=mRNA_Ecto-sp13_S_contig59169.16447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59169:614..724+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGTCTCTGTCGGGAATGGCCGCGAAGGGGAAAGCGGCCACGTTAC
GCCGAACGATGCCGTCAAGCCGGGCGACCTCGTCTTCGTGAAGGATCCCT
ACGGGATCGGT
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