mRNA_Ecto-sp13_S_contig59149.16442.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59149.16442.1
Unique NamemRNA_Ecto-sp13_S_contig59149.16442.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59149.16442.1 vs. uniprot
Match: A0A6H5K7T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.290e-24
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 3 
Query:    3 GTGMADTTRLPKNLDCRALLEDAKKVIQHFIRTFRDKITMDEYLEAVLEDLGNGDVPRGK 182
            GTGMA+TTRL KNLDCRALLEDAK VIQHF R+ RDKI MDEYLEAVLEDLGNGDVPRGK
Sbjct:  405 GTGMANTTRLSKNLDCRALLEDAK-VIQHFNRSSRDKIAMDEYLEAVLEDLGNGDVPRGK 463
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59149.16442.1 vs. uniprot
Match: A0A6H5KHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.460e-12
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:    3 GTGMADTTRLPKNLDCRALLEDAKKVIQHFIRTFRDKITMDEYLEAVLED--------LGNGDV-PRGK 182
            GTG+A+TTRL KNLDCRALLEDA KVIQHF R+ RDK+++ + L  +LE         L  GDV P GK
Sbjct:   94 GTGLANTTRLSKNLDCRALLEDAMKVIQHFNRSSRDKVSLCKMLLRLLERWDAISHVYLNKGDVFPLGK 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59149.16442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7T5_9PHAE2.290e-2488.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ8_9PHAE3.460e-1257.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59149contigEcto-sp13_S_contig59149:151..848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size184
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463822.1703556-CDS-Ecto-sp13_S_contig59149:150..2631681463822.1703556-CDS-Ecto-sp13_S_contig59149:150..263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59149 151..263 +
1681463822.1827774-CDS-Ecto-sp13_S_contig59149:778..8481681463822.1827774-CDS-Ecto-sp13_S_contig59149:778..848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59149 779..848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59149.16442.1prot_Ecto-sp13_S_contig59149.16442.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59149 151..848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59149.16442.1

>prot_Ecto-sp13_S_contig59149.16442.1 ID=prot_Ecto-sp13_S_contig59149.16442.1|Name=mRNA_Ecto-sp13_S_contig59149.16442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
MAPAWRTPLACRRTSIAAPSWKTLRRSSSTSSELSVTRSRWTSIWRPFWK
TWATATCLVAS
back to top

mRNA from alignment at Ecto-sp13_S_contig59149:151..848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59149.16442.1 ID=mRNA_Ecto-sp13_S_contig59149.16442.1|Name=mRNA_Ecto-sp13_S_contig59149.16442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=698bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59149:151..848+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCGGCATGGCGGACACCACTCGCTTGCCGAAGAACCTCGATTGC
CGCGCCCTCCTGGAAGACGCTAAGAAGGTCATCCAGCACTTCATCAGAAC
TTTCCGTGACAAGGTATGATAACCCGAGGCCGTTTGTTAACCTTTCTGTT
TTGCCTGCTTTGGCTTTCGAATGCAACGGTTTTGGAAGTACGGTTTGCAG
TTACGGGAAGTGGACACCTCACTGTGCGCGCTGCCTTGCGCATATTATAT
GTATCAACGTGGATGACAGATATATGCTTTGTTGCCAGACAGATGATACA
CAAATGCAAACGGGTAAAGCCCATCGGGGTCCCCCGGCGAAACGCCGAGA
CCCCATGAGCCTTCTTGAGGTAGAATAACCGCCCTTGCGAAGGACGGAGG
GTCCTGAGCCAAGGAGGTGGATCCACGAAGACCCTGCGTCGTCGAGTCAC
TCTCACCCCACCCCGGTTGTCATCTACGTCAATCGATTCATCTTTTCCAT
TCTACCTCTCTGGCATGCAGTCTGTGCCTCACTTGATGTTTACGCCAGGG
TTGCTAGGGTCAACCCTACCCAGAAGCACTTGTCTGAGAGTATTACATCA
TTCCCATGCCCGTTCTGGTTTTGCGCAGATCACGATGGACGAGTATCTGG
AGGCCGTTCTGGAAGACCTGGGCAACGGCGACGTGCCTCGTGGCAAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59149:151..848+

>mRNA_Ecto-sp13_S_contig59149.16442.1 ID=mRNA_Ecto-sp13_S_contig59149.16442.1|Name=mRNA_Ecto-sp13_S_contig59149.16442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59149:151..848+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCGGCATGGCGGACACCACTCGCTTGCCGAAGAACCTCGATTGC
CGCGCCCTCCTGGAAGACGCTAAGAAGGTCATCCAGCACTTCATCAGAAC
TTTCCGTGACAAGATCACGATGGACGAGTATCTGGAGGCCGTTCTGGAAG
ACCTGGGCAACGGCGACGTGCCTCGTGGCAAGC
back to top